mRNA_P-wetherbeei_contig8891.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8891.3.1
Unique NamemRNA_P-wetherbeei_contig8891.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: D7G281_ECTSI (Protein-serine/threonine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G281_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.160e-22
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 RYLWTSSETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            +YLWTSSETY +VQ  H+   S+Q   DPLSGMGIGLPVSRLYARHFGGDLR+LSL G+G
Sbjct:  223 KYLWTSSETYDEVQAKHAANASFQPAIDPLSGMGIGLPVSRLYARHFGGDLRMLSLQGHG 282          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A835YM41_9STRA (Protein-serine/threonine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM41_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.260e-22
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 RYLWTSSETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            +YLWTSSE++ADV++ H  +HS+Q   DPL GMGIGLPVSRLYARH GGDLR+LS  GYG
Sbjct:  305 QYLWTSSESFADVEEKHRAIHSFQPVVDPLCGMGIGLPVSRLYARHLGGDLRMLSAEGYG 364          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A4D9CTR3_9STRA (Protein-serine/threonine kinase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTR3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.870e-13
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    4 YLWTSS-ETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            YL+TS+ ETY   Q+   +  SYQ   +P+ GMGIGLPVSRLYARH+GGD+RL+S+ G+G
Sbjct:  420 YLFTSAAETYEQQQQXMQQ--SYQPAMEPMQGMGIGLPVSRLYARHWGGDIRLISVQGWG 477          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A6B2L8R0_9EUKA (Protein-serine/threonine kinase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L8R0_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 9.390e-11
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   25 TYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            TYA   +A S  H +    DPL+G G GLP+SRLYAR+FGGDL+L+SL GYG
Sbjct:  262 TYAFTSEA-SPFHHHNISHDPLAGYGFGLPMSRLYARYFGGDLKLMSLDGYG 312          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A1X2I0C3_9FUNG (Protein-serine/threonine kinase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I0C3_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 2.720e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    7 LWTSSETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            +WT   T AD Q+   E +S      P++G G GLP+SRLYAR+FGGDL+L+S+ GYG
Sbjct:  367 VWTYMYTTADSQELEHE-YSQSEFRAPMAGFGYGLPLSRLYARYFGGDLKLISMEGYG 423          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A7S1YMB0_9STRA (Protein-serine/threonine kinase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YMB0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.050e-10
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    7 LWTSSETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            +W+   T AD  K  +  H+  +   PL+G+G GLP+SR YAR+FGGDL ++S+ GYG
Sbjct:  236 IWSYLFTTADPTKQEAFFHAANQAESPLAGLGYGLPISRSYARYFGGDLDIMSMEGYG 293          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A163MY69_ABSGL (Protein-serine/threonine kinase n=2 Tax=Absidia TaxID=4828 RepID=A0A163MY69_ABSGL)

HSP 1 Score: 62.8 bits (151), Expect = 5.050e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    7 LWTSSETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            +WT   T A VQ+   E +  +  + PL+G G GLP SRLYAR+FGGDL+L+S+ GYG
Sbjct:  345 VWTYLYTTAQVQELEPEFNKTEFKA-PLAGFGYGLPTSRLYARYFGGDLKLISMEGYG 401          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A8H7PKY8_9FUNG (Protein-serine/threonine kinase n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7PKY8_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 5.060e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    7 LWTSSETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            +WT   T A+VQ    E +     + P++G G GLP+SRLYAR+FGGDL+L+S+ GYG
Sbjct:  351 VWTYMYTTAEVQALEPEFNKSDFKA-PMAGFGYGLPISRLYARYFGGDLKLISMEGYG 407          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A067M2V6_9AGAM (Protein-serine/threonine kinase n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067M2V6_9AGAM)

