mRNA_P-wetherbeei_contig896.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig896.2.1
Unique NamemRNA_P-wetherbeei_contig896.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: R1E090_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E090_EMIHU)

HSP 1 Score: 197 bits (500), Expect = 3.840e-59
Identity = 116/223 (52.02%), Postives = 152/223 (68.16%), Query Frame = 1
Query:  256 LWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAAFGLRDAASA-----------------------SDVPDVEGDRLFGIPSFSVKVGQQTV 855
            LW+FSRPHTLIGSALCIP ++ +AAPPG+++ +A F+  V  A+VP+LL+N+++TGLNQ+ D+ IDRVNKP LP+A+G +S   G ATVL  L GG+ +G  A P  C S  L ATL  SA++GTAYS PPVRLKR P LA++CI++VRG++IN GF+AHA A A+G   + +A                        DVPDV GD  +GI SFSV+VGQ  V
Sbjct:    2 LWRFSRPHTLIGSALCIPALSLYAAPPGAAISSAVFVPLVLYAMVPSLLVNVYITGLNQLFDIPIDRVNKPTLPLASGEMSPAVGAATVLLCLAGGLALGW-AFPPLC-SPALRATLCGSALLGTAYSCPPVRLKRSPLLASLCIMSVRGALINWGFFAHA-AEAYGASVSTAALQAWRCAGPVAFFTLFGTVIALVKDVPDVPGDARYGIRSFSVRVGQARV 221          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A7S3WUB5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WUB5_EMIHU)

HSP 1 Score: 197 bits (500), Expect = 1.270e-57
Identity = 116/223 (52.02%), Postives = 152/223 (68.16%), Query Frame = 1
Query:  256 LWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAAFGLRDAASA-----------------------SDVPDVEGDRLFGIPSFSVKVGQQTV 855
            LW+FSRPHTLIGSALCIP ++ +AAPPG+++ +A F+  V  A+VP+LL+N+++TGLNQ+ D+ IDRVNKP LP+A+G +S   G ATVL  L GG+ +G  A P  C S  L ATL  SA++GTAYS PPVRLKR P LA++CI++VRG++IN GF+AHA A A+G   + +A                        DVPDV GD  +GI SFSV+VGQ  V
Sbjct:   87 LWRFSRPHTLIGSALCIPALSLYAAPPGAAISSAVFVPLVLYAMVPSLLVNVYITGLNQLFDIPIDRVNKPTLPLASGEMSPAVGAATVLLCLAGGLALGW-AFPPLC-SPALRATLCGSALLGTAYSCPPVRLKRSPLLASLCIMSVRGALINWGFFAHA-AEAYGASVSTAALQAWRCAGPVAFFTLFGTVIALVKDVPDVAGDARYGIRSFSVRVGQARV 306          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A7S2CJS5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJS5_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.620e-56
Identity = 118/241 (48.96%), Postives = 148/241 (61.41%), Query Frame = 1
Query:  247 WRTLWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHA----------------------------RAAAFGLRDA---------ASASDVPDVEGDRLFGIPSFSVKVGQQTVF 858
            +R LW+F+RPHTLIGSALC+P I AFA P G+ +FTA   ++   AL+PAL IN+++TGLNQ+TDVEIDRVNKP LP+AAG L+M      V  SLL G+ +G +     C + PL  TLV SA+IGT YS+ P RLKRFP  AA+CILTVRG+VINIGFY HA                             +A  GL            A   DVPDV GD+L+GI S +V++G + VF
Sbjct:   64 YRGLWEFTRPHTLIGSALCVPAIHAFAIPSGAPLFTARLFQSCVWALIPALFINIYITGLNQITDVEIDRVNKPYLPLAAGHLTMPEAKWVVGLSLLAGLALGFLHP---CSTFPLRMTLVLSALIGTFYSLEPFRLKRFPFFAALCILTVRGAVINIGFYGHAVQNLGLDVTAQNALASPVIRKILSTLPFESAKCGLATLFFALFGTVIALMKDVPDVVGDKLYGIKSLTVRLGPERVF 301          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A7S4BI21_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BI21_CHRCT)

