mRNA_P-wetherbeei_contig9100.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9100.2.1
Unique NamemRNA_P-wetherbeei_contig9100.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A140GUV7_9HYPH (IclR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GUV7_9HYPH)

HSP 1 Score: 377 bits (967), Expect = 2.730e-129
Identity = 192/252 (76.19%), Postives = 229/252 (90.87%), Query Frame = 1
Query:   61 RLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYRARVA 816
            RLSSV +++ LLKAFSE++VEIGISDLAKRL VAKSTVHRLAVTLV++G+LEQNPDTGKYRLG++LFRLG+LVR+RMN+SNE R LLR+LREKV+ETVH AVLDG++IMYV+NLE TQAIRMR+DIGVRKPA+CTAEG  +LA+QP E VERV+  GL ARTPQT+TD   L+KVL+GIR RG AIEDEESE+GMRCIAAP+ NDAGEVVAA+G+AGPV+RLSKKAL+ ++PHV+ETAAAISARLG+R + A
Sbjct:   27 RLSSVASSIRLLKAFSEEQVEIGISDLAKRLGVAKSTVHRLAVTLVADGMLEQNPDTGKYRLGLSLFRLGSLVRQRMNISNEGRNLLRELREKVDETVHCAVLDGADIMYVFNLEGTQAIRMRADIGVRKPAYCTAEGQVLLAYQPPEFVERVLARGLPARTPQTITDPEALKKVLEGIRTRGYAIEDEESEIGMRCIAAPLLNDAGEVVAAVGVAGPVTRLSKKALSGYLPHVMETAAAISARLGHRGKSA 278          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A1Q7BJI7_9PROT (Transcriptional regulator n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BJI7_9PROT)

HSP 1 Score: 365 bits (936), Expect = 9.990e-125
Identity = 191/250 (76.40%), Postives = 218/250 (87.20%), Query Frame = 1
Query:   61 RLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYRAR 810
            RLSSV TA+ LLKAFSEDEVEIGIS LA+RL +AKSTVHRLAVTLVSEG+LEQN D GKY+LGIALFRLGALVRRRMNVSNEARP L DLREK+NE+VHLA+LD +EIMYVYNLE T AIRMRSDIGVRKPA+CTAEG A+LAFQP++VV+RVI  GL  RTP+T+T A    K L   RQRGCAIEDEESE+GM CIAAPIR+D+G+VVAA+GIAGP++RLSKK++ A +PHVI TA  +SARLGYR R
Sbjct:   18 RLSSVATAIRLLKAFSEDEVEIGISALARRLGLAKSTVHRLAVTLVSEGLLEQNRDNGKYQLGIALFRLGALVRRRMNVSNEARPYLYDLREKINESVHLAILDETEIMYVYNLEGTHAIRMRSDIGVRKPAYCTAEGQAILAFQPNDVVDRVIEAGLEPRTPKTITSAEKFIKALGATRQRGCAIEDEESEIGMVCIAAPIRDDSGDVVAAVGIAGPLTRLSKKSIAAVMPHVIATADLVSARLGYRGR 267          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A6N7GLT5_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GLT5_9HYPH)

HSP 1 Score: 357 bits (917), Expect = 7.230e-122
Identity = 187/253 (73.91%), Postives = 216/253 (85.38%), Query Frame = 1
Query:   61 RLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYRARVAG 819
            RLSSVTTA+ LL+AFSEDEV+IGIS LAKRL +AKST HRLAVTLV+EG+LEQ+ D+GKYRLG+ALFRLGALVRRRM VSNEARP L  LRE +NE+VHLA+LDG+EIMYVY+LESTQA+R RSD+GVRKPAH TAEG A+LAFQP EVVERVI DGL A T +T+T      K L  +RQRGCA+EDEESE+GM C+AAPIR+DAG VVAA+GIAGPV+RLS+KA+   +PHVI TA  IS RLGYRAR AG
Sbjct:   16 RLSSVTTAMRLLQAFSEDEVDIGISALAKRLGIAKSTAHRLAVTLVAEGMLEQDRDSGKYRLGVALFRLGALVRRRMEVSNEARPYLYSLRETINESVHLAILDGTEIMYVYHLESTQALRARSDLGVRKPAHSTAEGQAILAFQPPEVVERVIADGLVAHTVKTITSPERFIKALAAVRQRGCAVEDEESEIGMVCVAAPIRDDAGAVVAAVGIAGPVTRLSRKAVAGVIPHVIATADQISTRLGYRARAAG 268          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A6L5FIF4_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FIF4_9HYPH)

