mRNA_P-wetherbeei_contig9675.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9675.1.1
Unique NamemRNA_P-wetherbeei_contig9675.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9675.1.1 vs. uniprot
Match: A0A7S2AJS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJS9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-11
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3 
Query:  315 LTPFMLYYCEHRDVVAAALPNAPPEDISRTIAERWRGLPEQSRKAYCLMANTYTENVPKYGPAPALPGKRKRDXXXXXXXXXXXXXXXVSAYVHFNRHHRLHMRHE 632
            LTPFM++YCE+++ V  A PNA P  +SR I E+W+ L     + Y +++ TY +N     P      +RKR+ XXXXXXXXX      SAY+ F++HHR+ ++ E
Sbjct:    6 LTPFMIFYCENKESVQIANPNAGPHVVSRMIVEQWKSLAPDKSRGYSVLSATYADNKKNLTPV-----RRKRERXXXXXXXXXSA---TSAYMFFSKHHRMLLKQE 103
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BLAST of mRNA_P-wetherbeei_contig9675.1.1 vs. uniprot
Match: A0A7S3JW32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW32_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.570e-9
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:  315 LTPFMLYYCEHRDVVAAALPNAPPEDISRTIAERWRGLPEQSRKAYCLMANTYTE 479
            LTPFML++CEH+DVV  A P+A P ++S+ IA+ W+ L  +  +AY +++ TYTE
Sbjct:    5 LTPFMLFFCEHKDVVQQANPSAAPHEVSQIIADNWKALAPEKARAYSVLSATYTE 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9675.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2AJS9_9STRA1.480e-1142.45Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3JW32_9STRA2.570e-949.09Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9675contigP-wetherbeei_contig9675:742..1735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog192875.XP_004347516.1
PFAMsHMG_box
Model size858
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000823
EggNOG OGsCOG5648@1|root,KOG0381@2759|Eukaryota,38EPG@33154|Opisthokonta
DescriptionDNA binding
Cds size447
COG categoryB
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.1275449-UTR-P-wetherbeei_contig9675:741..10251683187105.1275449-UTR-P-wetherbeei_contig9675:741..1025Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9675 742..1025 +
1683187105.1531067-UTR-P-wetherbeei_contig9675:1608..17351683187105.1531067-UTR-P-wetherbeei_contig9675:1608..1735Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9675 1609..1735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187105.1367438-CDS-P-wetherbeei_contig9675:1025..12361683187105.1367438-CDS-P-wetherbeei_contig9675:1025..1236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9675 1026..1236 +
1683187105.1448636-CDS-P-wetherbeei_contig9675:1372..16081683187105.1448636-CDS-P-wetherbeei_contig9675:1372..1608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9675 1373..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9675.1.1prot_P-wetherbeei_contig9675.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9675 1026..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9675.1.1

>prot_P-wetherbeei_contig9675.1.1 ID=prot_P-wetherbeei_contig9675.1.1|Name=mRNA_P-wetherbeei_contig9675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MSVSGPYRRPLTPFMLYYCEHRDVVAAALPNAPPEDISRTIAERWRGLPE
QSRKAYCLMANTYTENVPKYGPAPALPGKRKRDKKERRKRDPREPRPPVS
AYVHFNRHHRLHMRHEHRVSAGMALCRDDIVMTLLVILIVLFRLHFLQ*
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mRNA from alignment at P-wetherbeei_contig9675:742..1735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9675.1.1 ID=mRNA_P-wetherbeei_contig9675.1.1|Name=mRNA_P-wetherbeei_contig9675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=994bp|location=Sequence derived from alignment at P-wetherbeei_contig9675:742..1735+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCTAGGCAATCATCTCGTTCCGCTTGACGCCAATCCTCTCTCGTTTGA
TTGCTTTTGGAGGGAAAAGCACCAAGGCGCGGCAAGGTAGAGGGGCTAAA
TTGGCGAGAAACAGGTTTTACACACTACAGCAGTCCTTCTTTCTCTTTTT
GTTCCTTTCCACTCTCCGTCCGATTCCCTTTCTTCCATCCTGACCATGCA
AGTCGTTGTGCCCCCAACCCCTCCCTTCCACCCATCCCAGGTGTTTTACT
TTCCCATTAGAGAAAGCAGCGCGGCGGTGACGTAATGTCGGTTTCCGGCC
CCTACCGCCGGCCGCTCACCCCCTTCATGCTCTACTACTGCGAACACCGC
GATGTCGTGGCCGCCGCGCTCCCGAATGCACCCCCGGAAGACATCAGTCG
GACGATCGCGGAGAGGTGGCGGGGCCTCCCTGAACAATCACGAAAGGCTT
ACTGTCTGATGGCCAATACGTACACAGAAAATGTGCCCAAATACGGTGAG
CAACAGAGATAGATGTAGAATACATTTTTGGCATTCTTGGGATAAAGGTT
AGAGCTCTACTATCAAAACTATATCTTGTCTTAAAAGATAAGTCACTTCC
ACCTGTCGACAATCAACCCCCGCGTGGCCAGGGCCAGCCCCAGCGCTACC
GGGAAAACGGAAGCGGGACAAGAAGGAGCGCAGAAAACGAGATCCGCGAG
AGCCGAGGCCACCGGTCAGTGCATACGTACACTTCAACCGCCACCACCGC
CTGCATATGAGACATGAACATAGAGTGAGTGCTGGAATGGCGCTATGTCG
AGACGATATTGTAATGACATTACTTGTTATTTTGATAGTTCTCTTTCGGC
TTCATTTCCTGCAATGAGTTCCTTCATCTGGTGAATTCGACGAATCTTAG
CTCTGCTACGTTCGCAGCAAGCAATCTGTTGGCAGCGCCTGCCGCCTTCC
ATTAGTCTGTCGGGGATACGATGTGGGGTGCTTCGCAACCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9675:742..1735+

>mRNA_P-wetherbeei_contig9675.1.1 ID=mRNA_P-wetherbeei_contig9675.1.1|Name=mRNA_P-wetherbeei_contig9675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig9675:742..1735+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGTTTCCGGCCCCTACCGCCGGCCGCTCACCCCCTTCATGCTCTA
CTACTGCGAACACCGCGATGTCGTGGCCGCCGCGCTCCCGAATGCACCCC
CGGAAGACATCAGTCGGACGATCGCGGAGAGGTGGCGGGGCCTCCCTGAA
CAATCACGAAAGGCTTACTGTCTGATGGCCAATACGTACACAGAAAATGT
GCCCAAATACGGGCCAGCCCCAGCGCTACCGGGAAAACGGAAGCGGGACA
AGAAGGAGCGCAGAAAACGAGATCCGCGAGAGCCGAGGCCACCGGTCAGT
GCATACGTACACTTCAACCGCCACCACCGCCTGCATATGAGACATGAACA
TAGAGTGAGTGCTGGAATGGCGCTATGTCGAGACGATATTGTAATGACAT
TACTTGTTATTTTGATAGTTCTCTTTCGGCTTCATTTCCTGCAATGA
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