mRNA_P-wetherbeei_contig9523.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9523.1.1
Unique NamemRNA_P-wetherbeei_contig9523.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A6H5JJZ9_9PHAE (AAA domain-containing protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A6H5JJZ9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.760e-13
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 DYDDEDXXXXXXALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYD ED      ALDEGDIALLKTYGLGPY+T+IKDIEKEI  AK++V
Sbjct:   14 DYDGEDDDAPPAALDEGDIALLKTYGLGPYTTSIKDIEKEINEAKEQV 61          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A6V1T8U9_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1T8U9_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 3.390e-11
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 DYDDEDXXXXXXALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYD+E       ALDEGDIALLKTYGLGPY+ AIK IE EI  +KDKV
Sbjct:   14 DYDEEQDEKPTKALDEGDIALLKTYGLGPYTNAIKKIEDEINKSKDKV 61          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A7S3Y2G3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2G3_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 7.800e-10
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 DYDDEDXXXXXXALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYD+E+      ALDEGDIALLKTYG+GPY+ AIK  E+EI  + DKV
Sbjct:  107 DYDEEEGDKPTKALDEGDIALLKTYGVGPYTNAIKKAEEEISKSMDKV 154          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: B5Y3S3_PHATC (Predicted protein n=5 Tax=Bacillariophycidae TaxID=33850 RepID=B5Y3S3_PHATC)

HSP 1 Score: 60.1 bits (144), Expect = 2.720e-9
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 DYDDEDXXXXXXALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYD+E+       LDEGDI LLK+YGLGPYST IKD+EKEI+  +  V
Sbjct:   13 DYDEEEKEDAPPPLDEGDIVLLKSYGLGPYSTKIKDVEKEIKKHQQTV 60          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A7R9UDY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDY0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.610e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 DYDDEDXXXXXX-ALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYDD+D       +LD GDIALLKTYGLGPY+ AIK +E EI++ +D+V
Sbjct:   15 DYDDDDNNAAVGPSLDAGDIALLKTYGLGPYTEAIKKVEAEIKTHQDRV 63          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A7S2I8S1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8S1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.550e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 DYDDEDXXXXXXALDEGDIALLKTYGLGPYSTAIKDIEKEIE 126
            DYDDE+       LDE DIALLK+YGLGPY+T+IK+ E+EI+
Sbjct:   12 DYDDEEKEDTAPPLDEADIALLKSYGLGPYATSIKEAEEEIK 53          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A7S2CGH0_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CGH0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.430e-8
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 DYDDEDXXXXXXALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYD+E+       LDEGDIALLKTYG+GPY+  IK  EKEI+  ++K+
Sbjct:   13 DYDEEEDEAPVPVLDEGDIALLKTYGVGPYTNKIKSTEKEIKEHQEKL 60          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A392M6Q6_9FABA (26S protease regulatory subunit 7-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M6Q6_9FABA)

HSP 1 Score: 53.1 bits (126), Expect = 2.950e-8
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   40 LDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            LDE DIALLKTYGLGPYST IK +EKEI+    KV
Sbjct:   17 LDEDDIALLKTYGLGPYSTGIKKVEKEIKDMAKKV 51          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A7S3HF68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF68_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.670e-8
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    1 DYDDEDXXXXXXALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYD ED      ALDEGDIALLKTYG+GPY+ AIK  E +I+  ++ V
Sbjct:   13 DYDKEDDDKPIIALDEGDIALLKTYGIGPYTNAIKAAEDDIKKHQETV 60          
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Match: A0A7R9UG07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG07_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.600e-8
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 DYDDEDXXXXXX-ALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV 144
            DYDD+D       +LD GDIALLKTYGLGPY+ AIK +E EI++ +D+V
Sbjct:   15 DYDDDDNNAAVGPSLDAGDIALLKTYGLGPYTEAIKKVEAEIKTHQDRV 63          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9523.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJZ9_9PHAE5.760e-1372.92AAA domain-containing protein n=2 Tax=Ochrophyta T... [more]
A0A6V1T8U9_HETAK3.390e-1168.75Hypothetical protein n=2 Tax=Chattonellaceae TaxID... [more]
A0A7S3Y2G3_HETAK7.800e-1062.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B5Y3S3_PHATC2.720e-960.42Predicted protein n=5 Tax=Bacillariophycidae TaxID... [more]
A0A7R9UDY0_9STRA7.610e-959.18Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2I8S1_9STRA1.550e-861.90Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2CGH0_9STRA2.430e-856.25Hypothetical protein n=3 Tax=Dictyochophyceae TaxI... [more]
A0A392M6Q6_9FABA2.950e-874.2926S protease regulatory subunit 7-like (Fragment) ... [more]
A0A7S3HF68_9STRA4.670e-858.33Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7R9UG07_9STRA5.600e-859.18Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9523contigP-wetherbeei_contig9523:675..818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr28219
PFAMsAAA
Model size144
Max annot lvl2836|Bacillariophyta
KEGG koko:K03061
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.46e-10
EggNOG OGsCOG0554@1|root,KOG0729@2759|Eukaryota,2XB1B@2836|Bacillariophyta
Descriptionproteasome-activating ATPase activity
Cds size144
COG categoryO
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187097.3380296-CDS-P-wetherbeei_contig9523:674..8181683187097.3380296-CDS-P-wetherbeei_contig9523:674..818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9523 675..818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9523.1.1prot_P-wetherbeei_contig9523.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9523 675..818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9523.1.1

>prot_P-wetherbeei_contig9523.1.1 ID=prot_P-wetherbeei_contig9523.1.1|Name=mRNA_P-wetherbeei_contig9523.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
DYDDEDEEPPPPALDEGDIALLKTYGLGPYSTAIKDIEKEIESAKDKV
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mRNA from alignment at P-wetherbeei_contig9523:675..818-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9523.1.1 ID=mRNA_P-wetherbeei_contig9523.1.1|Name=mRNA_P-wetherbeei_contig9523.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig9523:675..818- (Phaeothamnion wetherbeei SAG_119_79)
GACTACGACGATGAGGACGAGGAGCCGCCGCCGCCGGCCCTCGACGAGGG CGACATCGCTCTCTTGAAAACATATGGATTGGGGCCATACAGCACCGCCA TCAAGGATATTGAGAAGGAGATCGAATCCGCAAAGGACAAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9523:675..818-

>mRNA_P-wetherbeei_contig9523.1.1 ID=mRNA_P-wetherbeei_contig9523.1.1|Name=mRNA_P-wetherbeei_contig9523.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig9523:675..818- (Phaeothamnion wetherbeei SAG_119_79)
GACTACGACGATGAGGACGAGGAGCCGCCGCCGCCGGCCCTCGACGAGGG
CGACATCGCTCTCTTGAAAACATATGGATTGGGGCCATACAGCACCGCCA
TCAAGGATATTGAGAAGGAGATCGAATCCGCAAAGGACAAGGTG
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