HSP 1 Score: 349 bits (896), Expect = 8.250e-119
Identity = 186/248 (75.00%), Postives = 210/248 (84.68%), Query Frame = 1
Query:   61 RLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYR 804
            RLSSV +AV LLKAFSEDEVE GIS LAKRL VAKST HRLA TLV+EG+LEQ+ D+GKYRLGIALFRLGALVR+RM+VS+EA+  L DLRE  NE+VHLA+LDG EIMYVYNLESTQAIRMRSDIGVRKPA+CTAEG A+LAFQP +V++ VI  GL  RTP TVTDA  LR     IR+RG AIEDEESE+GMR IAAPIRND G V+AA+G+AGPV+RLSK+ + AF PHVI TAAAIS RLGYR
Sbjct:   12 RLSSVVSAVALLKAFSEDEVEFGISALAKRLGVAKSTAHRLAATLVAEGLLEQDRDSGKYRLGIALFRLGALVRQRMDVSSEAKSFLYDLRETTNESVHLAILDGVEIMYVYNLESTQAIRMRSDIGVRKPAYCTAEGQAILAFQPPDVIDGVIAAGLAPRTPHTVTDAGRLRDAFSEIRKRGGAIEDEESEVGMRAIAAPIRNDTGAVIAAVGVAGPVTRLSKRTIAAFAPHVIATAAAISRRLGYR 259          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A7W0XNP1_9HYPH (IclR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W0XNP1_9HYPH)

HSP 1 Score: 343 bits (879), Expect = 4.980e-116
Identity = 178/250 (71.20%), Postives = 211/250 (84.40%), Query Frame = 1
Query:   61 RLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYRAR 810
            RLSSV TA  LL AFSE+E EIG+S L+KRL +AKSTVHRLAVTLV+EG+LEQNP+  KYRLGI LFRLGALVR+RMNVSNEA+P L +LRE  NETVHLA+L+ ++IM+VYNLES QA+R RSD+GVRKPA+CTAEGLAMLA+Q D+VVE VI  GLTARTP+T  D + LR  L  +RQRG A+EDEESE+GMRCIAAP+R+  G +VAA+G+AGPV RLSKKA+ AF P+V+ TA AISARLGYR R
Sbjct:   18 RLSSVATAFRLLNAFSEEEEEIGVSALSKRLGIAKSTVHRLAVTLVAEGILEQNPENEKYRLGITLFRLGALVRQRMNVSNEAKPFLVELRELTNETVHLAILNQNQIMFVYNLESRQAVRARSDVGVRKPAYCTAEGLAMLAYQHDDVVEVVIASGLTARTPRTNIDPAGLRSALREVRQRGYAVEDEESEIGMRCIAAPVRDGVGAIVAAVGVAGPVQRLSKKAIAAFAPNVVRTADAISARLGYRVR 267          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A7Y9LLD9_9BURK (DNA-binding IclR family transcriptional regulator n=3 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=A0A7Y9LLD9_9BURK)

HSP 1 Score: 316 bits (809), Expect = 1.530e-105
Identity = 165/250 (66.00%), Postives = 200/250 (80.00%), Query Frame = 1
Query:   58 GRLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYRA 807
            GRLSSVT+A+ LLK FSEDEVEIGIS LAKRL VAKSTVHRLA TL +EG+LEQNPD+G+YRLG+ LF LGALVRRRM+V N A P L  LREK  ETVHLA LD S IMY++NLES QAIRM S IG RKPA CT+EG A+LA+QP +V+ R++++ + ARTP T TD   LRK LD +R+ G A++DEESELGMR IAAPIR+  G V+AA+G+AGP+ RLSKK L +FVP ++E   A+S+RLG+ A
Sbjct:   12 GRLSSVTSAIRLLKTFSEDEVEIGISTLAKRLGVAKSTVHRLASTLTAEGLLEQNPDSGRYRLGLGLFALGALVRRRMDVPNLALPHLHTLREKTGETVHLATLDHSSIMYLFNLESLQAIRMNSYIGARKPAFCTSEGRALLAYQPVDVIGRILKEPMVARTPNTTTDPVELRKTLDAVRRNGFAVDDEESELGMRGIAAPIRDLGGNVIAAIGVAGPIQRLSKKTLRSFVPALLEATEAVSSRLGHHA 261          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A3G8GTN7_9BURK (IclR family transcriptional regulator n=6 Tax=Burkholderiales TaxID=80840 RepID=A0A3G8GTN7_9BURK)

