mRNA_P-wetherbeei_contig927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig927.1.1
Unique NamemRNA_P-wetherbeei_contig927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig927.1.1 vs. uniprot
Match: F0Y2V3_AURAN (Helicase C-terminal domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2V3_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 8.730e-7
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    4 SFKVRVAIPNWHCASLSDRAG-------KIFMPRNSLAAAAVHQRAKER---VFGVASNMLDLQSGGARAEGITLLPPGDDWLALAL 234
            + K+ V  P W        AG       ++  P +SLAA AVH  A +R   V+ VA  M+D   GGARAE +T+LPPGD+WL LAL
Sbjct:  711 AVKLDVPKPAWKLVFAPASAGASAPPSAQVLTPFHSLAAVAVHHAADDRDATVYAVAGAMVDTAGGGARAESVTVLPPGDEWLGLAL 797
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BLAST of mRNA_P-wetherbeei_contig927.1.1 vs. uniprot
Match: A0A8J2X0N8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0N8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.470e-5
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   61 AGKIFMPRNSLAAAAVHQRAKER--VFGVASNMLDLQSGGARAEGITLLPPGDDWLALAL 234
            + ++ MP +SL+A AVH    +   V+ VA  MLD   GGARAE +TLLPPG++WLAL L
Sbjct: 1008 SAQVLMPFHSLSAVAVHHSTTKDQVVYAVAGTMLDTAGGGARAEQLTLLPPGEEWLALCL 1067
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0Y2V3_AURAN8.730e-743.68Helicase C-terminal domain-containing protein n=1 ... [more]
A0A8J2X0N8_9STRA1.470e-551.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig927contigP-wetherbeei_contig927:233..2243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009035162.1
PFAMsDEAD,HA2,Helicase_C,XPG_I
Model size2013
Max annot lvl2759|Eukaryota
KEGG koko:K18995
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-07
EggNOG OGsCOG1643@1|root,KOG0920@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size2010
COG categoryL
BRITEko00000,ko01000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187084.7282767-CDS-P-wetherbeei_contig927:232..22421683187084.7282767-CDS-P-wetherbeei_contig927:232..2242Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig927 233..2242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig927.1.1prot_P-wetherbeei_contig927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig927 233..2242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig927.1.1

>prot_P-wetherbeei_contig927.1.1 ID=prot_P-wetherbeei_contig927.1.1|Name=mRNA_P-wetherbeei_contig927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=670bp
DSFKVRVAIPNWHCASLSDRAGKIFMPRNSLAAAAVHQRAKERVFGVASN
MLDLQSGGARAEGITLLPPGDDWLALALLTFGLPAAGLNHRLGAERVAAA
ADFHEACCVLDESVEPHPELVRRLHTLFGLVSDADAAAAARSAAAAAAGE
EEEILYRGNRRRGRGGDDRVVGSGSVQRRAAGGGYALSAAAGPVAAAAAA
PVRAPAPAATMRASASDRASPAPGSSAAVAATGLMGAGAAAARRGPRQAK
