mRNA_P-wetherbeei_contig8838.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8838.1.1
Unique NamemRNA_P-wetherbeei_contig8838.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8838.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8838contigP-wetherbeei_contig8838:963..2602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size946
Hectar predicted targeting categoryother localisation
Exons4
Cds size885
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187062.2849138-CDS-P-wetherbeei_contig8838:962..14901683187062.2849138-CDS-P-wetherbeei_contig8838:962..1490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8838 963..1490 -
1683187062.2948375-CDS-P-wetherbeei_contig8838:1806..19561683187062.2948375-CDS-P-wetherbeei_contig8838:1806..1956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8838 1807..1956 -
1683187062.3041162-CDS-P-wetherbeei_contig8838:2198..23391683187062.3041162-CDS-P-wetherbeei_contig8838:2198..2339Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8838 2199..2339 -
1683187062.3133967-CDS-P-wetherbeei_contig8838:2476..25421683187062.3133967-CDS-P-wetherbeei_contig8838:2476..2542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8838 2477..2542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187062.322515-UTR-P-wetherbeei_contig8838:2542..26021683187062.322515-UTR-P-wetherbeei_contig8838:2542..2602Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8838 2543..2602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8838.1.1prot_P-wetherbeei_contig8838.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8838 963..2542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8838.1.1

>prot_P-wetherbeei_contig8838.1.1 ID=prot_P-wetherbeei_contig8838.1.1|Name=mRNA_P-wetherbeei_contig8838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=295bp
MLGRHTVAAINHASSALATRIQVAAVLEDLLDDLEVWEWANRVANLEAEL
CRAKRELAAVKASESALLLASAASAAKASLDSERAKELRDSFVRELWHLT
KNFRTWEVERSELEAVQEQAERVPQLERDLQAAQRQLTRAQSKSPADSGV
AAAADSAPAMLGTAPALPRDRMASGVVGAGGRPASHPALGDAADAAAAGV
AVAAAAAALGGEAIHGRRPTASQRSPSRDSRGKASAVGAPKPHSPRMTAE
LVAPAPIRLAGAAAPSAVVEGAAASAAALAAASRPGAPAAVGVPV
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mRNA from alignment at P-wetherbeei_contig8838:963..2602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8838.1.1 ID=mRNA_P-wetherbeei_contig8838.1.1|Name=mRNA_P-wetherbeei_contig8838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1640bp|location=Sequence derived from alignment at P-wetherbeei_contig8838:963..2602- (Phaeothamnion wetherbeei SAG_119_79)
CAGAACCGATAGAACAGCTATGGACGCACACTTGTAAACGGAGAGGATCC
TCTATTTACCATGCTGGGACGGCATACAGTCGCAGCGATCAACCATGCTT
CCTCCGCGCTGGCGACGCGAATACAGGCACGCGAAATCTCTCATTTTCTG
CTCACAGATGCTCCGCGGCACTTCTCTGTCCTGCCACGGAGCGTTGGAAG