HSP 1 Score: 308 bits (790), Expect = 1.060e-102
Identity = 159/256 (62.11%), Postives = 204/256 (79.69%), Query Frame = 1
Query:   37 DSADSGSGRLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYR 804
            D+ D G GRLSSV +A+ +LKAFSE EVEIGIS LAKRL +AKSTVHRLA TL +EG+LEQNP+ G+YRLG+ LF LGALVRRRM++S +A P L +LRE   ETVHLA L+ S I+Y++NLES QAIRMRS +G RKPA CT+EG A+LAFQ  +V+ RV++DGL+ RTP T TD +VLR  L+ +R+ G A +DEESE+GMR +AAP+R+  G+V+AA+G+AGP+ RL+KKAL  FV  V++ A  +SARLGY+
Sbjct:    3 DTQDGGDGRLSSVASAIRVLKAFSETEVEIGISTLAKRLGLAKSTVHRLASTLTAEGLLEQNPENGRYRLGLGLFALGALVRRRMDISTQALPYLHELREITGETVHLATLEQSNIIYLFNLESHQAIRMRSYVGARKPAFCTSEGRALLAFQSADVLARVLKDGLSPRTPNTPTDPAVLRNTLEQVRREGHAQDDEESEVGMRGLAAPVRDHTGQVIAAIGVAGPIQRLTKKALRGFVAPVLQAADGVSARLGYQ 258          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A3P4AXP5_9BURK (Transcriptional regulator KdgR n=3 Tax=Pigmentiphaga TaxID=152267 RepID=A0A3P4AXP5_9BURK)

HSP 1 Score: 305 bits (781), Expect = 4.390e-101
Identity = 162/268 (60.45%), Postives = 209/268 (77.99%), Query Frame = 1
Query:    1 VPPSPMLSSMLADSADSGSGRLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYR 804
            +PP P  SS + DS +    RLSSV +A+ +LKAFSE E+EIGIS LAKRL +AKSTVHRLA TL SEG+LEQNP+ G+YRLG+ LF LGALVRRRM++S +A P L +LRE   ETVHLA L+ S I+Y++NLES QAIRMRS +G RKPA CT+EG A+LAFQ  EV+ RV++DGL ARTP T T  + LRK L+ +++ G A +DEESE+GMR +AAP+R+ +G+V+AA+GIAGPV RL+KKA+  F+  V++ A A+S RLGY+
Sbjct:    9 LPPLPY-SSAMQDSTEGTESRLSSVASAIRVLKAFSETEIEIGISTLAKRLGLAKSTVHRLASTLASEGLLEQNPENGRYRLGLGLFALGALVRRRMDISTQALPYLHELREITGETVHLATLEQSNIIYLFNLESHQAIRMRSYVGARKPAFCTSEGRALLAFQEPEVLARVVKDGLVARTPNTQTAPAGLRKTLELVQREGYAQDDEESEVGMRGLAAPVRDHSGQVIAAIGIAGPVQRLTKKAMRGFIAPVVQAADALSTRLGYQ 275          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A7C4XX75_9HYPH (IclR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XX75_9HYPH)

HSP 1 Score: 305 bits (782), Expect = 4.630e-101
Identity = 169/252 (67.06%), Postives = 198/252 (78.57%), Query Frame = 1
Query:   61 RLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYRARVA 816
            RLSSV TA+ LLK+FSE+E EIG+SDLA+ L VAKSTVHRLA TLVSEG+LEQNP+T KYRLGIALF LGALVRRRMN+S+EAR  L  LR+   ETV LA+LD +EIMYVYNLESTQAIR+ SDIGVRKPA CTA G A+LAFQ +EV+  VI  GL  R P+T TD   L ++L  +R RG A EDEESE GMR +AAPIR   G+VV ++G+AGPV RL+K+ALT   P VI TA AISARLG++ R A
Sbjct:   36 RLSSVATAIALLKSFSEEEYEIGVSDLARSLGVAKSTVHRLARTLVSEGLLEQNPETEKYRLGIALFGLGALVRRRMNLSSEARQDLFALRQATGETVQLAILDQAEIMYVYNLESTQAIRVTSDIGVRKPAFCTANGRAILAFQSEEVIAAVIGRGLEPRAPKTDTDPKRLLRLLAEVRARGYATEDEESEAGMRAVAAPIRGAGGQVVGSVGVAGPVQRLTKEALTKLAPLVIRTAHAISARLGHQYRTA 287          
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Match: A0A839U7A5_9HYPH (DNA-binding IclR family transcriptional regulator n=1 Tax=Phyllobacterium trifolii TaxID=300193 RepID=A0A839U7A5_9HYPH)