KAAAATAAVVAAGAPFQARAQRPTARPDKPSRAAVSAAAAAAAEGYVLPS
AAYYSVPPAAAPISLAELEAAIFAKSSPAAPPPVAAAPAAKVPRARKPEH
LLAEQRAVAAATAFLKEANGAIIAVGAVDDAIFAAVGFRVGGPDGKRALG
RATPIVSFLRRIPAVAVKKGRAYYLMVEHHQSSDAAVKGRGGAAINGGGS
AAVNDGSADHGSISGSGGDHGGGGGRVGALPAVDSGGWANATNGAWKDDS
GWVSPSAYANGGASGRDGNDDDTRNSRCSAPSLAALMLAVQRLLRLSAPY
FVKEMSLIHEIASIKDPESGSWLALTPAAIKRATGSKQMSVATFLQSVPG
VEKDGNKHKYRWCGNDAAAAAAPADDETFSLEGSAAAATVPASRSALATP
ASVTRGVHARSPVLVLPKRM
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mRNA from alignment at P-wetherbeei_contig927:233..2243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig927.1.1 ID=mRNA_P-wetherbeei_contig927.1.1|Name=mRNA_P-wetherbeei_contig927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2011bp|location=Sequence derived from alignment at P-wetherbeei_contig927:233..2243+ (Phaeothamnion wetherbeei SAG_119_79)
GACTCATTCAAGGTGCGCGTGGCCATCCCCAACTGGCACTGCGCCTCGCT
CAGCGACCGCGCGGGCAAGATCTTCATGCCCCGTAACTCGCTCGCCGCCG
CCGCCGTCCACCAGCGGGCCAAGGAGCGCGTCTTCGGCGTCGCTAGCAAC
ATGCTCGACCTGCAGAGCGGCGGCGCCCGGGCCGAGGGCATCACCCTGTT
GCCGCCGGGGGACGACTGGCTGGCGCTGGCGCTCCTGACATTCGGGCTGC
CGGCGGCGGGGCTCAACCACAGGCTGGGCGCGGAGCGGGTGGCGGCAGCA
GCGGACTTCCACGAGGCGTGCTGCGTCCTGGATGAGTCCGTCGAGCCGCA
TCCCGAGCTGGTTCGGCGCCTGCACACGCTCTTCGGACTGGTGTCTGACG
CCGACGCGGCAGCGGCGGCGCGGTCGGCGGCCGCGGCCGCCGCAGGTGAG
GAGGAGGAGATTCTGTACCGCGGCAATCGCCGGCGGGGGCGGGGCGGCGA
TGACCGCGTCGTGGGCAGCGGCAGCGTCCAGCGCCGCGCTGCGGGCGGCG
GCTACGCGCTGTCCGCAGCGGCTGGGCCTGTGGCGGCTGCGGCGGCAGCG
CCGGTGCGGGCGCCGGCGCCAGCGGCGACAATGAGGGCTTCGGCTTCGGA
TCGTGCGTCGCCGGCTCCCGGGTCGTCAGCAGCGGTTGCGGCGACGGGCC
TGATGGGGGCCGGGGCGGCGGCTGCCAGGAGAGGGCCGCGACAAGCAAAG
AAGGCTGCGGCAGCAACAGCGGCTGTGGTGGCAGCGGGCGCTCCGTTCCA
AGCGCGGGCGCAGAGGCCGACGGCACGCCCGGATAAACCATCGAGGGCAG
CAGTCAGCGCAGCGGCGGCCGCGGCGGCTGAGGGCTATGTTCTTCCGTCA
GCGGCGTATTACTCTGTGCCGCCGGCTGCGGCGCCCATTTCCCTGGCAGA
GCTCGAAGCGGCGATCTTCGCGAAGTCATCGCCCGCGGCGCCGCCGCCGG
TTGCAGCAGCTCCGGCCGCCAAGGTTCCCCGAGCGCGAAAGCCTGAGCAC
CTGCTGGCAGAGCAGCGGGCCGTCGCCGCCGCCACGGCGTTCCTGAAAGA
AGCCAACGGCGCCATTATAGCGGTGGGGGCAGTCGACGATGCCATCTTTG
CGGCGGTCGGCTTTCGCGTCGGCGGGCCGGATGGCAAGAGGGCGCTCGGC
CGCGCCACCCCCATCGTATCATTCCTGCGCCGCATTCCGGCGGTGGCGGT
GAAGAAGGGGCGGGCGTACTATTTGATGGTAGAACACCATCAGAGCAGCG
ACGCCGCTGTTAAAGGCCGCGGCGGCGCCGCCATCAACGGCGGCGGCAGC
GCGGCTGTCAACGATGGCAGCGCTGATCACGGCAGCATCAGCGGCAGCGG
TGGCGACCATGGCGGTGGCGGCGGCCGTGTTGGGGCGCTTCCCGCTGTTG
ACAGCGGCGGTTGGGCCAATGCGACCAACGGCGCGTGGAAGGATGATAGC
GGGTGGGTCTCGCCCTCCGCCTATGCCAACGGCGGAGCTTCTGGCCGCGA
CGGCAACGACGACGACACGCGGAACAGCAGATGCAGCGCGCCGAGCTTGG
CGGCGCTGATGCTGGCGGTCCAGCGGCTCCTGCGCCTGTCTGCGCCGTAC
TTTGTGAAGGAGATGTCGCTGATCCACGAGATCGCAAGCATCAAGGACCC
TGAGTCCGGCTCGTGGCTGGCGTTGACGCCAGCGGCCATCAAGCGGGCGA
CGGGCAGCAAGCAAATGTCGGTGGCGACGTTCCTGCAGAGCGTGCCGGGC