HSP 1 Score: 191 bits (486), Expect = 3.280e-56
Identity = 110/227 (48.46%), Postives = 149/227 (65.64%), Query Frame = 1
Query:  256 LWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAAFGLRDAASAS---------------------------DVPDVEGDRLFGIPSFSVKVGQQTV 855
            LW+FSRPHT++GSA+CIP ++ FAAP G+++  A+ +  V  ALVP+L++N+++ GLNQ+ DVEIDRVNKP+LP+A+G LS+  G A VL SL  G+ +G  A P  C S  L ATL+ SA++GT YS+PP RLKRFP LA+ CI++VRG++IN GF+ HA    F     A+A                            DVPDV+GDR +GI SFSV++GQ  V
Sbjct:   12 LWKFSRPHTILGSAVCIPALSIFAAPAGTTIPFASLVPLVLYALVPSLMMNVYIVGLNQLFDVEIDRVNKPKLPLASGELSLPAGAAIVLGSLAAGLALGW-AVPPLC-SPALQATLIGSALLGTVYSLPPFRLKRFPLLASFCIMSVRGALINWGFFMHASLTVFKSALTATAGGMAAQRWRCLAPVAFFTLFGTVIALIKDVPDVDGDRRYGISSFSVRMGQSQV 236          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A7S0EPK6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPK6_9EUKA)

HSP 1 Score: 192 bits (489), Expect = 6.730e-56
Identity = 120/220 (54.55%), Postives = 151/220 (68.64%), Query Frame = 1
Query:  256 LWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAH-------ARAAAFGLRDA-------------ASASDVPDVEGDRLFGIPSFSVKVGQQTV 855
            LW+F+RPHTLIGSALCIP + AFAAPPG+ + +A    A+  AL+P+LLIN+++TGLNQ+ D+E+DRVNKP LP+A G +S   G A VLASL+GG+ +G  A P  C +  L ATLV SA++GTAYS PP+RLKRFP LA +CI+ VRG++IN GF+ H       A A A G R               A   DVPDV GDR FGI SFSV++GQQ V
Sbjct:   97 LWRFTRPHTLIGSALCIPALLAFAAPPGA-LLSAPLGYALLWALLPSLLINVYITGLNQLYDIELDRVNKPTLPLANGDMSPAVGTAIVLASLVGGLALGW-AHPRYC-TDALRATLVGSALLGTAYSAPPLRLKRFPLLAGLCIMGVRGALINWGFFMHGIACLGPAAAGAAGWRCLVPVGFFTIFGTVIALVKDVPDVPGDRQFGIRSFSVQLGQQRV 313          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A7S3YG08_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG08_HETAK)

HSP 1 Score: 189 bits (480), Expect = 1.930e-54
Identity = 114/236 (48.31%), Postives = 149/236 (63.14%), Query Frame = 1
Query:  238 QSFWRTLWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAAF--------------------GLRDA---------ASASDVPDVEGDRLFGIPSFSVKVGQQTVF 858
            Q F +TLW F+RPHTLIGSALCIP I  +AAP  ++      + ++  A +P+LL+NL++TGLNQ+TDVEID+++KP LPI AGRLS       VL SL+ GV +G  A P  C +  L ATL+ SA++GT YS+PP RLKRFP LAA+CI+ VRG++IN+GF+AHARAA +                    GL  A         A   DVPD +GDR   I SF+V+ GQ  +F
Sbjct:   98 QFFLKTLWDFTRPHTLIGSALCIPAIHLYAAPLSTNPSIVRLIHSIIFATLPSLLMNLYITGLNQITDVEIDKISKPFLPIPAGRLSKAAATIVVLVSLVAGVALGW-ADPVFC-TPALRATLLGSALLGTLYSVPPFRLKRFPLLAALCIIVVRGTLINVGFFAHARAATYKGAAAAVPPLLALPFRDLRCGLLTAYFAVFGVVIALMKDVPDAQGDRANDIRSFTVRFGQARMF 331          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A835ZGZ5_9STRA (Tocopherol phytyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ5_9STRA)

