mRNA_P-wetherbeei_contig9086.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9086.2.1
Unique NamemRNA_P-wetherbeei_contig9086.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9086.2.1 vs. uniprot
Match: A0A2K3CND5_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CND5_CHLRE)

HSP 1 Score: 57.0 bits (136), Expect = 7.020e-5
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:   26 GKVVVVQRGICTFTQKAEVATAAGAAALVVVNTEPDGHLTLMAGSTDGGGEDSLLPTVMVSSDAGRAILAAASA 247
            G+V++VQRG C F+ KA  A AAGA A++V N + DG+  + A    GG    L+P   V +  GR +LAAA+A
Sbjct:  980 GRVLLVQRGRCYFSDKARAAAAAGATAVIVYNDKQDGYFLMEAPDASGGSGSGLVPMGSVPASTGRWLLAAAAA 1053
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9086.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2K3CND5_CHLRE7.020e-544.59Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9086contigP-wetherbeei_contig9086:1147..2568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1422
Hectar predicted targeting categoryother localisation
Exons1
Cds size909
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187075.0125115-UTR-P-wetherbeei_contig9086:1146..15111683187075.0125115-UTR-P-wetherbeei_contig9086:1146..1511Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9086 1147..1511 -
1683187075.0338297-UTR-P-wetherbeei_contig9086:2420..25681683187075.0338297-UTR-P-wetherbeei_contig9086:2420..2568Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9086 2421..2568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187075.0233884-CDS-P-wetherbeei_contig9086:1511..24201683187075.0233884-CDS-P-wetherbeei_contig9086:1511..2420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9086 1512..2420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9086.2.1prot_P-wetherbeei_contig9086.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9086 1512..2420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9086.2.1

>prot_P-wetherbeei_contig9086.2.1 ID=prot_P-wetherbeei_contig9086.2.1|Name=mRNA_P-wetherbeei_contig9086.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=303bp
MAGSTDGGGEDSLLPTVMVSSDAGRAILAAASASGRGAPASRTATAATVA
AATRLSVDVASIDQVLLKLADTAARAFDRKLAARREAGVTGNDSCEAYSP
AAVAAARERYISRQLWRAVEESGSDESRLVARYTFEGIDAMRAAPFVLPA
AEFYSNTMHIFGRNTWGVAFMWYLGGAGKDGGGGGGGGGGDGGCSGDGDG
EGECEDCEGDGGDGGGGDDGSSDGGGGDDGGGGGGRDGTRDTQHWTWTEE
GWTLFLSQNAQWTREYTGGMEEEDDEQDLFGESSDAAGNDRRSCAEAEET
PS*
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mRNA from alignment at P-wetherbeei_contig9086:1147..2568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9086.2.1 ID=mRNA_P-wetherbeei_contig9086.2.1|Name=mRNA_P-wetherbeei_contig9086.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1422bp|location=Sequence derived from alignment at P-wetherbeei_contig9086:1147..2568- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCTGCAGAGGCCGTGCGAAGGGAAGGTTGTTGTGGTGCAGCGCG
GCATCTGCACGTTCACACAGAAGGCCGAGGTCGCCACCGCCGCGGGCGCC
GCCGCGCTCGTCGTTGTTAATACCGAGCCCGACGGCCATCTAACGCTGAT
GGCCGGGAGCACAGACGGCGGCGGTGAGGATTCGCTGCTACCGACCGTCA
TGGTGAGTTCCGACGCTGGCCGAGCCATCCTTGCGGCCGCCTCCGCCAGC
GGAAGGGGTGCGCCGGCGTCACGCACAGCGACGGCGGCGACGGTGGCAGC
TGCGACGCGGCTCTCTGTGGACGTGGCGTCGATCGACCAGGTTCTGTTGA
AGCTAGCCGATACGGCGGCACGGGCGTTCGATCGCAAGCTGGCGGCGCGG
CGGGAAGCCGGCGTCACCGGCAATGACAGCTGCGAGGCATACAGCCCGGC
GGCGGTGGCGGCGGCGCGCGAGCGCTACATCAGCCGGCAGCTGTGGCGGG
CGGTGGAGGAGTCCGGCAGCGATGAGTCGAGGTTGGTGGCCCGCTACACC
TTCGAGGGTATCGACGCGATGCGAGCGGCGCCGTTCGTTCTGCCGGCCGC
CGAGTTTTACTCCAACACGATGCACATTTTCGGCCGCAACACGTGGGGGG
TCGCTTTCATGTGGTATCTTGGTGGGGCCGGGAAGGACGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGACGGCGGCTGCAGCGGCGATGGAGACGGTGA
AGGGGAATGTGAGGATTGCGAGGGCGACGGCGGCGATGGCGGCGGCGGCG
ACGACGGCAGCAGTGACGGTGGCGGTGGCGATGACGGCGGGGGCGGTGGC
GGCCGCGACGGAACGCGGGACACGCAGCACTGGACGTGGACGGAGGAGGG
CTGGACCCTCTTCCTGTCGCAGAATGCGCAGTGGACAAGAGAATACACTG
GCGGTATGGAGGAAGAGGACGACGAGCAGGATTTGTTCGGGGAGAGCAGC
GACGCCGCGGGCAATGACCGCAGAAGTTGCGCAGAGGCGGAGGAAACGCC
ATCGTAAGGAATTCAGGGATTAGCAGCGTGCTCCGGAGGGAAATATTATC
TCGCCGTGACTGCTGCCGCCGGAAGCGGACGGCAGAAGCCGGCGCAGAAT
CACACAAGTCGAAAGAAAGAGCCATCACAGCACAAACGGCGTGCGCAAAA
GTGCGCATAGCCTTTTACGGGCAGCGACGGTTACCAGTCCGTCGCGGGCC
TGCCGATAGCCTACCCCGGCCGCTTGCCCACGCCTTGACACAAATCCAGA
GTGTAGGCGGCGCGGCCCACGGGCTGCAACGGGCGGCGGACCCGCGGCAG
GACAGAAGCAGGAAGATGACGGATAATTATGCCTTTGCCAGGAAAAGAAT
CAATAATGATACAACATAAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9086:1147..2568-