HSP 1 Score: 62.8 bits (151), Expect = 5.080e-10
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    7 LWTSSETYADVQKAHSEVHSYQRDSD---PLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            +WT   T  + Q    + H    DSD   P++G G GLP+SRLYAR+FGGDLRL+S+ GYG
Sbjct:  362 IWTYMYTTMEAQGIDQDFH----DSDFKAPMAGFGYGLPLSRLYARYFGGDLRLISMEGYG 418          
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Match: A0A7R9U3H0_9STRA (Protein-serine/threonine kinase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3H0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.080e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 RYLWTSSETYAD--VQKAHSEVHSYQRDSD---PLSGMGIGLPVSRLYARHFGGDLRLLSLHGYG 180
            R +W+   T AD  VQK   E+   + D D   PL+G+G GLP+SR YAR+FGGD++++S+ GYG
Sbjct:  357 RRIWSYLFTTADPAVQKGFVEIGGAEGDHDTHSPLAGLGYGLPISRSYARYFGGDMQIMSMEGYG 421          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8891.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G281_ECTSI4.160e-2273.33Protein-serine/threonine kinase n=1 Tax=Ectocarpus... [more]
A0A835YM41_9STRA7.260e-2270.00Protein-serine/threonine kinase n=1 Tax=Tribonema ... [more]
A0A4D9CTR3_9STRA9.870e-1358.33Protein-serine/threonine kinase n=3 Tax=Monodopsid... [more]
A0A6B2L8R0_9EUKA9.390e-1159.62Protein-serine/threonine kinase n=1 Tax=Arcella in... [more]
A0A1X2I0C3_9FUNG2.720e-1051.72Protein-serine/threonine kinase n=1 Tax=Absidia re... [more]
A0A7S1YMB0_9STRA3.050e-1046.55Protein-serine/threonine kinase n=1 Tax=Grammatoph... [more]
A0A163MY69_ABSGL5.050e-1051.72Protein-serine/threonine kinase n=2 Tax=Absidia Ta... [more]
A0A8H7PKY8_9FUNG5.060e-1050.00Protein-serine/threonine kinase n=2 Tax=Umbelopsis... [more]
A0A067M2V6_9AGAM5.080e-1050.82Protein-serine/threonine kinase n=1 Tax=Botryobasi... [more]
A0A7R9U3H0_9STRA5.080e-1047.69Protein-serine/threonine kinase n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8891contigP-wetherbeei_contig8891:2419..2598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G281
PFAMsBCDHK_Adom3,HATPase_c
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K00898
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.83e-23
EggNOG OGsCOG0642@1|root,KOG0787@2759|Eukaryota
Ec32 ortholog descriptionpyruvate dehydrogenase kinase isoform 2; PDK2
Ec32 orthologEc-16_002130.1
EC2.7.11.2
Descriptionpyruvate dehydrogenase (acetyl-transferring) kinase activity
Cds size180
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187064.8945658-CDS-P-wetherbeei_contig8891:2418..25981683187064.8945658-CDS-P-wetherbeei_contig8891:2418..2598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8891 2419..2598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8891.3.1prot_P-wetherbeei_contig8891.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8891 2419..2598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8891.3.1

>prot_P-wetherbeei_contig8891.3.1 ID=prot_P-wetherbeei_contig8891.3.1|Name=mRNA_P-wetherbeei_contig8891.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
RYLWTSSETYADVQKAHSEVHSYQRDSDPLSGMGIGLPVSRLYARHFGGD
LRLLSLHGYG
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mRNA from alignment at P-wetherbeei_contig8891:2419..2598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8891.3.1 ID=mRNA_P-wetherbeei_contig8891.3.1|Name=mRNA_P-wetherbeei_contig8891.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig8891:2419..2598- (Phaeothamnion wetherbeei SAG_119_79)
AGGTACCTGTGGACGAGCTCGGAGACATACGCCGACGTGCAAAAGGCCCA CAGCGAGGTCCATTCTTATCAGAGAGATTCCGACCCGCTCTCAGGCATGG GCATTGGTTTGCCCGTGTCGCGGCTCTACGCCCGCCACTTCGGCGGTGAT CTGCGGCTGCTGTCGCTGCACGGCTACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8891:2419..2598-

>mRNA_P-wetherbeei_contig8891.3.1 ID=mRNA_P-wetherbeei_contig8891.3.1|Name=mRNA_P-wetherbeei_contig8891.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig8891:2419..2598- (Phaeothamnion wetherbeei SAG_119_79)
AGGTACCTGTGGACGAGCTCGGAGACATACGCCGACGTGCAAAAGGCCCA
CAGCGAGGTCCATTCTTATCAGAGAGATTCCGACCCGCTCTCAGGCATGG
GCATTGGTTTGCCCGTGTCGCGGCTCTACGCCCGCCACTTCGGCGGTGAT
CTGCGGCTGCTGTCGCTGCACGGCTACGGC
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