HSP 1 Score: 186 bits (471), Expect = 5.730e-53
Identity = 122/248 (49.19%), Postives = 153/248 (61.69%), Query Frame = 1
Query:  241 SFWRTLWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRA-VAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAH--ARAAAF---------------GLRDA------------------------ASASDVPDVEGDRLFGIPSFSVKVGQQTVF 858
            SF R ++ FSRPHTLIGSAL IP IA FA    +S+  A  L A V  A+VP+LLIN+ +TGLNQ+TDVEIDRVNKPELPIAAGRLSMR  +ATV A L+GGVG+G +  PAA  S  L   +V S ++G  YS+PP+RLKRFP LAA+CIL+VRG+V+N  FYAH   ++ A                G+RD                         A   DVPD +GD    I SF+V++G++ VF
Sbjct:   32 SFLRVIYDFSRPHTLIGSALSIPAIAIFATGLPASLPAARQLTALVLAAMVPSLLINIHITGLNQITDVEIDRVNKPELPIAAGRLSMRAAIATVTACLVGGVGLGYLM-PAALTSHALQGVIVGSTLLGGMYSLPPIRLKRFPLLAAMCILSVRGAVMNACFYAHFALKSGALXXXXXXXLSPPSLTSGIRDVCLLPLRDARCGLLVGFFAVFGVVIALLKDVPDFKGDAQHNIRSFTVRMGRERVF 278          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A7S2R0V2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0V2_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.240e-52
Identity = 107/233 (45.92%), Postives = 144/233 (61.80%), Query Frame = 1
Query:  244 FWRTLWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAAFGLRDAASA----------------------------SDVPDVEGDRLFGIPSFSVKVGQQTVF 858
            FW+ LW+F+RPHT+IGSA+ IP +  FAAP   + F  A LR++  A+ P+LL+NL++TGLNQ+TDV+ID+VNKP+LP+A+G LS       V  SLL  +  G+  +    G+  L   L  S ++GT YS+PP RLKRFP LAA CI++VRG+VIN GF+AHA+AAAFG   A +                              DVPD  GD LF I SF+V+ G +T+F
Sbjct:   22 FWKVLWRFTRPHTIIGSAMAIPALHLFAAPTFQAAFQPAVLRSIVFAMFPSLLMNLYITGLNQITDVDIDKVNKPQLPMASGDLSPTAANWIVSISLLVSLAWGM--SHPVLGTQGLNVALWGSMLLGTLYSLPPFRLKRFPFLAAFCIVSVRGAVINAGFFAHAQAAAFGGSIATTTVWNCLCSDPRCLLSSLFFAVFGLVIALMKDVPDYTGDALFNIRSFTVRAGPKTIF 252          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: A0A1Z5JVY9_FISSO (Homogentisate phytyltransferase / homogentisate geranylgeranyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVY9_FISSO)

HSP 1 Score: 182 bits (463), Expect = 9.790e-52
Identity = 109/234 (46.58%), Postives = 149/234 (63.68%), Query Frame = 1
Query:  232 PYQSFWRTLWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAAFGLRDAASAS-------------------------DVPDVEGDRLFGIPSFSVKVGQQTVF 858
            P  SF   LW+F+RPHT+IGSA+ IP++   AAP  ++  +    +++  A++P+LL+NL++TGLNQ+TDVEIDR+NKP+LPIAAG LSM+  +A V  + +G V +G+  A    G+  L + L ASA+ GT YS+PP+RLKRFP  AA CI+ VRG VIN  F+AHA+AAAF       AS                         DVPDV GD+   I +FSV++GQ+TVF
Sbjct:   57 PKPSFPTILWKFTRPHTIIGSAMAIPSLHFLAAPSIAAALSPLCWQSMLYAMIPSLLMNLYITGLNQITDVEIDRINKPDLPIAAGLLSMKTAIAIVSLAFVGSVSMGI--ANPVFGTRGLNSALWASALFGTVYSLPPLRLKRFPIWAAFCIVAVRGLVINASFFAHAQAAAFQTPTTVIASLLGNAQCLWSSIFFAVFGLVIALMKDVPDVLGDQTLNIRTFSVRLGQKTVF 288          