CTTTGCCGGCGGCGGGAACCCTAAGCTTTCCCGTCTTTCTTGCCTGTATT
GTCGTTCCCGTAGGTTGCAGCGGTCCTCGAGGACCTCTTGGACGACTTGG
AAGTATGGGAATGGGCTAACCGTGTGGCAAACCTGGAGGCGGAGCTCTGC
CGGGCGAAGCGGGAGCTAGCCGCGGTAAAGGCGTCCGAGTCAGCCCTTTT
GCTGGTGAGATTTTTGGGAACAATGAGGTACTTTTATGCCTCGCTTGAGA
CGATTGCTGCAATTAACTGACAGAGCTTAATCGTCTTCGCGGATTAATCC
GTTTTCCTGCGACATGAAACCTCCTACAATTCTTCTGCATCTTCTGGTTG
GGACCTTTCGTTCGACACTCCCGTGTTCCCTTCTCGTCTCAGTACCCATT
TCTCAGCCCTGTGACAAATGCTTCACCAACAATTATTCCCTTACAGGCCT
CGGCGGCCTCGGCGGCCAAGGCGTCCCTGGACAGCGAGCGCGCGAAGGAG
CTGCGGGACAGCTTTGTGCGTGAGCTGTGGCACCTCACCAAGAACTTTCG
GACGTGGGAGGTGGAGCGGAGCGAGCTGGAGGCGGTCCAGGAGCAGGTAA
TTTTGCCCTTCCTGGCTGTTGGTCTCTGAAAGGCCGGCAAAGAAGTTTGT
GTAAATAATTTGCTGTAGAACAACATTTCGGCTGACACGAGACGGTTGTT
TAGTTTCAAAACCCTGCTACTGGGCAGCATTCGCCGGGAGCACCTGCTCT
TATGGCCCCGGTTTATGCACTCGCTCGTAGGTAGGAAAACGCTGGAGAAG
GAGCTTTCGGAAAGATGGACCGGCGAGAGTTTTCCTCGTCGCTCTTCCTC
TTGGGCTTGTAATCGTCGTCGGCTCAATTTTTATTTGCCCTTTCCTCACT
TCGCGGCACCAGGCGGAGCGGGTGCCACAGCTGGAGAGGGATCTGCAGGC
GGCGCAGCGCCAGCTGACCCGCGCACAATCCAAATCGCCCGCTGACAGTG
GAGTGGCGGCAGCGGCCGACTCTGCACCGGCCATGCTCGGCACGGCGCCA
GCTTTGCCGCGGGACCGGATGGCCTCCGGCGTCGTTGGGGCGGGAGGCAG
ACCTGCTTCACATCCAGCGCTCGGCGATGCAGCAGATGCGGCAGCGGCGG
GGGTTGCGGTAGCAGCGGCTGCGGCGGCTTTGGGCGGAGAAGCCATACAC
GGAAGGCGGCCAACGGCGTCGCAGCGGTCGCCGTCTCGCGACTCTCGGGG
AAAGGCGTCGGCAGTTGGCGCCCCCAAGCCCCATTCGCCAAGGATGACAG
CGGAGCTGGTGGCGCCGGCGCCGATACGCCTCGCGGGCGCTGCGGCGCCG
TCGGCCGTGGTGGAAGGGGCGGCGGCCAGCGCGGCGGCACTGGCGGCTGC
ATCGCGGCCAGGAGCGCCGGCGGCAGTAGGGGTGCCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8838:963..2602-

>mRNA_P-wetherbeei_contig8838.1.1 ID=mRNA_P-wetherbeei_contig8838.1.1|Name=mRNA_P-wetherbeei_contig8838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=885bp|location=Sequence derived from alignment at P-wetherbeei_contig8838:963..2602- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGGACGGCATACAGTCGCAGCGATCAACCATGCTTCCTCCGCGCT
GGCGACGCGAATACAGGTTGCAGCGGTCCTCGAGGACCTCTTGGACGACT
TGGAAGTATGGGAATGGGCTAACCGTGTGGCAAACCTGGAGGCGGAGCTC
TGCCGGGCGAAGCGGGAGCTAGCCGCGGTAAAGGCGTCCGAGTCAGCCCT
TTTGCTGGCCTCGGCGGCCTCGGCGGCCAAGGCGTCCCTGGACAGCGAGC
GCGCGAAGGAGCTGCGGGACAGCTTTGTGCGTGAGCTGTGGCACCTCACC
AAGAACTTTCGGACGTGGGAGGTGGAGCGGAGCGAGCTGGAGGCGGTCCA
GGAGCAGGCGGAGCGGGTGCCACAGCTGGAGAGGGATCTGCAGGCGGCGC
AGCGCCAGCTGACCCGCGCACAATCCAAATCGCCCGCTGACAGTGGAGTG
GCGGCAGCGGCCGACTCTGCACCGGCCATGCTCGGCACGGCGCCAGCTTT
GCCGCGGGACCGGATGGCCTCCGGCGTCGTTGGGGCGGGAGGCAGACCTG
CTTCACATCCAGCGCTCGGCGATGCAGCAGATGCGGCAGCGGCGGGGGTT
GCGGTAGCAGCGGCTGCGGCGGCTTTGGGCGGAGAAGCCATACACGGAAG
GCGGCCAACGGCGTCGCAGCGGTCGCCGTCTCGCGACTCTCGGGGAAAGG
CGTCGGCAGTTGGCGCCCCCAAGCCCCATTCGCCAAGGATGACAGCGGAG
CTGGTGGCGCCGGCGCCGATACGCCTCGCGGGCGCTGCGGCGCCGTCGGC
CGTGGTGGAAGGGGCGGCGGCCAGCGCGGCGGCACTGGCGGCTGCATCGC
GGCCAGGAGCGCCGGCGGCAGTAGGGGTGCCGGTG
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