>mRNA_P-wetherbeei_contig9086.2.1 ID=mRNA_P-wetherbeei_contig9086.2.1|Name=mRNA_P-wetherbeei_contig9086.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig9086:1147..2568- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGGAGCACAGACGGCGGCGGTGAGGATTCGCTGCTACCGACCGT
CATGGTGAGTTCCGACGCTGGCCGAGCCATCCTTGCGGCCGCCTCCGCCA
GCGGAAGGGGTGCGCCGGCGTCACGCACAGCGACGGCGGCGACGGTGGCA
GCTGCGACGCGGCTCTCTGTGGACGTGGCGTCGATCGACCAGGTTCTGTT
GAAGCTAGCCGATACGGCGGCACGGGCGTTCGATCGCAAGCTGGCGGCGC
GGCGGGAAGCCGGCGTCACCGGCAATGACAGCTGCGAGGCATACAGCCCG
GCGGCGGTGGCGGCGGCGCGCGAGCGCTACATCAGCCGGCAGCTGTGGCG
GGCGGTGGAGGAGTCCGGCAGCGATGAGTCGAGGTTGGTGGCCCGCTACA
CCTTCGAGGGTATCGACGCGATGCGAGCGGCGCCGTTCGTTCTGCCGGCC
GCCGAGTTTTACTCCAACACGATGCACATTTTCGGCCGCAACACGTGGGG
GGTCGCTTTCATGTGGTATCTTGGTGGGGCCGGGAAGGACGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGACGGCGGCTGCAGCGGCGATGGAGACGGT
GAAGGGGAATGTGAGGATTGCGAGGGCGACGGCGGCGATGGCGGCGGCGG
CGACGACGGCAGCAGTGACGGTGGCGGTGGCGATGACGGCGGGGGCGGTG
GCGGCCGCGACGGAACGCGGGACACGCAGCACTGGACGTGGACGGAGGAG
GGCTGGACCCTCTTCCTGTCGCAGAATGCGCAGTGGACAAGAGAATACAC
TGGCGGTATGGAGGAAGAGGACGACGAGCAGGATTTGTTCGGGGAGAGCA
GCGACGCCGCGGGCAATGACCGCAGAAGTTGCGCAGAGGCGGAGGAAACG
CCATCGTAA
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