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Match: B7G488_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G488_PHATC)

HSP 1 Score: 183 bits (465), Expect = 1.040e-51
Identity = 127/313 (40.58%), Postives = 171/313 (54.63%), Query Frame = 1
Query:   22 FSVSGSGISRVPSP-TLPAWRRTTYGAPPLK-------VSLSEPSVSTNTRNGTVGAVLPSYLAEKQESEDGATPPPLPYQSFWRTLWQFSRPHTLIGSALCIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEIDRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLATLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAAFGLRDA--------------------------ASASDVPDVEGDRLFGIPSFSVKVGQQTVF 858
             SV  S    +P P  L AW   +   P L+       +S  + S   N R      V  + L+ K+        PP P       LW+FSRPHTLIGSAL IP + + AAP   +  +   ++A+A A+ PALL+N+++TGLNQ+TDVEID++NKP LPIAAG LS + G+AT+L +L G + +G  AA     +  L   L  S ++GT YS+PP RLKRFP LAA CI+ VRG++IN  F+AHA+AAAFG                              A   DVPDV GDR   + +FSV++GQ  +F
Sbjct:   21 LSVGLSSGYALPQPRALTAWTIGSSVVPELRSESYLQALSTIKDSERPNDRELKAATVSAADLSSKEN-------PPFPI-----VLWRFSRPHTLIGSALAIPALHSLAAPSLQAAMSRINIQAMAYAMFPALLMNIYITGLNQITDVEIDKINKPFLPIAAGILSKKDGIATILLALFGSLWLG--AANPVFSTQGLNVALWGSGILGTMYSLPPFRLKRFPLLAAFCIVAVRGAIINASFFAHAKAAAFGGSGVTVLNCLATDPRCYLSSIFFAVFGIVIALMKDVPDVAGDRNSNVRTFSVRLGQGRIF 319          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig896.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1E090_EMIHU3.840e-5952.02Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A7S3WUB5_EMIHU1.270e-5752.02Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S2CJS5_9STRA2.620e-5648.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4BI21_CHRCT3.280e-5648.46Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S0EPK6_9EUKA6.730e-5654.55Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S3YG08_HETAK1.930e-5448.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZGZ5_9STRA5.730e-5349.19Tocopherol phytyltransferase n=1 Tax=Tribonema min... [more]
A0A7S2R0V2_9STRA3.240e-5245.92Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5JVY9_FISSO9.790e-5246.58Homogentisate phytyltransferase / homogentisate ge... [more]
B7G488_PHATC1.040e-5140.58Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig896contigP-wetherbeei_contig896:2437..4072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD16436
Preferred nameHPT1
PFAMsUbiA
Model size860
Max annot lvl2759|Eukaryota
KEGG rclassRC01840,RC02895
KEGG koko:K09833
KEGG ReactionR07500,R10708
