mRNA_P-wetherbeei_contig8886.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8886.1.1
Unique NamemRNA_P-wetherbeei_contig8886.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8886.1.1 vs. uniprot
Match: A0A812SJA0_9DINO (Calmodulin n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SJA0_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 7.470e-5
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 2 
Query:  623 QVSLDGLATTAPQLQASPGEVADYLRDEEALMRGMFQRYDRDRSGSIDRGELRLLCEDLG--MIPALIDSTTRDLPEDLG----FRQLLAWWQRNR--SIFSVTGDIIMAA 931
            + S  GL+     L A P E       +EA ++ +F ++DRD SG ID  ELR + E+LG  M PA +++   +L ++ G    F +  AWW +N   S F   G  +M A
Sbjct:  535 KFSNHGLSALGLSLPAWPQEA------DEAQLKEVFNKFDRDGSGDIDLNELRTVAEELGVSMTPAEVEAAMMELSQNKGSRCDFPRFSAWWLQNHGSSSFGALGRSLMKA 639
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8886.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812SJA0_9DINO7.470e-534.23Calmodulin n=1 Tax=Symbiodinium natans TaxID=87847... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8886contigP-wetherbeei_contig8886:94..1057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog192875.XP_004347994.1
PFAMsEF-hand_1,EF-hand_5,EF-hand_7
Model size966
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000767
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,3A74Z@33154|Opisthokonta
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-13_003940.1
DescriptionEF-hand domain pair
Cds size939
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187064.4921827-CDS-P-wetherbeei_contig8886:93..10321683187064.4921827-CDS-P-wetherbeei_contig8886:93..1032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8886 94..1032 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187064.5044239-UTR-P-wetherbeei_contig8886:1032..10571683187064.5044239-UTR-P-wetherbeei_contig8886:1032..1057Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8886 1033..1057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8886.1.1prot_P-wetherbeei_contig8886.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8886 94..1032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8886.1.1

>prot_P-wetherbeei_contig8886.1.1 ID=prot_P-wetherbeei_contig8886.1.1|Name=mRNA_P-wetherbeei_contig8886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=313bp
MFHLILLVQESVRRGDLAAWNMLELLATVAVPNGRPDPPTQRFVCALVMG
ERVGGGDDDGTDASASATAGDGGSGATGSADCQPLLFKVRAMPVDPAEEA
GAAGAGGGGAAGRNRGWSVWSTAAGRMRGASEAPGSEPQSGGGGNSGGGG
GGLPAFARASVFHGSRRHFNSKVPGSVNRGGGGGGGKGDGEAGGPQARWQ
VSLDGLATTAPQLQASPGEVADYLRDEEALMRGMFQRYDRDRSGSIDRGE
LRLLCEDLGMIPALIDSTTRDLPEDLGFRQLLAWWQRNRSIFSVTGDIIM
AAHAASMAALGTA
