mRNA_P-wetherbeei_contig9658.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9658.1.1
Unique NamemRNA_P-wetherbeei_contig9658.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A836CRA2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA2_9STRA)

HSP 1 Score: 338 bits (866), Expect = 6.290e-105
Identity = 182/316 (57.59%), Postives = 216/316 (68.35%), Query Frame = 1
Query:    1 CSAPPERPVKAGCGHAFCRSCVEELMATVSEGVVLECPSCSGPLTVDLTGARQGDDADAVDDCEDGAVSSGGGGGVASPRSGCGSSMAGNGGADDAGGXXXXXXXXXXXXXXXATFGALPAGTRPSSCKKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMFS 948
            C   PE+PV A CGH FCRSCV +LM T  EGV +ECP+CS PLTVDL                                            AD+ G                 + G      R  + +K S+I+KI+ A+F+TSTK+EALMQELH MQ+ DP+AKAIVFSQFVNMLDLLE+RIK GG+ CVKLSGH+ V AR+ VL AF+E+P VKVLLISLKAGGVALNLTVA++ FLMDPWWN AAEMQAIDRTHR+GQ KPI+A RF++EDTIEERI++LQ+KKR+VFD+TVGGDA SLARLTVDDLRF+FS
Sbjct:  742 CREQPEQPVTAECGHPFCRSCVVDLMTTAMEGVAMECPTCSKPLTVDLN-------------------------------------------ADEGG----------------RSKGKAVGTLRMRNVQKKSIINKIDLAKFQTSTKLEALMQELHEMQQHDPSAKAIVFSQFVNMLDLLEFRIKRGGVQCVKLSGHMNVGARDVVLEAFKEDPDVKVLLISLKAGGVALNLTVASYCFLMDPWWNPAAEMQAIDRTHRMGQFKPIHAVRFIIEDTIEERILKLQDKKRLVFDSTVGGDAGSLARLTVDDLRFLFS 998          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A6V1NWH0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NWH0_HETAK)

HSP 1 Score: 284 bits (726), Expect = 1.570e-92
Identity = 140/188 (74.47%), Postives = 162/188 (86.17%), Query Frame = 1
Query:  385 KKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMFS 948
            +K S++ KI+ A F+ STKMEALMQELH M+  DPAAKAIVFSQFV+MLDLLE+R+K+GG  C +LSGH+ +  R++ L AFR +P  KVLLISLKAGGVALNLTVANHIFLMDPWWN A EMQAIDRTHRIGQ KPI A RFV+EDT+EERI+RLQ+KKR+VFD TVGGD ASLARLTVDDLRF+FS
Sbjct:   56 RKQSILSKIDLANFQPSTKMEALMQELHAMERRDPAAKAIVFSQFVSMLDLLEHRVKLGGFRCRQLSGHMNIAQRDQALKAFRGDPECKVLLISLKAGGVALNLTVANHIFLMDPWWNPAGEMQAIDRTHRIGQAKPIRAVRFVIEDTVEERILRLQDKKRLVFDGTVGGDQASLARLTVDDLRFLFS 243          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: D7G7X0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X0_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 3.360e-90
Identity = 141/190 (74.21%), Postives = 168/190 (88.42%), Query Frame = 1
Query:  379 SCKKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMFS 948
            S  K SVI++I+  +F++STKMEALM+E+H M E DPAAKAIVFSQFVNMLDL+E+R+  G + C KLSGHL+VD R  VL AF+ +PGVKVLLISLKAGGVALNLTVANHIFLMDPWWN AAEMQAIDRTHR+GQ KPIYATRF++EDT+EERI++LQEKK++VFD+TVGGDAAS  +LTVDDLRF+F+
Sbjct:  383 SVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQFVNMLDLIEFRMHKGQVGCRKLSGHLSVDKREEVLQAFQTDPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQEKKQLVFDSTVGGDAASTGKLTVDDLRFLFA 572          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A7S0JIU8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIU8_9EUKA)

