mRNA_P-wetherbeei_contig9676.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9676.1.1
Unique NamemRNA_P-wetherbeei_contig9676.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9676.1.1 vs. uniprot
Match: A0A835Z3H8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-6
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  343 KRVPVESGNVDLLAATRQWEVGIAALAQLMRLNLSRNRLSEFPPQLERCLLMRELRLAGNA 525
            +R+P+++GN++LL ATR+W+VG+  L  L  LNL+ N L E+P QLE C  + ELR+  NA
Sbjct:  436 ERMPLQTGNLELLKATREWDVGVGQLKDLTALNLTCNALLEWPLQLELCTKLAELRMGRNA 496
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9676.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z3H8_9STRA1.620e-649.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9676contigP-wetherbeei_contig9676:176..1880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1432
Hectar predicted targeting categoryother localisation
Exons2
Cds size1431
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.1792576-CDS-P-wetherbeei_contig9676:175..5131683187105.1792576-CDS-P-wetherbeei_contig9676:175..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9676 176..513 +
1683187105.1879325-CDS-P-wetherbeei_contig9676:786..18791683187105.1879325-CDS-P-wetherbeei_contig9676:786..1879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9676 787..1879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9676.1.1prot_P-wetherbeei_contig9676.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9676 176..1879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9676.1.1

>prot_P-wetherbeei_contig9676.1.1 ID=prot_P-wetherbeei_contig9676.1.1|Name=mRNA_P-wetherbeei_contig9676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=477bp
VAAAAAGTVAQGLSLDLSGCGASRVSSRIYEIPALEELSLAGNLLWRLSP
DLADLTRLRKLDVSRNRLTRLPQELAALRKLESLAAASNRLTALPPRLYL
LSALKDLDLSDNLLKRVPVESGNVDLLAATRQWEVGIAALAQLMRLNLSR
NRLSEFPPQLERCLLMRELRLAGNAIPMVAPAIGALAALEVLDLSGNVLR
SLPESVNDLTALLKLDVSRNALVKLPIRGQGRATAMHAAWVDQVKGGGPK
GSGGAGSGNESVVDGGRDDNSGGGSGEGRGEGSGKGKGTDRGVGNSPKGK
EKKGKGKSSPKKGRGPMAKGDGSNFASPRSVGADSSGGGDAVSPRDGTGS
GGAGNGDAVNPDAGIGGADGSGGSGGGGSDGGKKFLAQLRFLNAEHNELT
ALPRGLSDLASLTDLRLGHNPLAASVGVFLPGPAAASAGAPATAGHTTAP
GAKTPTLSPKAGAKGITVPGKGAAATT
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mRNA from alignment at P-wetherbeei_contig9676:176..1880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9676.1.1 ID=mRNA_P-wetherbeei_contig9676.1.1|Name=mRNA_P-wetherbeei_contig9676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1705bp|location=Sequence derived from alignment at P-wetherbeei_contig9676:176..1880+ (Phaeothamnion wetherbeei SAG_119_79)
GTAGCCGCTGCTGCAGCCGGCACAGTCGCCCAAGGCCTCTCCCTTGACCT
TAGCGGCTGCGGCGCCTCCCGTGTCTCCTCCCGCATTTATGAAATCCCGG
CGCTGGAAGAATTATCGCTGGCGGGCAATCTCCTGTGGCGGCTCAGCCCC
GACCTGGCGGATCTGACGCGGCTCCGGAAGCTGGATGTCTCCCGGAACCG
GCTGACGCGGCTCCCGCAGGAGCTGGCGGCCCTGCGGAAGCTAGAGAGTC
TGGCGGCGGCGAGTAACCGCCTGACGGCGCTGCCGCCGCGACTGTACCTG
CTATCGGCGCTTAAAGACCTGGATCTGTCGGATAACTTGTAAGTATGGAG
AATTCTCCTGTCCCGCGACTTCCGATAGAAAGGTCGTTGATTTTCCAATT
TATGCGGCTTGTTGTCTTGAACGTAACAAGTGCAAGAACTTGCAGTCTTG
CTGCTCCTCACGATGGGCGTCGGTTCTTCCGGCTTGCTTCACTTCTCCAC
