mRNA_P-wetherbeei_contig9655.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9655.1.1
Unique NamemRNA_P-wetherbeei_contig9655.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9655.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9655contigP-wetherbeei_contig9655:152..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size305
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187104.102949-CDS-P-wetherbeei_contig9655:152..3751683187104.102949-CDS-P-wetherbeei_contig9655:152..375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9655 153..375 -
1683187104.1147702-CDS-P-wetherbeei_contig9655:525..6051683187104.1147702-CDS-P-wetherbeei_contig9655:525..605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9655 526..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9655.1.1prot_P-wetherbeei_contig9655.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9655 153..605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9655.1.1

>prot_P-wetherbeei_contig9655.1.1 ID=prot_P-wetherbeei_contig9655.1.1|Name=mRNA_P-wetherbeei_contig9655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
PAGRATNPLNQVMCMNRRPGSPTTQSRLSAGVQFSWRKVGGGAGCRHPAH
GRQAKKRTARRLLWHDGSANRGWVIERPRAGNGLSSSASSIHTSPTRLLA
C
back to top

mRNA from alignment at P-wetherbeei_contig9655:152..605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9655.1.1 ID=mRNA_P-wetherbeei_contig9655.1.1|Name=mRNA_P-wetherbeei_contig9655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=454bp|location=Sequence derived from alignment at P-wetherbeei_contig9655:152..605- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGGTCGGGCAACCAACCCCCTTAACCAGGTGATGTGTATGAACCG
GCGCCCGGGCTCACCGACGACTCAGTCACGGTGAGGGAATGGGTTGATAT
GATGCGTTGCTCCCAGTGTCGGCTTTGCAAAAAAAATGCCTCTTATGGGT
GATTTTGAGGCCGCTGCGCTTCTTCTTCCTTCCTTCTTCCGCCGAGGCTT
TCTGTGATCTGTTCCCTTCCTCGCGACCAGCCTCTCTGCGGGAGTGCAGT
TTTCTTGGAGGAAAGTTGGTGGCGGCGCTGGCTGCCGCCACCCTGCTCAT
GGGCGTCAGGCCAAAAAGAGGACGGCGCGGCGGTTGCTGTGGCATGATGG
CAGCGCCAACAGGGGTTGGGTTATCGAACGGCCTCGTGCAGGAAATGGAC
TTTCAAGTAGCGCCTCTTCCATCCACACATCTCCAACGCGTTTATTGGCG
TGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9655:152..605-

>mRNA_P-wetherbeei_contig9655.1.1 ID=mRNA_P-wetherbeei_contig9655.1.1|Name=mRNA_P-wetherbeei_contig9655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig9655:152..605- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCCGGTCGGGCAACCAACCCCCTTAACCAGGTGATGTGTATGAACCG
GCGCCCGGGCTCACCGACGACTCAGTCACGCCTCTCTGCGGGAGTGCAGT
TTTCTTGGAGGAAAGTTGGTGGCGGCGCTGGCTGCCGCCACCCTGCTCAT
GGGCGTCAGGCCAAAAAGAGGACGGCGCGGCGGTTGCTGTGGCATGATGG
CAGCGCCAACAGGGGTTGGGTTATCGAACGGCCTCGTGCAGGAAATGGAC
TTTCAAGTAGCGCCTCTTCCATCCACACATCTCCAACGCGTTTATTGGCG
TGC
back to top