HSP 1 Score: 275 bits (703), Expect = 4.180e-85
Identity = 155/315 (49.21%), Postives = 196/315 (62.22%), Query Frame = 1
Query:    1 CSAPPERPVKAGCGHAFCRSCVEELMATVSEGVVLECPSCSGPLTVDLTGARQGDDADAVDDCEDGAVSSGGGGGVASPRSGCGSSMAGNGGADDAGGXXXXXXXXXXXXXXXATFGALPAGTRPSSCKKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMF 945
            C    +  V+  CGH FC+ CVE+ MA+ +E V + CP+CS PL+VDLT A               AV +G                                             GA   GTR     K  ++ +++   F+TSTKMEALM+ LH M E  PAAKAIVFSQFV+ LDL+E+R+ +GG+  VKL G ++V AR+ VL +FRE+  V V+LISLKAGGVALNLTVA+HIFLMDPWWN AAE QAIDR HR+GQTKPI A RFVV  T+EERI+RLQ+KKR+VF+ TVGGDA SL++L+ +DLRF+F
Sbjct:  293 CFEDSDDAVRTACGHLFCKGCVEDYMASAAESVRVVCPTCSQPLSVDLTAA---------------AVPAG---------------------------------------------GASDGGTRGRPLHKG-ILSRLDLKAFQTSTKMEALMEALHNMLERAPAAKAIVFSQFVSFLDLMEHRLHLGGVKVVKLFGGMSVAARDAVLRSFREDAAVTVILISLKAGGVALNLTVASHIFLMDPWWNPAAEYQAIDRAHRLGQTKPIRAVRFVVRSTVEERILRLQDKKRLVFEGTVGGDAGSLSQLSEEDLRFLF 546          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 4.340e-85
Identity = 141/190 (74.21%), Postives = 168/190 (88.42%), Query Frame = 1
Query:  379 SCKKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMFS 948
            S  K SVI++I+  +F++STKMEALM+E+H M E DPAAKAIVFSQFVNMLDL+E+R+  G + C KLSGHL+VD R  VL AF+ +PGVKVLLISLKAGGVALNLTVANHIFLMDPWWN AAEMQAIDRTHR+GQ KPIYATRF++EDT+EERI++LQEKK++VFD+TVGGDAAS  +LTVDDLRF+F+
Sbjct: 1238 SVTKHSVINRIDLNKFQSSTKMEALMEEVHLMMERDPAAKAIVFSQFVNMLDLIEFRMHKGQVGCRKLSGHLSVDKREEVLQAFQTDPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNPAAEMQAIDRTHRLGQFKPIYATRFIIEDTVEERIIKLQEKKQLVFDSTVGGDAASTGKLTVDDLRFLFA 1427          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A7S4B987_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B987_CHRCT)

HSP 1 Score: 275 bits (703), Expect = 1.280e-84
Identity = 149/315 (47.30%), Postives = 197/315 (62.54%), Query Frame = 1
Query:    1 CSAPPERPVKAGCGHAFCRSCVEELMATVSEGVVLECPSCSGPLTVDLTGARQGDDADAVDDCEDGAVSSGGGGGVASPRSGCGSSMAGNGGADDAGGXXXXXXXXXXXXXXXATFGALPAGTRPSSCKKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMF 945
            C    E PV+A C H FC+ CV++ MA+ +EG  + CP+CS PL+VDLT A     AD                                                            LP+ +      +  ++ +++ + F++STK+EAL++E+H MQ  D AAKAIVFSQFV+ LD++EYR+   GI  VKL+G + V AR  VL AFRE+P V+++LISLKAGGVALNLTVA+HI+LMDPWWN AAE QAIDR HR+GQTKPI A RFVV +T+EERI+RLQ+KKR+VF+ TVGGDAASL++L+ +DLRF+F
Sbjct:  338 CFEDAEEPVRARCAHLFCKGCVQDYMASHAEGAAMHCPTCSQPLSVDLTTAATAGRAD------------------------------------------------------------LPSASVGKPLHRG-ILGRLDLSRFQSSTKIEALLEEIHHMQAHDAAAKAIVFSQFVSFLDIMEYRLMRAGIKVVKLNGGMAVTAREAVLRAFREDPDVRLILISLKAGGVALNLTVASHIYLMDPWWNPAAEYQAIDRAHRLGQTKPIRAVRFVVRNTVEERILRLQDKKRLVFEGTVGGDAASLSQLSEEDLRFLF 591          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A7S0EPJ0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPJ0_9EUKA)