GTTGAGAAAGACGGCAATAAGCATAAATACCGGTGGTGCGGCAACGACGC
GGCGGCGGCAGCAGCGCCGGCGGACGACGAGACATTCTCGCTGGAGGGAT
CGGCGGCGGCGGCAACAGTGCCAGCGTCGCGGTCCGCCCTCGCAACACCT
GCCTCCGTCACAAGAGGGGTGCATGCGCGCTCGCCGGTACTCGTACTGCC
CAAGCGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig927:233..2243+

>mRNA_P-wetherbeei_contig927.1.1 ID=mRNA_P-wetherbeei_contig927.1.1|Name=mRNA_P-wetherbeei_contig927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2010bp|location=Sequence derived from alignment at P-wetherbeei_contig927:233..2243+ (Phaeothamnion wetherbeei SAG_119_79)
GACTCATTCAAGGTGCGCGTGGCCATCCCCAACTGGCACTGCGCCTCGCT
CAGCGACCGCGCGGGCAAGATCTTCATGCCCCGTAACTCGCTCGCCGCCG
CCGCCGTCCACCAGCGGGCCAAGGAGCGCGTCTTCGGCGTCGCTAGCAAC
ATGCTCGACCTGCAGAGCGGCGGCGCCCGGGCCGAGGGCATCACCCTGTT
GCCGCCGGGGGACGACTGGCTGGCGCTGGCGCTCCTGACATTCGGGCTGC
CGGCGGCGGGGCTCAACCACAGGCTGGGCGCGGAGCGGGTGGCGGCAGCA
GCGGACTTCCACGAGGCGTGCTGCGTCCTGGATGAGTCCGTCGAGCCGCA
TCCCGAGCTGGTTCGGCGCCTGCACACGCTCTTCGGACTGGTGTCTGACG
CCGACGCGGCAGCGGCGGCGCGGTCGGCGGCCGCGGCCGCCGCAGGTGAG
GAGGAGGAGATTCTGTACCGCGGCAATCGCCGGCGGGGGCGGGGCGGCGA
TGACCGCGTCGTGGGCAGCGGCAGCGTCCAGCGCCGCGCTGCGGGCGGCG
GCTACGCGCTGTCCGCAGCGGCTGGGCCTGTGGCGGCTGCGGCGGCAGCG
CCGGTGCGGGCGCCGGCGCCAGCGGCGACAATGAGGGCTTCGGCTTCGGA
TCGTGCGTCGCCGGCTCCCGGGTCGTCAGCAGCGGTTGCGGCGACGGGCC
TGATGGGGGCCGGGGCGGCGGCTGCCAGGAGAGGGCCGCGACAAGCAAAG
AAGGCTGCGGCAGCAACAGCGGCTGTGGTGGCAGCGGGCGCTCCGTTCCA
AGCGCGGGCGCAGAGGCCGACGGCACGCCCGGATAAACCATCGAGGGCAG
CAGTCAGCGCAGCGGCGGCCGCGGCGGCTGAGGGCTATGTTCTTCCGTCA
GCGGCGTATTACTCTGTGCCGCCGGCTGCGGCGCCCATTTCCCTGGCAGA
GCTCGAAGCGGCGATCTTCGCGAAGTCATCGCCCGCGGCGCCGCCGCCGG
TTGCAGCAGCTCCGGCCGCCAAGGTTCCCCGAGCGCGAAAGCCTGAGCAC
CTGCTGGCAGAGCAGCGGGCCGTCGCCGCCGCCACGGCGTTCCTGAAAGA
AGCCAACGGCGCCATTATAGCGGTGGGGGCAGTCGACGATGCCATCTTTG
CGGCGGTCGGCTTTCGCGTCGGCGGGCCGGATGGCAAGAGGGCGCTCGGC
CGCGCCACCCCCATCGTATCATTCCTGCGCCGCATTCCGGCGGTGGCGGT
GAAGAAGGGGCGGGCGTACTATTTGATGGTAGAACACCATCAGAGCAGCG
ACGCCGCTGTTAAAGGCCGCGGCGGCGCCGCCATCAACGGCGGCGGCAGC
GCGGCTGTCAACGATGGCAGCGCTGATCACGGCAGCATCAGCGGCAGCGG
TGGCGACCATGGCGGTGGCGGCGGCCGTGTTGGGGCGCTTCCCGCTGTTG
ACAGCGGCGGTTGGGCCAATGCGACCAACGGCGCGTGGAAGGATGATAGC
GGGTGGGTCTCGCCCTCCGCCTATGCCAACGGCGGAGCTTCTGGCCGCGA
CGGCAACGACGACGACACGCGGAACAGCAGATGCAGCGCGCCGAGCTTGG
CGGCGCTGATGCTGGCGGTCCAGCGGCTCCTGCGCCTGTCTGCGCCGTAC
TTTGTGAAGGAGATGTCGCTGATCCACGAGATCGCAAGCATCAAGGACCC
TGAGTCCGGCTCGTGGCTGGCGTTGACGCCAGCGGCCATCAAGCGGGCGA
CGGGCAGCAAGCAAATGTCGGTGGCGACGTTCCTGCAGAGCGTGCCGGGC
GTTGAGAAAGACGGCAATAAGCATAAATACCGGTGGTGCGGCAACGACGC
GGCGGCGGCAGCAGCGCCGGCGGACGACGAGACATTCTCGCTGGAGGGAT
CGGCGGCGGCGGCAACAGTGCCAGCGTCGCGGTCCGCCCTCGCAACACCT
GCCTCCGTCACAAGAGGGGTGCATGCGCGCTCGCCGGTACTCGTACTGCC
CAAGCGGATG
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