mRNA_P-wetherbeei_contig8822.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8822.2.1
Unique NamemRNA_P-wetherbeei_contig8822.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Match: D8LND4_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND4_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 5.240e-59
Identity = 104/183 (56.83%), Postives = 131/183 (71.58%), Query Frame = 1
Query:    1 GREPAVPTAVIEAKIVEAARDAARWLAVDDSQWHQAKKFIDDCLIK-PNPAVLRRRGITEEQWLEGKLERIRQAVAADEGLATCRHINRAVLPMDGWTPLHAAAAVGNVAVAEALLESSAAVSAWVVDLQGRTPLALAAERGHADVCAFLRHRMEREASISIVGSGAPVDLAGRTPLGWSVRS 546
            G  P +P  + +  IVEAA +AARWLA+DD  WHQ KKF+D+C+   PN   L RR +T +QW E K++ I+ ++AAD  LAT RH+N++  PMDGWTPLHAAAA GNV   + LLE    VSAW VDLQGRT LALAA  GH D+C  L+ RME E++ +IVG  APVDL+GRTPL WSV++
Sbjct:  173 GTPPRLPRPLADGMIVEAATEAARWLAIDDRTWHQGKKFMDECIADCPNEKNLIRRKLTPDQWRESKIKSIKASIAADPSLATSRHVNKSAFPMDGWTPLHAAAAKGNVEFVKVLLEVPG-VSAWAVDLQGRTALALAAAEGHLDLCLLLKARMEMESADTIVGVNAPVDLSGRTPLAWSVKA 354          
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Match: A0A6H5KI44_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI44_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.130e-58
Identity = 105/180 (58.33%), Postives = 129/180 (71.67%), Query Frame = 1
Query:   10 PAVPTAVIEAKIVEAARDAARWLAVDDSQWHQAKKFIDDCLIK-PNPAVLRRRGITEEQWLEGKLERIRQAVAADEGLATCRHINRAVLPMDGWTPLHAAAAVGNVAVAEALLESSAAVSAWVVDLQGRTPLALAAERGHADVCAFLRHRMEREASISIVGSGAPVDLAGRTPLGWSVRS 546
            P +P    +  IVEAA +AARWLAVDD  WHQ KKF+D+C+   PN   L RR +T EQW E K++ I+ ++AAD  LAT RH+N++  PMDGWTPLHAAAA GNV   + LLE    VSAW VDLQGRT LALAA  GH D+C  L+ RME E++ +IVG  APVDL+GRTPL WSV++
Sbjct:  396 PRLPRPQADGMIVEAATEAARWLAVDDHTWHQGKKFMDECIADCPNEKNLNRRKLTPEQWRESKIKSIKASIAADPSLATSRHVNKSAFPMDGWTPLHAAAAKGNVEFVKVLLEVPG-VSAWAVDLQGRTALALAAAEGHLDLCLLLKARMEMESADTIVGINAPVDLSGRTPLAWSVKA 574          
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Match: A0A835YR40_9STRA (Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR40_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.560e-27
Identity = 72/158 (45.57%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  130 LIKPNPAVL--RRRGITEEQWLEGKLERIRQAVAADEGLATCRHINRAVLPMDGWTPLHAAAAVGNVAVAEALLE----SSAAVSAWVVDLQGRTPLALAA-----------ERGHADVCAFLRHRMEREASIS--IVGSGAPVDLAGRTPLGWSVRS 546
            +I    A+L  +R+GITEE+W   KLE+I + +  +   A+CR I +A  P DGWTPLHAAAA GN++V +ALL+    +   +SAW +DLQGRT LA+A             +GHADV   L  RME E  +   I G+ APVD+AG TPL W  +S
Sbjct:  591 VISARQALLNDKRKGITEEEWRSKKLEKILEGLRKNPEFASCRAITKAE-PQDGWTPLHAAAAKGNLSVVQALLDWVGPAGEKISAWELDLQGRTALAVATYKLDDKKAGGGHQGHADVIEHLTLRMEAEDIVGGRITGANAPVDMAGLTPLAWLAKS 747          
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Match: A0A7S3GXM2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXM2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.760e-20
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  208 IRQAVAADEGLATCRHINRAVLPMDGWTPLHAAAAVGNVAVAEALLESSAAVSAWVVDLQGRTPLALAAERGHADVCAFLRHRMEREASISIVGSGAPVDLAGRTPLGWS 537
            +R+ +  D  LA  R      L +DG T LH AA+ GNV   + ++E    VS WV DLQGRTPL +AA++G  D C +LR  M+ E     VG  AP DLAG TPLGW+
Sbjct:  108 MRKLLTFDPSLAMSRTTEMNNLAVDGQTILHVAASFGNVEALKIMVEKGKDVSLWVRDLQGRTPLHVAAQKGQQDCCVYLREAMKLEKQRDPVGEDAPTDLAGTTPLGWA 217          
