mRNA_P-wetherbeei_contig9538.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9538.1.1
Unique NamemRNA_P-wetherbeei_contig9538.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9538.1.1 vs. uniprot
Match: A0A836CN06_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN06_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.210e-16
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  148 SQLPWTEIEDWLVQDTFPRRVVVSKMLADSLYAIGSGKHVMWRRMVMEVPELLGRTPAQARSR 336
            + +PWTE EDWL+QDTF R            YAIGSGKHV+W RMV EVPEL+GRTP +AR R
Sbjct:   22 ADMPWTEFEDWLLQDTFAR------------YAIGSGKHVLWNRMVTEVPELIGRTPQEARRR 72
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BLAST of mRNA_P-wetherbeei_contig9538.1.1 vs. uniprot
Match: D7G8N9_ECTSI (Myb-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.740e-14
Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:   82 RWAADASSPNAAGV--WTDPADAMSQLPWTEIEDWLVQDTFPRRVVVSKMLADSLYAIGSGKHVMWRRMVMEVPELLGRTPAQARSR 336
            +W  +A+  N AG   W   A+A     WTE EDWL+QDT+ R            YAIGSGKHV+WRRMV EVPEL+ RTP +AR R
Sbjct:  145 KWG-EAAEGNLAGEFEWEGGAEAA----WTEFEDWLLQDTYSR------------YAIGSGKHVLWRRMVREVPELMERTPQEARER 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9538.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CN06_9STRA3.210e-1660.32Myb-like domain-containing protein n=1 Tax=Tribone... [more]
D7G8N9_ECTSI2.740e-1450.57Myb-like domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9538contigP-wetherbeei_contig9538:1931..2511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002440.1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187098.022891-CDS-P-wetherbeei_contig9538:1930..21691683187098.022891-CDS-P-wetherbeei_contig9538:1930..2169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9538 1931..2169 +
1683187098.0340972-CDS-P-wetherbeei_contig9538:2411..25111683187098.0340972-CDS-P-wetherbeei_contig9538:2411..2511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9538 2412..2511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9538.1.1prot_P-wetherbeei_contig9538.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9538 1931..2511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9538.1.1

>prot_P-wetherbeei_contig9538.1.1 ID=prot_P-wetherbeei_contig9538.1.1|Name=mRNA_P-wetherbeei_contig9538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
GGGGGGALWGGGSSSRSSSGGGGNGGARWAADASSPNAAGVWTDPADAMS
QLPWTEIEDWLVQDTFPRRVVVSKMLADSLYAIGSGKHVMWRRMVMEVPE
LLGRTPAQARSR*
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mRNA from alignment at P-wetherbeei_contig9538:1931..2511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9538.1.1 ID=mRNA_P-wetherbeei_contig9538.1.1|Name=mRNA_P-wetherbeei_contig9538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=581bp|location=Sequence derived from alignment at P-wetherbeei_contig9538:1931..2511+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGCGGCGCGCTATGGGGTGGTGGTAGCAGCAGCCGCAG
CAGCAGTGGTGGTGGTGGCAACGGCGGGGCAAGATGGGCGGCAGACGCGT
CGTCGCCGAACGCTGCGGGTGTCTGGACAGATCCTGCGGACGCCATGAGC
CAGCTGCCTTGGACGGAAATCGAGGACTGGCTCGTCCAAGATACTTTTCC
AAGGCGCGTCGTTGTTTCCAAGATGCTGGCAGATAGCTTGTGGCACCGCC
TCCATGACGAGGAAGAGGAACCGCATTGCATGTGCCATCCCATTGCCATT
TGCTTTCAGTCTTATGCTACTGCTTATTCTCAGCCTCGTATAAATCAGTG
GGCTGCGGACCACTTCTTTGCTGCTTCCCTTCCTTTCGGCGGACGGACTC
TATTTGAAGAGGGAAGCGATCAGGCATTCAATCCCTCCGCATTGCATCCG
TCGCAACCGGTCCGATGCCGTGCCGATGCAGGTATGCCATTGGATCGGGC
AAGCATGTCATGTGGCGGCGGATGGTTATGGAGGTCCCCGAGCTGCTGGG
GCGGACGCCGGCGCAGGCGCGCAGCAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9538:1931..2511+

>mRNA_P-wetherbeei_contig9538.1.1 ID=mRNA_P-wetherbeei_contig9538.1.1|Name=mRNA_P-wetherbeei_contig9538.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig9538:1931..2511+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGGCGGCGGCGCGCTATGGGGTGGTGGTAGCAGCAGCCGCAG
CAGCAGTGGTGGTGGTGGCAACGGCGGGGCAAGATGGGCGGCAGACGCGT
CGTCGCCGAACGCTGCGGGTGTCTGGACAGATCCTGCGGACGCCATGAGC
CAGCTGCCTTGGACGGAAATCGAGGACTGGCTCGTCCAAGATACTTTTCC
AAGGCGCGTCGTTGTTTCCAAGATGCTGGCAGATAGCTTGTATGCCATTG
GATCGGGCAAGCATGTCATGTGGCGGCGGATGGTTATGGAGGTCCCCGAG
CTGCTGGGGCGGACGCCGGCGCAGGCGCGCAGCAGGTGA
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