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006766,GO:0006775,GO:0006810,GO:0008150,GO:0008152,GO:0008610,GO:0008643,GO:0009058,GO:0009110,GO:0009266,GO:0009507,GO:0009536,GO:0009628,GO:0009915,GO:0009987,GO:0010176,GO:0010189,GO:0010232,GO:0010233,GO:0010354,GO:0015766,GO:0015770,GO:0015772,GO:0016043,GO:0016053,GO:0016740,GO:0016765,GO:0018130,GO:0019752,GO:0031347,GO:0032501,GO:0032787,GO:0033559,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046394,GO:0046483,GO:0048583,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0065007,GO:0071554,GO:0071555,GO:0071702,GO:0071704,GO:0071840,GO:0072330,GO:0080134,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Exons4
Evalue6.29e-60
EggNOG OGsCOG0382@1|root,2R0I3@2759|Eukaryota
Ec32 ortholog descriptiontocopherol phytyltransferase
Ec32 orthologEc-21_000990.1
EC2.5.1.115,2.5.1.116
Descriptionhomogentisate phytyltransferase activity
Cds size858
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187068.071933-CDS-P-wetherbeei_contig896:2436..28681683187068.071933-CDS-P-wetherbeei_contig896:2436..2868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig896 2437..2868 +
1683187068.088031-CDS-P-wetherbeei_contig896:3196..34241683187068.088031-CDS-P-wetherbeei_contig896:3196..3424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig896 3197..3424 +
1683187068.0994868-CDS-P-wetherbeei_contig896:3697..38171683187068.0994868-CDS-P-wetherbeei_contig896:3697..3817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig896 3698..3817 +
1683187068.1104128-CDS-P-wetherbeei_contig896:3994..40721683187068.1104128-CDS-P-wetherbeei_contig896:3994..4072Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig896 3995..4072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig896.2.1prot_P-wetherbeei_contig896.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig896 2437..4072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig896.2.1

>prot_P-wetherbeei_contig896.2.1 ID=prot_P-wetherbeei_contig896.2.1|Name=mRNA_P-wetherbeei_contig896.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=286bp
AAFANGRFSVSGSGISRVPSPTLPAWRRTTYGAPPLKVSLSEPSVSTNTR
NGTVGAVLPSYLAEKQESEDGATPPPLPYQSFWRTLWQFSRPHTLIGSAL
CIPTIAAFAAPPGSSVFTAAFLRAVAVALVPALLINLFVTGLNQVTDVEI
DRVNKPELPIAAGRLSMRGGVATVLASLLGGVGIGLVAAPAACGSMPLLA
TLVASAVIGTAYSMPPVRLKRFPSLAAVCILTVRGSVINIGFYAHARAAA
FGLRDAASASDVPDVEGDRLFGIPSFSVKVGQQTVF
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mRNA from alignment at P-wetherbeei_contig896:2437..4072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig896.2.1 ID=mRNA_P-wetherbeei_contig896.2.1|Name=mRNA_P-wetherbeei_contig896.