mRNA_P-wetherbeei_contig9648.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9648.3.1
Unique NamemRNA_P-wetherbeei_contig9648.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9648.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9648contigP-wetherbeei_contig9648:703..1167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size203
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.6771958-UTR-P-wetherbeei_contig9648:702..7081683187103.6771958-UTR-P-wetherbeei_contig9648:702..708Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9648 703..708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187103.687692-CDS-P-wetherbeei_contig9648:708..7831683187103.687692-CDS-P-wetherbeei_contig9648:708..783Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9648 709..783 -
1683187103.7052603-CDS-P-wetherbeei_contig9648:1047..11671683187103.7052603-CDS-P-wetherbeei_contig9648:1047..1167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9648 1048..1167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9648.3.1prot_P-wetherbeei_contig9648.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9648 709..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9648.3.1

>prot_P-wetherbeei_contig9648.3.1 ID=prot_P-wetherbeei_contig9648.3.1|Name=mRNA_P-wetherbeei_contig9648.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
SSTDGGTGTSRPLTGAPRVQVPPPTSPTGTAAGACVDFPQGRWAQGLRWL
LCTTTTNAAGWSRS*
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mRNA from alignment at P-wetherbeei_contig9648:703..1167-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9648.3.1 ID=mRNA_P-wetherbeei_contig9648.3.1|Name=mRNA_P-wetherbeei_contig9648.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig9648:703..1167- (Phaeothamnion wetherbeei SAG_119_79)
TCTTCCACAGATGGAGGTACAGGTACCTCCAGGCCACTGACAGGTGCCCC
ACGGGTACAGGTACCACCTCCCACAAGCCCCACAGGTACAGCTGCAGGTG
CCTGCGTTGATTTCCCACAGGTACCGTGACAGGTGCTGCCGTTTTTCTTC
CCCTCTTTGCTGTTTTGAGTTATGCATCCATGACTGCAATGTCTTTCTAA
ATGTGTTCTGGAAGCGTTCTTGTTTAACGGCGATCGAATGGATTAGCTGT
TGAGGTGATCTTTGCTGCGGTTGCCAATATCAGCCAGCTATCTTGAAGGC
AATTCTTGGAGACTTATTCCGCCTTTCGCTTTCTGCATTTTCTTTGCGGC
ACTTGCCATCATATCTTTCCCGGCATGAGCACAGGGACGGTGGGCGCAAG
GGTTACGATGGCTTCTTTGTACCACAACAACGAATGCCGCCGGTTGGAGC
AGATCTTGAGCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9648:703..1167-

>mRNA_P-wetherbeei_contig9648.3.1 ID=mRNA_P-wetherbeei_contig9648.3.1|Name=mRNA_P-wetherbeei_contig9648.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig9648:703..1167- (Phaeothamnion wetherbeei SAG_119_79)
TCTTCCACAGATGGAGGTACAGGTACCTCCAGGCCACTGACAGGTGCCCC
ACGGGTACAGGTACCACCTCCCACAAGCCCCACAGGTACAGCTGCAGGTG
CCTGCGTTGATTTCCCACAGGGACGGTGGGCGCAAGGGTTACGATGGCTT
CTTTGTACCACAACAACGAATGCCGCCGGTTGGAGCAGATCTTGA
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