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Match: A0A7S2RZ40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ40_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.580e-14
Identity = 52/116 (44.83%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  205 RIRQAVAADEGLATCRHINRAV-LPMDGWTPLHAAAAVGNVAVAEALLESSAAVSA-WVVDLQGRTPLALAAERGHADVCAFLRHRMEREASISIVGSGAPVDLAGRTPLGWSVRS 546
            ++R  +AAD  L T R   R      DG+T LH AA  G+ A  E +LE   A  A W VDLQGRTPL +AAE G    C  L+  M +    S VG+ APVDL+G TP  W+ R+
Sbjct:  112 KLRARLAADPSLITTRVSTRLDGRHRDGFTLLHTAAECGHTAAIETILEFDEAPRAIWSVDLQGRTPLHIAAEAGKLRACRLLKEAMIQNGQ-SPVGASAPVDLSGLTPAAWNARA 226          
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Match: A0A7S0CFM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFM1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.220e-7
Identity = 42/108 (38.89%), Postives = 52/108 (48.15%), Query Frame = 1
Query:  280 DGWTPLHAAAAVGNVAVAEALLESSAAVSAWVVD----------------LQGRTPLALAAERGHADVCAFLRHRMEREASISIV---GSGAPVDLAGRTPLGWSVRS 546
            DG+ PLH+ A  GN+     LLE     S    +                LQGRT L +AAERG+ ++  FLR        I +V   G  APVDL GRTPLGW+  S
Sbjct:   18 DGFAPLHSCANAGNLDGIRILLELGGLQSRTGDNEADEEAPPRLSTNDRCLQGRTALHIAAERGYLEIVTFLR-------DIEVVCPIGEDAPVDLIGRTPLGWAAAS 118          
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Match: A0A3Q0SZC3_AMPCI (Uncharacterized protein n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0SZC3_AMPCI)

HSP 1 Score: 51.2 bits (121), Expect = 3.580e-5
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1
Query:  283 GWTPLHAAAAVGNVAVAEALLESSAAVSAWVVDLQGRTPLALAAERGHADVCAFLRHR 456
            GWTPLHAAA  G+ A+   L E  +      +D++GRTPL LAA+ GH      L  R
Sbjct:   22 GWTPLHAAACEGHRAICAVLTEQGSMARVGEMDIEGRTPLILAAQEGHWSTVKLLLDR 79          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8822.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LND4_ECTSI5.240e-5956.83PPM-type phosphatase domain-containing protein n=1... [more]
A0A6H5KI44_9PHAE1.130e-5858.33PPM-type phosphatase domain-containing protein n=1... [more]
A0A835YR40_9STRA3.560e-2745.57Phospholipase A(2) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S3GXM2_9STRA1.760e-2046.36Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RZ40_9STRA5.580e-1444.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0CFM1_9STRA1.220e-738.89Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A3Q0SZC3_AMPCI3.580e-544.83Uncharacterized protein n=1 Tax=Amphilophus citrin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8822contigP-wetherbeei_contig8822:1461..2688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LND4
Preferred namePP2C
PFAMsPP2C
Model size546
Max annot lvl2759|Eukaryota
KEGG koko:K01090,ko:K04457,ko:K04461,ko:K17499,ko:K17506
KEGG Pathwayko04010,ko04013,map04010,map04013
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.59e-60
EggNOG OGsCOG0631@1|root,KOG0697@2759|Eukaryota
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-04_004260.1
EC3.1.3.16
Descriptionmanganese ion binding
Cds size546
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187061.641625-CDS-P-wetherbeei_contig8822:1460..16761683187061.641625-CDS-P-wetherbeei_contig8822:1460..1676Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8822 1461..1676 +
1683187061.651867-CDS-P-wetherbeei_contig8822:1921..20921683187061.651867-CDS-P-wetherbeei_contig8822:1921..2092Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8822 1922..2092 +
