mRNA_P-wetherbeei_contig9619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9619.1.1
Unique NamemRNA_P-wetherbeei_contig9619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig9619.1.1 vs. uniprot
Match: Q8QNA0_ESV1K (EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K)

HSP 1 Score: 180 bits (457), Expect = 1.100e-49
Identity = 112/334 (33.53%), Postives = 180/334 (53.89%), Query Frame = 1 
Query:    1 MSCSTYDERAALNKATPCAEPWQSVFPASVARRVTPALLLVIISVIGSAVARRQTWATQGLVKKNVVLTLAVLSAIANQLSSVYDHSRVSDEPYCLTSMIPGLT--EKTNKMTFAAVGAVSGFFTARGALRGNWDTVALSSPALVLSVYQLMTKTDPRSCKSNAATTGMLGFTMDILSLSGIFAAALSLTAANKRAFALYTTTVAIALVGLICS-----GKYPKRVKD-DCTINDEEDNKSAKNR-RVAEFASQMVLSVANASFWIYALISMKGFGCCSGYPALGLLAADLLLKFEFFNNRQPLMGSGMTRTNVYVLVQLLDVLVSSQAIVSIL 975
            M+C T  ER A N A PC + ++ VFP ++A  V P LL +  SV+G  ++ R+ WA  GLV  +  +++ +L  +A+  SS +DHSRVS E YCLTSMI   T  +   ++ F  +G +     A G   G+    A S P  ++S Y   +    +SC++N   TG L F +DI++  GI    L  +     ++ + T    + +  L  +      +Y KRVK   C INDE D  + K R +  E  + +++SV +  F++Y  +S     CC+ YPAL  L  D+L+K + +   + L+G  + R+ +Y+ VQ LDV +SS ++VS++
Sbjct:    3 MACETLAERQAANAAKPCKKAFRPVFPEAIAGYVAPGLLFLGCSVVGYGLSTRRKWAVSGLVSPSTQMSIMLLLMVADHGSSFWDHSRVSSEEYCLTSMITSKTLDDTIGRLVFGGLGTLLTAAAAHGMRSGSITLAATSVPFAMISYYLCWSPQKFQSCRNNGLFTGGLAFGLDIMTFVGIMEVLLQSSGNKDTSWHVPTVMYCVVISALFVALFGWNSEYGKRVKPGSCEINDEADEAADKQRDKRPELYTGVLMSVTSVMFYVYLKMSFSEISCCATYPALLFLGFDVLIKLQVWKRGEALVGDALHRSFIYLTVQALDVALSSSSLVSLM 336
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNA0_ESV1K1.100e-4933.53EsV-1-188 n=2 Tax=root TaxID=1 RepID=Q8QNA0_ESV1K[more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9619contigP-wetherbeei_contig9619:880..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size975
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionEsV-1-188
Ec32 orthologEc-06_005040.1
Cds size975
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187102.0889733-CDS-P-wetherbeei_contig9619:879..18541683187102.0889733-CDS-P-wetherbeei_contig9619:879..1854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9619 880..1854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9619.1.1prot_P-wetherbeei_contig9619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9619 880..1854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9619.1.1

>prot_P-wetherbeei_contig9619.1.1 ID=prot_P-wetherbeei_contig9619.1.1|Name=mRNA_P-wetherbeei_contig9619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=325bp
MSCSTYDERAALNKATPCAEPWQSVFPASVARRVTPALLLVIISVIGSAV
ARRQTWATQGLVKKNVVLTLAVLSAIANQLSSVYDHSRVSDEPYCLTSMI
PGLTEKTNKMTFAAVGAVSGFFTARGALRGNWDTVALSSPALVLSVYQLM
TKTDPRSCKSNAATTGMLGFTMDILSLSGIFAAALSLTAANKRAFALYTT
TVAIALVGLICSGKYPKRVKDDCTINDEEDNKSAKNRRVAEFASQMVLSV
ANASFWIYALISMKGFGCCSGYPALGLLAADLLLKFEFFNNRQPLMGSGM
TRTNVYVLVQLLDVLVSSQAIVSIL
back to top