CGCCGTCATGGTGCCCGGTGCAGAACCCGTCATACCGTACCAACCCCGTC
TCGTCACGCCTGCCGAAACCAACATAAACTCTCAATCCAAATCCGGCTTA
CACCAAACTAGGCTGAAGCGGGTGCCCGTCGAGTCGGGCAACGTCGACCT
TTTGGCGGCCACCCGCCAGTGGGAAGTCGGCATCGCCGCGCTGGCGCAAC
TGATGCGGCTCAATTTGTCCCGCAACCGCCTGTCGGAATTCCCGCCGCAG
CTGGAGCGCTGCCTGCTGATGCGGGAGCTGCGGCTGGCCGGCAACGCCAT
TCCGATGGTGGCGCCGGCGATCGGCGCGCTGGCGGCGCTCGAGGTCCTGG
ATCTTTCCGGGAATGTTCTGAGATCGCTGCCGGAAAGCGTAAACGACCTG
ACGGCGCTGCTGAAGCTGGATGTGTCCCGCAACGCGCTGGTGAAGCTACC
GATCCGCGGTCAGGGACGTGCCACAGCCATGCACGCCGCCTGGGTTGATC
AGGTTAAGGGCGGCGGCCCCAAGGGCAGCGGCGGCGCTGGCAGTGGCAAT
GAAAGTGTTGTTGATGGTGGTCGTGATGATAACAGTGGCGGTGGCAGTGG
TGAGGGTAGAGGCGAAGGTAGTGGCAAGGGAAAGGGTACTGACCGAGGTG
TTGGTAACAGCCCGAAAGGGAAGGAAAAGAAAGGGAAAGGCAAGTCAAGC
CCGAAAAAAGGCCGCGGCCCAATGGCAAAAGGTGACGGCAGCAATTTCGC
AAGCCCCCGGAGTGTCGGAGCCGACAGCAGTGGTGGCGGCGATGCCGTCA
GTCCCCGTGATGGAACAGGCAGCGGCGGTGCCGGCAATGGCGACGCAGTC
AACCCTGACGCCGGCATCGGCGGAGCTGATGGCAGTGGCGGCAGCGGCGG
CGGCGGCAGCGATGGCGGCAAGAAGTTTCTGGCCCAGCTGCGGTTCCTTA
ACGCTGAGCACAACGAGCTGACGGCACTCCCGCGGGGGCTCTCCGACCTC
GCCTCGCTAACCGACCTGCGACTCGGCCACAACCCACTTGCCGCTTCCGT
CGGCGTTTTTTTGCCCGGGCCTGCAGCCGCATCAGCCGGCGCCCCTGCGA
CGGCTGGGCACACAACCGCCCCCGGCGCCAAGACGCCCACTTTGAGTCCC
AAGGCAGGGGCCAAGGGCATCACCGTTCCGGGAAAAGGCGCTGCCGCTAC
CACGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9676:176..1880+

>mRNA_P-wetherbeei_contig9676.1.1 ID=mRNA_P-wetherbeei_contig9676.1.1|Name=mRNA_P-wetherbeei_contig9676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1431bp|location=Sequence derived from alignment at P-wetherbeei_contig9676:176..1880+ (Phaeothamnion wetherbeei SAG_119_79)
GTAGCCGCTGCTGCAGCCGGCACAGTCGCCCAAGGCCTCTCCCTTGACCT
TAGCGGCTGCGGCGCCTCCCGTGTCTCCTCCCGCATTTATGAAATCCCGG
CGCTGGAAGAATTATCGCTGGCGGGCAATCTCCTGTGGCGGCTCAGCCCC
GACCTGGCGGATCTGACGCGGCTCCGGAAGCTGGATGTCTCCCGGAACCG
GCTGACGCGGCTCCCGCAGGAGCTGGCGGCCCTGCGGAAGCTAGAGAGTC
TGGCGGCGGCGAGTAACCGCCTGACGGCGCTGCCGCCGCGACTGTACCTG
CTATCGGCGCTTAAAGACCTGGATCTGTCGGATAACTTGCTGAAGCGGGT
GCCCGTCGAGTCGGGCAACGTCGACCTTTTGGCGGCCACCCGCCAGTGGG
AAGTCGGCATCGCCGCGCTGGCGCAACTGATGCGGCTCAATTTGTCCCGC
AACCGCCTGTCGGAATTCCCGCCGCAGCTGGAGCGCTGCCTGCTGATGCG
GGAGCTGCGGCTGGCCGGCAACGCCATTCCGATGGTGGCGCCGGCGATCG
GCGCGCTGGCGGCGCTCGAGGTCCTGGATCTTTCCGGGAATGTTCTGAGA
TCGCTGCCGGAAAGCGTAAACGACCTGACGGCGCTGCTGAAGCTGGATGT
GTCCCGCAACGCGCTGGTGAAGCTACCGATCCGCGGTCAGGGACGTGCCA
CAGCCATGCACGCCGCCTGGGTTGATCAGGTTAAGGGCGGCGGCCCCAAG
GGCAGCGGCGGCGCTGGCAGTGGCAATGAAAGTGTTGTTGATGGTGGTCG
TGATGATAACAGTGGCGGTGGCAGTGGTGAGGGTAGAGGCGAAGGTAGTG
GCAAGGGAAAGGGTACTGACCGAGGTGTTGGTAACAGCCCGAAAGGGAAG
GAAAAGAAAGGGAAAGGCAAGTCAAGCCCGAAAAAAGGCCGCGGCCCAAT
GGCAAAAGGTGACGGCAGCAATTTCGCAAGCCCCCGGAGTGTCGGAGCCG
ACAGCAGTGGTGGCGGCGATGCCGTCAGTCCCCGTGATGGAACAGGCAGC
GGCGGTGCCGGCAATGGCGACGCAGTCAACCCTGACGCCGGCATCGGCGG
AGCTGATGGCAGTGGCGGCAGCGGCGGCGGCGGCAGCGATGGCGGCAAGA
AGTTTCTGGCCCAGCTGCGGTTCCTTAACGCTGAGCACAACGAGCTGACG
GCACTCCCGCGGGGGCTCTCCGACCTCGCCTCGCTAACCGACCTGCGACT
CGGCCACAACCCACTTGCCGCTTCCGTCGGCGTTTTTTTGCCCGGGCCTG
CAGCCGCATCAGCCGGCGCCCCTGCGACGGCTGGGCACACAACCGCCCCC
GGCGCCAAGACGCCCACTTTGAGTCCCAAGGCAGGGGCCAAGGGCATCAC
CGTTCCGGGAAAAGGCGCTGCCGCTACCACG
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