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mRNA from alignment at P-wetherbeei_contig8886:94..1057-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8886.1.1 ID=mRNA_P-wetherbeei_contig8886.1.1|Name=mRNA_P-wetherbeei_contig8886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=964bp|location=Sequence derived from alignment at P-wetherbeei_contig8886:94..1057- (Phaeothamnion wetherbeei SAG_119_79)
GCACGGAATCCTTTCGCGTGGCGAGATGTTCCATTTGATCCTGCTGGTGC
AGGAGAGCGTGCGGCGGGGCGACCTGGCGGCGTGGAACATGCTTGAGCTC
TTGGCGACCGTGGCAGTGCCGAACGGCCGCCCGGATCCGCCCACGCAGCG
CTTCGTCTGCGCGCTCGTCATGGGGGAGCGCGTCGGCGGCGGCGACGATG
ACGGCACCGATGCCAGTGCTTCCGCCACCGCCGGCGACGGCGGCAGTGGC
GCCACCGGATCTGCGGACTGCCAGCCGCTGCTCTTCAAGGTCCGGGCGAT
GCCGGTTGACCCGGCGGAGGAGGCCGGTGCTGCTGGTGCCGGAGGCGGCG
GCGCGGCCGGCCGCAACCGCGGCTGGAGCGTTTGGAGCACGGCAGCGGGC
CGAATGCGCGGCGCCTCGGAGGCGCCGGGCAGCGAGCCGCAATCTGGGGG
CGGCGGCAATAGCGGCGGCGGCGGCGGTGGCCTGCCGGCGTTCGCACGGG
CGTCGGTCTTTCACGGCAGCCGCCGCCACTTCAACTCAAAGGTCCCCGGC
AGCGTTAACCGTGGCGGCGGCGGCGGCGGCGGCAAAGGTGACGGGGAGGC
AGGTGGGCCGCAGGCCCGGTGGCAGGTATCACTGGACGGTCTGGCGACGA
CGGCACCGCAGCTGCAGGCATCGCCGGGCGAAGTCGCCGACTACCTGCGG
GACGAGGAGGCGCTGATGCGGGGCATGTTCCAGCGTTACGACCGCGACAG
AAGCGGCTCCATCGACCGCGGGGAGCTGCGGCTGCTATGCGAAGACCTGG
GCATGATTCCGGCCCTGATCGACAGCACGACGCGGGACCTGCCAGAAGAT
TTAGGCTTCCGGCAGCTGCTCGCGTGGTGGCAGCGCAACCGCAGCATCTT
CAGCGTGACGGGCGACATCATCATGGCGGCGCATGCCGCCAGCATGGCGG
CACTGGGAACCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8886:94..1057-

>mRNA_P-wetherbeei_contig8886.1.1 ID=mRNA_P-wetherbeei_contig8886.1.1|Name=mRNA_P-wetherbeei_contig8886.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig8886:94..1057- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCATTTGATCCTGCTGGTGCAGGAGAGCGTGCGGCGGGGCGACCT
GGCGGCGTGGAACATGCTTGAGCTCTTGGCGACCGTGGCAGTGCCGAACG
GCCGCCCGGATCCGCCCACGCAGCGCTTCGTCTGCGCGCTCGTCATGGGG
GAGCGCGTCGGCGGCGGCGACGATGACGGCACCGATGCCAGTGCTTCCGC
CACCGCCGGCGACGGCGGCAGTGGCGCCACCGGATCTGCGGACTGCCAGC
CGCTGCTCTTCAAGGTCCGGGCGATGCCGGTTGACCCGGCGGAGGAGGCC
GGTGCTGCTGGTGCCGGAGGCGGCGGCGCGGCCGGCCGCAACCGCGGCTG
GAGCGTTTGGAGCACGGCAGCGGGCCGAATGCGCGGCGCCTCGGAGGCGC
CGGGCAGCGAGCCGCAATCTGGGGGCGGCGGCAATAGCGGCGGCGGCGGC
GGTGGCCTGCCGGCGTTCGCACGGGCGTCGGTCTTTCACGGCAGCCGCCG
CCACTTCAACTCAAAGGTCCCCGGCAGCGTTAACCGTGGCGGCGGCGGCG
GCGGCGGCAAAGGTGACGGGGAGGCAGGTGGGCCGCAGGCCCGGTGGCAG
GTATCACTGGACGGTCTGGCGACGACGGCACCGCAGCTGCAGGCATCGCC
GGGCGAAGTCGCCGACTACCTGCGGGACGAGGAGGCGCTGATGCGGGGCA
TGTTCCAGCGTTACGACCGCGACAGAAGCGGCTCCATCGACCGCGGGGAG
CTGCGGCTGCTATGCGAAGACCTGGGCATGATTCCGGCCCTGATCGACAG
CACGACGCGGGACCTGCCAGAAGATTTAGGCTTCCGGCAGCTGCTCGCGT
GGTGGCAGCGCAACCGCAGCATCTTCAGCGTGACGGGCGACATCATCATG
GCGGCGCATGCCGCCAGCATGGCGGCACTGGGAACCGCC
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