1683187061.660131-CDS-P-wetherbeei_contig8822:2529..26881683187061.660131-CDS-P-wetherbeei_contig8822:2529..2688Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8822 2530..2688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8822.2.1prot_P-wetherbeei_contig8822.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8822 1461..2688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8822.2.1

>prot_P-wetherbeei_contig8822.2.1 ID=prot_P-wetherbeei_contig8822.2.1|Name=mRNA_P-wetherbeei_contig8822.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
GREPAVPTAVIEAKIVEAARDAARWLAVDDSQWHQAKKFIDDCLIKPNPA
VLRRRGITEEQWLEGKLERIRQAVAADEGLATCRHINRAVLPMDGWTPLH
AAAAVGNVAVAEALLESSAAVSAWVVDLQGRTPLALAAERGHADVCAFLR
HRMEREASISIVGSGAPVDLAGRTPLGWSVRS
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mRNA from alignment at P-wetherbeei_contig8822:1461..2688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8822.2.1 ID=mRNA_P-wetherbeei_contig8822.2.1|Name=mRNA_P-wetherbeei_contig8822.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1228bp|location=Sequence derived from alignment at P-wetherbeei_contig8822:1461..2688+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCGCGAGCCGGCGGTGCCAACGGCGGTCATCGAGGCGAAGATTGTGGA GGCAGCGCGTGACGCGGCGCGTTGGCTGGCCGTGGACGACAGCCAGTGGC ACCAGGCCAAGAAGTTCATCGACGACTGCCTCATCAAGCCCAACCCGGCG GTGCTGCGGCGGCGCGGCATCACCGAAGAGCAGTGGCTCGAAGGGAAGCT TGAGAGAATACGACAGGTACATGGCTCAATATGGACAGGAGACACCTCTT TCCTTTTTCACCCATTTTACATTAACATATTTCCGGCCGGTGTTTAGATT GGCAACAAATTTACATGTTCTAGATATAATTTCTTGTTGCTGAAATGCCG CGTTGCATCTGCTGGCAGATTGTGACCGATGGATGGCTGGCCGCTCGTGT TGGCGCCAGTCTCGTTCGCTTCTTTATTGCCCGTTCACCCGCCCTTTCCA TCTGCCGGCAGGCGGTGGCGGCGGACGAGGGGCTGGCGACGTGCCGCCAC ATCAACCGGGCGGTGCTGCCGATGGATGGCTGGACGCCGCTGCACGCCGC TGCCGCCGTAGGCAACGTCGCAGTGGCGGAGGCGCTGCTCGAGTCGTCCG CGGCGGTCAGTGCCTGGGTCGTGGACTTGCAGGTGAGGCTTTTGTTTTGC TTTTGCATTCCTTTTAGAGTGCTTTCTGATTGGCTGCTGTGGTCAAGAAG ACATAACAGGAGAGAAATGTTGGGGCATCAGGTCTGCGACCTTTCTTTTC ACGCCCTGGAACAAGGAGTCTGAAGCGTTGATTGGTGTTAGACGCCCGCC GTTATTGTGACCCCCAGCAAGACATGCGTCCCTCGCTCAGAAAGTGAAAA GAGGCAGCAGGTTTGCAAAATCTTCTTAAATTGAAAGACAGCACCAGTAG TAATTGGAAGGATGCTTGCACGTCAAACGTGTTGCCGAAGAAGCGATGGT TTGCCTCCCGCCTTTTCTTCTTTTCTGATGCCACTCTCTATGCCCTCGCC CTCCCGACGTTCCCTTCCCTTCCCCCTCCTCTTCTCCTCTTTCCGCCGCG GGCGCGCCGCGCGGAACAGGGCCGCACCCCGCTGGCGCTGGCGGCTGAGC GCGGCCACGCCGACGTATGTGCCTTTTTGCGGCACCGCATGGAGAGGGAA GCCTCCATCTCCATCGTCGGCAGCGGCGCCCCCGTCGATCTGGCCGGGCG GACGCCGCTCGGCTGGAGCGTCCGCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8822:1461..2688+

>mRNA_P-wetherbeei_contig8822.2.1 ID=mRNA_P-wetherbeei_contig8822.2.1|Name=mRNA_P-wetherbeei_contig8822.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig8822:1461..2688+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCGCGAGCCGGCGGTGCCAACGGCGGTCATCGAGGCGAAGATTGTGGA
GGCAGCGCGTGACGCGGCGCGTTGGCTGGCCGTGGACGACAGCCAGTGGC
ACCAGGCCAAGAAGTTCATCGACGACTGCCTCATCAAGCCCAACCCGGCG
GTGCTGCGGCGGCGCGGCATCACCGAAGAGCAGTGGCTCGAAGGGAAGCT
TGAGAGAATACGACAGGCGGTGGCGGCGGACGAGGGGCTGGCGACGTGCC
GCCACATCAACCGGGCGGTGCTGCCGATGGATGGCTGGACGCCGCTGCAC
GCCGCTGCCGCCGTAGGCAACGTCGCAGTGGCGGAGGCGCTGCTCGAGTC
GTCCGCGGCGGTCAGTGCCTGGGTCGTGGACTTGCAGGGCCGCACCCCGC
TGGCGCTGGCGGCTGAGCGCGGCCACGCCGACGTATGTGCCTTTTTGCGG
CACCGCATGGAGAGGGAAGCCTCCATCTCCATCGTCGGCAGCGGCGCCCC
CGTCGATCTGGCCGGGCGGACGCCGCTCGGCTGGAGCGTCCGCTCC
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