mRNA_P-wetherbeei_contig881.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig881.1.1
Unique NamemRNA_P-wetherbeei_contig881.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig881.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig881contigP-wetherbeei_contig881:64..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size572
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.7860005-CDS-P-wetherbeei_contig881:63..6061683187060.7860005-CDS-P-wetherbeei_contig881:63..606Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig881 64..606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187060.8063743-UTR-P-wetherbeei_contig881:606..6351683187060.8063743-UTR-P-wetherbeei_contig881:606..635Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig881 607..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig881.1.1prot_P-wetherbeei_contig881.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig881 64..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig881.1.1

>prot_P-wetherbeei_contig881.1.1 ID=prot_P-wetherbeei_contig881.1.1|Name=mRNA_P-wetherbeei_contig881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
HPAVALDHQSVPSKERRIKRANHRRLTPPLPPRQVAPTAVTGVGKTGGVK
GGKRELRLSEEEAVGQGLRRQFSRGLSSRAVGQTCVIRRARAVADRCRRL
PAGRRKRLGEKLTRAGKENGEKDERGIACACRLPAAAVRQRRQRCRLQDR
ISGRDSEASKAGGAPAWFEGRDQAVAFPRR*
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mRNA from alignment at P-wetherbeei_contig881:64..635+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig881.1.1 ID=mRNA_P-wetherbeei_contig881.1.1|Name=mRNA_P-wetherbeei_contig881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=572bp|location=Sequence derived from alignment at P-wetherbeei_contig881:64..635+ (Phaeothamnion wetherbeei SAG_119_79)
CATCCGGCTGTAGCACTGGATCACCAAAGTGTCCCGTCTAAAGAACGGCG
CATAAAGCGGGCGAACCACAGACGATTGACGCCGCCGCTGCCGCCTCGGC
AAGTAGCGCCGACGGCAGTGACCGGCGTTGGGAAAACGGGAGGGGTAAAA
GGGGGGAAACGGGAACTAAGACTTAGCGAGGAAGAAGCGGTTGGGCAGGG
ATTAAGGCGGCAATTTTCCCGCGGCCTCAGCTCCCGCGCGGTGGGTCAAA
CCTGCGTCATTCGCCGGGCCCGCGCGGTAGCGGACCGTTGCCGTCGTTTA
CCAGCAGGAAGAAGAAAGAGGCTTGGAGAAAAACTTACTCGGGCTGGGAA
AGAGAATGGGGAAAAAGACGAGCGGGGTATTGCTTGCGCATGCCGCTTAC
CGGCGGCAGCCGTTCGGCAGCGGCGGCAGCGCTGCCGGCTACAAGACAGA
ATATCGGGGAGAGATAGCGAGGCTTCCAAGGCGGGCGGCGCGCCTGCGTG
GTTCGAGGGAAGGGATCAAGCGGTGGCATTCCCTCGGCGGTAGGAAAAAA
TAGAATCACTTGTCAGACGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig881:64..635+

>mRNA_P-wetherbeei_contig881.1.1 ID=mRNA_P-wetherbeei_contig881.1.1|Name=mRNA_P-wetherbeei_contig881.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig881:64..635+ (Phaeothamnion wetherbeei SAG_119_79)
CATCCGGCTGTAGCACTGGATCACCAAAGTGTCCCGTCTAAAGAACGGCG
CATAAAGCGGGCGAACCACAGACGATTGACGCCGCCGCTGCCGCCTCGGC
AAGTAGCGCCGACGGCAGTGACCGGCGTTGGGAAAACGGGAGGGGTAAAA
GGGGGGAAACGGGAACTAAGACTTAGCGAGGAAGAAGCGGTTGGGCAGGG
ATTAAGGCGGCAATTTTCCCGCGGCCTCAGCTCCCGCGCGGTGGGTCAAA
CCTGCGTCATTCGCCGGGCCCGCGCGGTAGCGGACCGTTGCCGTCGTTTA
CCAGCAGGAAGAAGAAAGAGGCTTGGAGAAAAACTTACTCGGGCTGGGAA
AGAGAATGGGGAAAAAGACGAGCGGGGTATTGCTTGCGCATGCCGCTTAC
CGGCGGCAGCCGTTCGGCAGCGGCGGCAGCGCTGCCGGCTACAAGACAGA
ATATCGGGGAGAGATAGCGAGGCTTCCAAGGCGGGCGGCGCGCCTGCGTG
GTTCGAGGGAAGGGATCAAGCGGTGGCATTCCCTCGGCGGTAG
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