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1636bp|location=Sequence derived from alignment at P-wetherbeei_contig896:2437..4072+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCTTCGCGAACGGTCGCTTTTCGGTTAGCGGATCTGGCATCTCAAG AGTCCCTTCACCGACTTTGCCGGCCTGGCGGCGAACAACTTATGGGGCGC CGCCCCTCAAGGTGTCGCTGAGTGAGCCTTCCGTCAGCACCAACACCCGC AACGGCACGGTCGGGGCGGTGCTCCCATCGTATCTTGCGGAGAAACAGGA GAGCGAAGATGGCGCGACGCCGCCGCCTCTGCCGTATCAGTCTTTTTGGC GAACGCTGTGGCAGTTTTCGCGGCCGCACACGCTGATTGGGAGCGCCTTG TGCATCCCCACCATTGCCGCCTTTGCGGCGCCGCCCGGCTCCTCGGTCTT CACCGCCGCCTTCCTGAGGGCCGTGGCGGTGGCTTTGGTGCCGGCGCTGC TCATTAACCTTTTTGTCACGGGTCTTAACCAGGTGAGCCAAGTTTTTGAG GTGGGCAGGTCTGGCGCTCTGGCTGAAGCTGAGTGTGTTGAGGTTTTCTC AATGCTAGCATCGTCCCTTTTGGCGTCAGTCCTCGTTGTCAAATGGCACT GCCTTGTTGTCAGCTAGACTAGAAGTGGTCGATTCGTCATTTACCGCTGT CTTTTGGGGTTTACGCTGCAGAACATACTATTTAGCTTTGCTCGTTCCTT TTCCTTGTGCGTCTGCATTTGCCTAAAAGAACTCGTTGCCGTTTTCTCCT CCCAGCCGTTTCACCTGTGACTGCGTTTCGTGTCGTTTACTGTGCCGCTG CGGCCCGCAGGTGACGGATGTGGAAATCGATCGGGTGAACAAGCCGGAGC TGCCCATCGCGGCCGGCCGGCTTTCGATGCGCGGCGGCGTGGCAACAGTG CTAGCGTCGCTGCTGGGGGGCGTTGGGATCGGCCTCGTGGCGGCGCCGGC GGCATGCGGGTCGATGCCGCTGCTTGCGACGCTCGTGGCGTCGGCGGTCA TCGGGACGGCCTACTCGATGCCGCCCGTCCGCCTCAAGGTTGCGGAAACG ATTGCTGTTTTTTCCCGTCCATTTCCTCTGTTTTTGGATGTGCGATGCCA GGATCATGTTGGATGGGAGTTTCTCGGTTGGTTTCCACGGTTGCTTGCGA AAATCGCGAGTGGAGGCGAGCGGGAAGTGGGTCCTGTATCACCTCCGGCT TAACGTTCGGCACGCGCCACGTTTGGCGCGACGCTTGGCATCCAACGCGT CCGCTAACTTTCGTTTCCGAACCTGCGGAATCGTTTCGCCCCGTCCTTCT GTTTTGTGCAGCGCTTTCCCTCGCTGGCGGCCGTCTGCATCCTGACCGTC CGCGGCAGCGTCATCAACATCGGCTTCTACGCCCACGCCCGCGCCGCCGC CTTCGGCCTCCGCGACGCCGCCTCTGCCTCTGTCTCGGCCGCGGCCGCGA CCGGCGGCTTCGGCGGCATCGCAGCGGCGGCCGGCGGCGTGGCGGCGGCG GCGGGCCCCACCCTGGTGGCGCTGGCGGGGCTGCCGTCCCGCGACGTGAA GTGCGCCCTCCTGGCGCTGTACTTTGCGCTGTTCGGCGTGGTGATTGCGC TGATGAAGGACGTGCCGGACGTAGAAGGGGACCGCCTCTTCGGCATCCCG TCGTTTTCGGTCAAGGTTGGCCAGCAGACTGTTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig896:2437..4072+

>mRNA_P-wetherbeei_contig896.2.1 ID=mRNA_P-wetherbeei_contig896.2.1|Name=mRNA_P-wetherbeei_contig896.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=858bp|location=Sequence derived from alignment at P-wetherbeei_contig896:2437..4072+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCTTCGCGAACGGTCGCTTTTCGGTTAGCGGATCTGGCATCTCAAG
AGTCCCTTCACCGACTTTGCCGGCCTGGCGGCGAACAACTTATGGGGCGC
CGCCCCTCAAGGTGTCGCTGAGTGAGCCTTCCGTCAGCACCAACACCCGC
AACGGCACGGTCGGGGCGGTGCTCCCATCGTATCTTGCGGAGAAACAGGA
GAGCGAAGATGGCGCGACGCCGCCGCCTCTGCCGTATCAGTCTTTTTGGC
GAACGCTGTGGCAGTTTTCGCGGCCGCACACGCTGATTGGGAGCGCCTTG
TGCATCCCCACCATTGCCGCCTTTGCGGCGCCGCCCGGCTCCTCGGTCTT
CACCGCCGCCTTCCTGAGGGCCGTGGCGGTGGCTTTGGTGCCGGCGCTGC
TCATTAACCTTTTTGTCACGGGTCTTAACCAGGTGACGGATGTGGAAATC
GATCGGGTGAACAAGCCGGAGCTGCCCATCGCGGCCGGCCGGCTTTCGAT
GCGCGGCGGCGTGGCAACAGTGCTAGCGTCGCTGCTGGGGGGCGTTGGGA
TCGGCCTCGTGGCGGCGCCGGCGGCATGCGGGTCGATGCCGCTGCTTGCG
ACGCTCGTGGCGTCGGCGGTCATCGGGACGGCCTACTCGATGCCGCCCGT
CCGCCTCAAGCGCTTTCCCTCGCTGGCGGCCGTCTGCATCCTGACCGTCC
GCGGCAGCGTCATCAACATCGGCTTCTACGCCCACGCCCGCGCCGCCGCC
TTCGGCCTCCGCGACGCCGCCTCTGCCTCTGACGTGCCGGACGTAGAAGG
GGACCGCCTCTTCGGCATCCCGTCGTTTTCGGTCAAGGTTGGCCAGCAGA
CTGTTTTT
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