HSP 1 Score: 256 bits (654), Expect = 8.170e-82
Identity = 125/187 (66.84%), Postives = 160/187 (85.56%), Query Frame = 1
Query:  385 KKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMF 945
            K+  ++ K++ + F++STK+EAL++ELH MQE DPAAKAIVFSQFV MLDL+E+R++  GI  VKL+G +++  R  VLT+F+EEPGV+V+LISLKAGGVALNLTVA+ IFLMDPWWN AAE QAIDR HR+GQ KPI A RFVV +T+EERI+RLQ+KKR+VF+ TVGGDAASL++L+ DDLRF+F
Sbjct:   43 KRKGILSKVDLSLFQSSTKIEALLEELHIMQEEDPAAKAIVFSQFVAMLDLIEHRLQKAGIRTVKLNGGMSIAQREAVLTSFKEEPGVRVILISLKAGGVALNLTVASRIFLMDPWWNPAAEYQAIDRAHRLGQHKPIRAVRFVVRNTVEERILRLQDKKRLVFEGTVGGDAASLSQLSEDDLRFLF 229          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A7S3WTM4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WTM4_EMIHU)

HSP 1 Score: 266 bits (681), Expect = 1.020e-81
Identity = 152/303 (50.17%), Postives = 189/303 (62.38%), Query Frame = 1
Query:   37 CGHAFCRSCVEELMATVSEGVVLECPSCSGPLTVDLTGARQGDDADAVDDCEDGAVSSGGGGGVASPRSGCGSSMAGNGGADDAGGXXXXXXXXXXXXXXXATFGALPAGTRPSSCKKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMF 945
            CGHAFCR C+ + + +   G  L C SCS PL+VDL  A                                    AG+  AD A                  T G           K   ++ +++ A+F +STKMEALM+ELH M EADPAAKAIVFSQFV+ LDLLEYRI+  GI  VKL+G ++V AR  VL +F+++ G KV+LISLKAGGVALNLTVA+HI+LMDPWWN AAE QAIDR HR+GQ KPI A RFVV +T+EERI+RLQ+KKR+VF+ TVGGD  SL++L+ DDLRF+F
Sbjct:  294 CGHAFCRECIRQYVDSCPAGAPLTCASCSLPLSVDLNDAPP---------------------------------AAGSPEADGA-----SRARRGITPEEPLTQGGXXXXXXXVRLK--GILGRLDMAQFRSSTKMEALMEELHAMSEADPAAKAIVFSQFVSFLDLLEYRIQRAGIKVVKLNGGMSVAAREGVLNSFKDDFGTKVILISLKAGGVALNLTVASHIYLMDPWWNPAAEYQAIDRAHRLGQHKPIRAVRFVVRNTVEERIIRLQDKKRLVFEGTVGGDIGSLSQLSEDDLRFLF 556          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A397BBU2_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BBU2_9STRA)

HSP 1 Score: 254 bits (649), Expect = 5.150e-81
Identity = 124/188 (65.96%), Postives = 161/188 (85.64%), Query Frame = 1
Query:  388 KSSVIHKI-NPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMFS 948
            K S++ ++ +  +F++STK+EALM+ELH MQ  DP+AKAIVFSQFVNMLDL+E+R+++ G+ CVKLSG + +  R+R+LT FR++P + V LISLKAGGVALNLTVA+HIFLMDPWWN AAE QAIDRTHR+GQ KPI ATRFV+ +TIEERI++LQEKK++VF+ TVG   A+LARLT++DLRF+FS
Sbjct:   46 KGSLLRRLPHLGDFQSSTKIEALMEELHLMQHHDPSAKAIVFSQFVNMLDLIEHRLRLAGLKCVKLSGGIPMAQRDRLLTEFRDDPTLTVFLISLKAGGVALNLTVASHIFLMDPWWNPAAEHQAIDRTHRLGQFKPIRATRFVIANTIEERILKLQEKKQLVFEGTVGSSTAALARLTIEDLRFLFS 233          
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Match: A0A067CJW5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CJW5_SAPPC)