HSP 1 Score: 303 bits (775), Expect = 3.120e-100
Identity = 160/250 (64.00%), Postives = 196/250 (78.40%), Query Frame = 1
Query:   61 RLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAKSTVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARPLLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCTAEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCAIEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVIETAAAISARLGYRAR 810
            RLSSVTTA+ LLKAFSEDEVEIG+S LA +L+VAKSTVHRLAVTLVSEG+LEQNP+T +Y+LG+ LF LG LVRRRMNVSNEARP L DLR+   ET+ L +    EIM+VY+LES QA+ ++SD+GVR+PAHCTA G A+ AF P+E +E V+   L  RTP+T  D   +RK+   +R+RG AIEDEESE G+R IAAP+R+  G VVAA+GI GP+ RLS +AL  F P ++ET AAISARLGY AR
Sbjct:   21 RLSSVTTAIRLLKAFSEDEVEIGVSALALKLKVAKSTVHRLAVTLVSEGLLEQNPETERYKLGVGLFGLGTLVRRRMNVSNEARPFLFDLRKHTGETIILGIPTDIEIMHVYDLESPQALSIKSDLGVRRPAHCTAVGRAIFAFAPEETIEHVLAGPLARRTPRTPVDPKQIRKIFAEVRERGYAIEDEESEPGIRVIAAPVRDSNGVVVAAVGIGGPLQRLSIEALEGFAPPLLETVAAISARLGYSAR 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9100.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A140GUV7_9HYPH2.730e-12976.19IclR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A1Q7BJI7_9PROT9.990e-12576.40Transcriptional regulator n=2 Tax=unclassified Alp... [more]
A0A6N7GLT5_9HYPH7.230e-12273.91Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A6L5FIF4_9HYPH8.250e-11975.00Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7W0XNP1_9HYPH4.980e-11671.20IclR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A7Y9LLD9_9BURK1.530e-10566.00DNA-binding IclR family transcriptional regulator ... [more]
A0A3G8GTN7_9BURK1.060e-10262.11IclR family transcriptional regulator n=6 Tax=Burk... [more]
A0A3P4AXP5_9BURK4.390e-10160.45Transcriptional regulator KdgR n=3 Tax=Pigmentipha... [more]
A0A7C4XX75_9HYPH4.630e-10167.06IclR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A839U7A5_9HYPH3.120e-10064.00DNA-binding IclR family transcriptional regulator ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9100contigP-wetherbeei_contig9100:1344..2165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog492774.JQMB01000002_gene772
PFAMsHTH_IclR,IclR
Model size822
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K13641
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.31e-99
EggNOG OGsCOG1414@1|root,COG1414@2|Bacteria,1MUNW@1224|Proteobacteria,2TSY8@28211|Alphaproteobacteria,4BAN0@82115|Rhizobiaceae
Descriptionhelix_turn_helix isocitrate lyase regulation
Cds size807
COG categoryK
BRITEko00000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187076.0457475-UTR-P-wetherbeei_contig9100:1343..13581683187076.0457475-UTR-P-wetherbeei_contig9100:1343..1358Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9100 1344..1358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187076.069977-CDS-P-wetherbeei_contig9100:1358..21651683187076.069977-CDS-P-wetherbeei_contig9100:1358..2165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9100 1359..2165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9100.2.1prot_P-wetherbeei_contig9100.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9100 1359..2165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9100.2.1