mRNA from alignment at P-wetherbeei_contig9619:880..1854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9619.1.1 ID=mRNA_P-wetherbeei_contig9619.1.1|Name=mRNA_P-wetherbeei_contig9619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig9619:880..1854+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTGCTCCACCTACGACGAACGTGCAGCGCTGAACAAAGCCACGCC
GTGCGCCGAACCATGGCAGTCGGTATTCCCGGCGTCTGTTGCACGAAGAG
TGACTCCGGCGCTTCTCCTTGTGATCATATCAGTTATTGGTAGCGCGGTT
GCACGCAGACAAACGTGGGCCACACAGGGGCTAGTGAAGAAAAACGTTGT
GTTGACCCTCGCGGTCCTGTCTGCCATCGCCAACCAGTTGAGTTCCGTAT
ACGACCACAGTCGCGTCAGCGACGAGCCCTACTGCCTAACATCTATGATT
CCCGGTTTGACTGAAAAGACCAACAAGATGACATTTGCTGCTGTGGGTGC
CGTTTCAGGATTCTTTACGGCTCGTGGCGCGCTCCGGGGGAACTGGGATA
CCGTAGCGTTGTCATCCCCCGCTCTGGTGCTGTCGGTGTACCAACTCATG
ACCAAGACTGATCCGCGGTCGTGCAAATCAAACGCGGCCACTACGGGCAT
GCTGGGGTTCACGATGGACATTTTGAGTTTGTCTGGTATCTTTGCCGCCG
CATTGAGTCTCACGGCCGCCAACAAGCGAGCATTTGCACTCTACACAACA
ACGGTGGCAATCGCACTGGTCGGATTGATTTGCTCTGGAAAATACCCCAA
GCGCGTCAAGGACGACTGCACCATCAACGACGAGGAGGACAACAAATCGG
CAAAAAATCGACGCGTCGCGGAATTTGCATCCCAAATGGTTCTGTCTGTT
GCCAATGCTTCTTTTTGGATCTACGCACTTATCAGCATGAAGGGCTTTGG
TTGCTGCAGCGGCTATCCTGCACTGGGCCTCCTTGCGGCGGACCTGCTTC
TCAAGTTTGAATTCTTCAACAATAGACAACCGCTCATGGGCTCTGGTATG
ACGCGCACCAACGTTTACGTCCTGGTCCAGCTCCTTGACGTCCTTGTGTC
CAGCCAGGCGATCGTGTCCATCCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig9619:880..1854+

>mRNA_P-wetherbeei_contig9619.1.1 ID=mRNA_P-wetherbeei_contig9619.1.1|Name=mRNA_P-wetherbeei_contig9619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=975bp|location=Sequence derived from alignment at P-wetherbeei_contig9619:880..1854+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTGCTCCACCTACGACGAACGTGCAGCGCTGAACAAAGCCACGCC
GTGCGCCGAACCATGGCAGTCGGTATTCCCGGCGTCTGTTGCACGAAGAG
TGACTCCGGCGCTTCTCCTTGTGATCATATCAGTTATTGGTAGCGCGGTT
GCACGCAGACAAACGTGGGCCACACAGGGGCTAGTGAAGAAAAACGTTGT
GTTGACCCTCGCGGTCCTGTCTGCCATCGCCAACCAGTTGAGTTCCGTAT
ACGACCACAGTCGCGTCAGCGACGAGCCCTACTGCCTAACATCTATGATT
CCCGGTTTGACTGAAAAGACCAACAAGATGACATTTGCTGCTGTGGGTGC
CGTTTCAGGATTCTTTACGGCTCGTGGCGCGCTCCGGGGGAACTGGGATA
CCGTAGCGTTGTCATCCCCCGCTCTGGTGCTGTCGGTGTACCAACTCATG
ACCAAGACTGATCCGCGGTCGTGCAAATCAAACGCGGCCACTACGGGCAT
GCTGGGGTTCACGATGGACATTTTGAGTTTGTCTGGTATCTTTGCCGCCG
CATTGAGTCTCACGGCCGCCAACAAGCGAGCATTTGCACTCTACACAACA
ACGGTGGCAATCGCACTGGTCGGATTGATTTGCTCTGGAAAATACCCCAA
GCGCGTCAAGGACGACTGCACCATCAACGACGAGGAGGACAACAAATCGG
CAAAAAATCGACGCGTCGCGGAATTTGCATCCCAAATGGTTCTGTCTGTT
GCCAATGCTTCTTTTTGGATCTACGCACTTATCAGCATGAAGGGCTTTGG
TTGCTGCAGCGGCTATCCTGCACTGGGCCTCCTTGCGGCGGACCTGCTTC
TCAAGTTTGAATTCTTCAACAATAGACAACCGCTCATGGGCTCTGGTATG
ACGCGCACCAACGTTTACGTCCTGGTCCAGCTCCTTGACGTCCTTGTGTC
CAGCCAGGCGATCGTGTCCATCCTC
back to top