HSP 1 Score: 275 bits (702), Expect = 1.340e-80
Identity = 152/315 (48.25%), Postives = 200/315 (63.49%), Query Frame = 1
Query:    1 CSAPPERPVKAGCGHAFCRSCVEELMATVSEGVVLECPSCSGPLTVDLTGARQGDDADAVDDCEDGAVSSGGGGGVASPRSGCGSSMAGNGGADDAGGXXXXXXXXXXXXXXXATFGALPAGTRPSSCKKSSVIHKINPAEFETSTKMEALMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTVDARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAEMQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDAASLARLTVDDLRFMF 945
            C    E PV+A C H FC+SCVEE MA++       CP+C  PLTVDL           +++  D          VASPRS                                     +    + S  K S +      ++F++STK+EALM+E+H MQE+DP+AK IVFSQFVNMLDL+E+R+++ GI CVKLSG + +  R+++L+ FR++P + + LISLKAGGVALNLTVA+HIFLMDPWWN AAE QAIDRTHR+GQ KPI ATRF+V +TIE+RI++LQEKK++VF+ TVG   A+L RLTV+DLRF+F
Sbjct:  894 CHEEAEDPVRAACTHTFCKSCVEEYMASLLMNAKALCPTCEEPLTVDLAPPEV-----PLEELID----------VASPRS-------------------------------------VDVSLKKSRGKASLLSKLPQLSDFQSSTKIEALMEEIHRMQESDPSAKGIVFSQFVNMLDLIEHRLELAGIRCVKLSGSMPMALRDKLLSLFRDDPKLTIFLISLKAGGVALNLTVASHIFLMDPWWNPAAEHQAIDRTHRLGQFKPIRATRFIVANTIEDRILKLQEKKQLVFEGTVGSSTAALGRLTVEDLRFLF 1156          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9658.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CRA2_9STRA6.290e-10557.59P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6V1NWH0_HETAK1.570e-9274.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7G7X0_ECTSI3.360e-9074.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0JIU8_9EUKA4.180e-8549.21Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A6H5JN56_9PHAE4.340e-8574.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4B987_CHRCT1.280e-8447.30Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0EPJ0_9EUKA8.170e-8266.84Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S3WTM4_EMIHU1.020e-8150.17Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A397BBU2_9STRA5.150e-8165.96Helicase C-terminal domain-containing protein n=1 ... [more]
A0A067CJW5_SAPPC1.340e-8048.25Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9658contigP-wetherbeei_contig9658:2..1706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7X0
Preferred nameRAD16
PFAMsHelicase_C,SNF2_N,zf-C3HC4,zf-C3HC4_2
Model size951
Max annot lvl2759|Eukaryota
KEGG koko:K08066,ko:K12850,ko:K15083
KEGG Pathwayko03040,ko04612,ko05152,map03040,map04612,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000113,GO:0000151,GO:0000166,GO:0000715,GO:0000720,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0004842,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006290,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0016043,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019538,GO:0019787,GO:0030554,GO:0031461,GO:0031463,GO:0032392,GO:0032446,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0035639,GO:0036094,GO:0036211,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051276,GO:0051641,GO:0051716,GO:0061630,GO:0061659,GO:0070035,GO:0070647,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990391