>prot_P-wetherbeei_contig9100.2.1 ID=prot_P-wetherbeei_contig9100.2.1|Name=mRNA_P-wetherbeei_contig9100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
MLSSMLADSADSGSGRLSSVTTAVLLLKAFSEDEVEIGISDLAKRLRVAK
STVHRLAVTLVSEGVLEQNPDTGKYRLGIALFRLGALVRRRMNVSNEARP
LLRDLREKVNETVHLAVLDGSEIMYVYNLESTQAIRMRSDIGVRKPAHCT
AEGLAMLAFQPDEVVERVIRDGLTARTPQTVTDASVLRKVLDGIRQRGCA
IEDEESELGMRCIAAPIRNDAGEVVAAMGIAGPVSRLSKKALTAFVPHVI
ETAAAISARLGYRARVAG*
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mRNA from alignment at P-wetherbeei_contig9100:1344..2165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9100.2.1 ID=mRNA_P-wetherbeei_contig9100.2.1|Name=mRNA_P-wetherbeei_contig9100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig9100:1344..2165+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGCCGTCCCCCATGTTATCGTCTATGCTCGCCGACAGCGCCGACAG CGGTTCGGGGCGGCTCTCCTCCGTGACCACGGCGGTGCTGCTGCTCAAGG CGTTTTCCGAGGATGAGGTCGAGATCGGCATCAGCGACCTCGCCAAGCGC CTGCGCGTCGCCAAGAGCACAGTGCATCGCCTCGCGGTGACGCTGGTTTC CGAGGGTGTGCTCGAGCAGAACCCGGACACCGGAAAATACCGGCTCGGCA TCGCGCTGTTCCGGCTCGGCGCGCTGGTGCGGCGTCGGATGAACGTGTCG AACGAGGCCCGGCCGCTGCTGCGCGACCTGCGCGAGAAGGTGAACGAGAC CGTGCATCTCGCCGTGCTCGACGGCAGCGAGATCATGTACGTCTACAACC TCGAAAGCACCCAGGCGATCCGCATGCGCTCCGACATCGGCGTGCGCAAG CCCGCGCATTGCACTGCCGAGGGTTTGGCGATGCTGGCGTTCCAGCCGGA CGAGGTGGTGGAACGGGTGATCCGCGACGGGCTCACGGCGCGGACGCCGC AGACCGTTACGGACGCTTCGGTGCTACGCAAGGTGCTGGACGGCATCCGT CAGCGCGGCTGTGCCATCGAGGACGAGGAAAGCGAGCTCGGCATGCGTTG CATCGCGGCGCCGATCCGCAACGATGCGGGCGAGGTGGTGGCGGCGATGG GCATCGCCGGTCCGGTCAGCCGGCTGTCGAAGAAGGCGCTGACCGCGTTC GTGCCGCACGTTATCGAGACCGCGGCGGCGATCTCGGCGCGGCTGGGCTA TCGGGCGAGGGTGGCGGGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9100:1344..2165+

>mRNA_P-wetherbeei_contig9100.2.1 ID=mRNA_P-wetherbeei_contig9100.2.1|Name=mRNA_P-wetherbeei_contig9100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig9100:1344..2165+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTATCGTCTATGCTCGCCGACAGCGCCGACAGCGGTTCGGGGCGGCT
CTCCTCCGTGACCACGGCGGTGCTGCTGCTCAAGGCGTTTTCCGAGGATG
AGGTCGAGATCGGCATCAGCGACCTCGCCAAGCGCCTGCGCGTCGCCAAG
AGCACAGTGCATCGCCTCGCGGTGACGCTGGTTTCCGAGGGTGTGCTCGA
GCAGAACCCGGACACCGGAAAATACCGGCTCGGCATCGCGCTGTTCCGGC
TCGGCGCGCTGGTGCGGCGTCGGATGAACGTGTCGAACGAGGCCCGGCCG
CTGCTGCGCGACCTGCGCGAGAAGGTGAACGAGACCGTGCATCTCGCCGT
GCTCGACGGCAGCGAGATCATGTACGTCTACAACCTCGAAAGCACCCAGG
CGATCCGCATGCGCTCCGACATCGGCGTGCGCAAGCCCGCGCATTGCACT
GCCGAGGGTTTGGCGATGCTGGCGTTCCAGCCGGACGAGGTGGTGGAACG
GGTGATCCGCGACGGGCTCACGGCGCGGACGCCGCAGACCGTTACGGACG
CTTCGGTGCTACGCAAGGTGCTGGACGGCATCCGTCAGCGCGGCTGTGCC
ATCGAGGACGAGGAAAGCGAGCTCGGCATGCGTTGCATCGCGGCGCCGAT
CCGCAACGATGCGGGCGAGGTGGTGGCGGCGATGGGCATCGCCGGTCCGG
TCAGCCGGCTGTCGAAGAAGGCGCTGACCGCGTTCGTGCCGCACGTTATC
GAGACCGCGGCGGCGATCTCGGCGCGGCTGGGCTATCGGGCGAGGGTGGC
GGGGTAA
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