Exons5
Evalue5.51e-91
EggNOG OGsCOG0141@1|root,KOG1002@2759|Eukaryota
Descriptionpyrimidine dimer repair by nucleotide-excision repair
Cds size951
COG categoryE
BRITEko00000,ko00001,ko03000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187104.2972891-CDS-P-wetherbeei_contig9658:1..4601683187104.2972891-CDS-P-wetherbeei_contig9658:1..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9658 2..460 +
1683187104.3085048-CDS-P-wetherbeei_contig9658:590..6671683187104.3085048-CDS-P-wetherbeei_contig9658:590..667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9658 591..667 +
1683187104.3177505-CDS-P-wetherbeei_contig9658:910..10971683187104.3177505-CDS-P-wetherbeei_contig9658:910..1097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9658 911..1097 +
1683187104.326159-CDS-P-wetherbeei_contig9658:1350..14361683187104.326159-CDS-P-wetherbeei_contig9658:1350..1436Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9658 1351..1436 +
1683187104.3385715-CDS-P-wetherbeei_contig9658:1564..17061683187104.3385715-CDS-P-wetherbeei_contig9658:1564..1706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9658 1565..1706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9658.1.1prot_P-wetherbeei_contig9658.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9658 2..1706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9658.1.1

>prot_P-wetherbeei_contig9658.1.1 ID=prot_P-wetherbeei_contig9658.1.1|Name=mRNA_P-wetherbeei_contig9658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
CSAPPERPVKAGCGHAFCRSCVEELMATVSEGVVLECPSCSGPLTVDLTG
ARQGDDADAVDDCEDGAVSSGGGGGVASPRSGCGSSMAGNGGADDAGGSG
GGDGGKGVGAGAGATFGALPAGTRPSSCKKSSVIHKINPAEFETSTKMEA
LMQELHTMQEADPAAKAIVFSQFVNMLDLLEYRIKMGGIDCVKLSGHLTV
DARNRVLTAFREEPGVKVLLISLKAGGVALNLTVANHIFLMDPWWNGAAE
MQAIDRTHRIGQTKPIYATRFVVEDTIEERIVRLQEKKRMVFDATVGGDA
ASLARLTVDDLRFMFS*
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mRNA from alignment at P-wetherbeei_contig9658:2..1706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9658.1.1 ID=mRNA_P-wetherbeei_contig9658.1.1|Name=mRNA_P-wetherbeei_contig9658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1705bp|location=Sequence derived from alignment at P-wetherbeei_contig9658:2..1706+ (Phaeothamnion wetherbeei SAG_119_79)
TGCAGCGCGCCCCCGGAGCGTCCTGTCAAGGCGGGCTGCGGCCACGCCTT CTGCCGGTCGTGCGTCGAGGAGCTCATGGCGACGGTATCGGAGGGCGTCG TGCTCGAGTGCCCATCCTGCTCGGGTCCACTTACCGTCGATCTCACGGGG GCGCGTCAGGGAGACGATGCGGATGCCGTCGACGATTGCGAGGACGGCGC TGTCTCGTCGGGCGGCGGCGGCGGTGTCGCTTCGCCGCGCAGCGGCTGTG GCAGCTCCATGGCGGGCAACGGTGGCGCCGACGACGCTGGCGGAAGCGGG GGCGGGGACGGCGGTAAGGGGGTCGGAGCCGGCGCCGGGGCGACGTTTGG GGCGCTACCCGCGGGCACGCGACCCAGCAGCTGTAAGAAGAGCAGCGTGA TCCACAAGATCAACCCGGCCGAGTTTGAGACCTCGACTAAGATGGAGGCG CTGATGCAGGTGAAGCAAGAAGTGAAGTGGTAGCAGATGGATGGGACGGT TGACGCCCGATTGATTCCCGTCAATTTATGGCTTCGTGATTGCATGACTG AAGTGTACCCCTTTTTTCCCATCCATTTTTTCCTGGCAGGAGCTGCACAC GATGCAAGAGGCGGACCCGGCAGCGAAGGCCATCGTCTTCAGCCAGTTCG TCAACATGCTCGATTTGTGAGTTGGTAAACCCAAGCGGTGACTGCTTTAG CGATCTGAACTCCTCCGAAACGCTTCGGCTGCTATAATGTTACCAATCAG CTGGAATGAGGGTGTCTTAATTTTGTCAGTGGTTGCTCACAAAGTGCGAC GGGCGGGAACGGGGCATTTTTAGACAGCATGGGCATCCGAAAGCGATCTA GCAGGCTAGGAAAGCTTCGGAGCTTCATCACACCAACCTTGGGTGTTCTC TTCCCATAGGCTCGAGTACCGCATCAAGATGGGCGGCATCGACTGCGTCA AGCTTAGCGGCCACCTGACCGTGGATGCCCGCAACCGCGTCCTGACGGCC TTCCGGGAGGAGCCGGGCGTCAAGGTGCTGCTTATATCGCTCAAGGCCGG CGGTGTCGCGCTCAACCTGACAGTCGCCAACCACATCTTCCTCATGGTGC GTGTGAGGAGGCGCGTCTTTCTTGCTTCTGCATTTGGGTTCCGGTATTTG CGGGGGCAGTGCTAACAACAAGAGCGGCCGTGGTGGTGGTGACGGCGCTG TCGCGCCAACGGTCGTTTCTTCTGGAAGCCTTTCTCCTTCAAAAGCTCGT TTGACGAGTTCAGAGTGGGCGATCGGCAGAACGGCAAGTAAGCCTCTGAA TGTCTTCCTGCCCCATTTCGGTGACATAACTGCGGCCTGCCGCCCGCAGG ATCCTTGGTGGAACGGCGCCGCGGAGATGCAGGCGATCGACCGCACCCAC CGCATCGGGCAGACCAAGCCTATCTACGCCACGAGGTAGCTAGCTGCTGC GAAGATCACTTGTAATCCCCTTTGTTCTCCGGGGCCATGTATTTGCGCCG GCATGAAATGTGACCTTCTCTGTCCCTCCGTTCTTGCCCCCTTCTGAAAC GCTGCGCCACCAGATTCGTAGTGGAGGACACCATCGAGGAACGCATTGTG CGGCTGCAGGAGAAGAAGCGCATGGTCTTCGACGCCACGGTCGGCGGGGA CGCCGCCTCGCTGGCGCGCCTCACAGTAGACGATCTCCGCTTTATGTTCT CCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9658:2..1706+

>mRNA_P-wetherbeei_contig9658.1.1 ID=mRNA_P-wetherbeei_contig9658.1.1|Name=mRNA_P-wetherbeei_contig9658.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig9658:2..1706+ (Phaeothamnion wetherbeei SAG_119_79)
TGCAGCGCGCCCCCGGAGCGTCCTGTCAAGGCGGGCTGCGGCCACGCCTT
CTGCCGGTCGTGCGTCGAGGAGCTCATGGCGACGGTATCGGAGGGCGTCG
TGCTCGAGTGCCCATCCTGCTCGGGTCCACTTACCGTCGATCTCACGGGG
GCGCGTCAGGGAGACGATGCGGATGCCGTCGACGATTGCGAGGACGGCGC
TGTCTCGTCGGGCGGCGGCGGCGGTGTCGCTTCGCCGCGCAGCGGCTGTG
GCAGCTCCATGGCGGGCAACGGTGGCGCCGACGACGCTGGCGGAAGCGGG
GGCGGGGACGGCGGTAAGGGGGTCGGAGCCGGCGCCGGGGCGACGTTTGG
GGCGCTACCCGCGGGCACGCGACCCAGCAGCTGTAAGAAGAGCAGCGTGA
TCCACAAGATCAACCCGGCCGAGTTTGAGACCTCGACTAAGATGGAGGCG
CTGATGCAGGAGCTGCACACGATGCAAGAGGCGGACCCGGCAGCGAAGGC
CATCGTCTTCAGCCAGTTCGTCAACATGCTCGATTTGCTCGAGTACCGCA
TCAAGATGGGCGGCATCGACTGCGTCAAGCTTAGCGGCCACCTGACCGTG
GATGCCCGCAACCGCGTCCTGACGGCCTTCCGGGAGGAGCCGGGCGTCAA
GGTGCTGCTTATATCGCTCAAGGCCGGCGGTGTCGCGCTCAACCTGACAG
TCGCCAACCACATCTTCCTCATGGATCCTTGGTGGAACGGCGCCGCGGAG
ATGCAGGCGATCGACCGCACCCACCGCATCGGGCAGACCAAGCCTATCTA
CGCCACGAGATTCGTAGTGGAGGACACCATCGAGGAACGCATTGTGCGGC
TGCAGGAGAAGAAGCGCATGGTCTTCGACGCCACGGTCGGCGGGGACGCC
GCCTCGCTGGCGCGCCTCACAGTAGACGATCTCCGCTTTATGTTCTCCTG
A
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