mRNA_P-wetherbeei_contig877.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig877.6.1
Unique NamemRNA_P-wetherbeei_contig877.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig877.6.1 vs. uniprot
Match: A0A7S1XYV7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYV7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.040e-16
Identity = 66/205 (32.20%), Postives = 103/205 (50.24%), Query Frame = 1 
Query:   10 GAALARAVGESRTLAALTLRDNGLGAGTGAALAKAVTVQWRHGRVVRPCRLTALDLSDNPGIGDAAGQQLLAALANDVTERLDLSRTGLGPEAGVVLGKKLLKSPTAALREVRLLGNSLGREGANEILWAMRLNRRVSVLDLSANGIGPHRLRLEGNALDDAAAGSIAAKLAGDCQLEALQRNRALTELDLSDNRLGPSGGNALA 624
            G  L +A+ ++ ++  L L  N L    G  LA+++      G V+R C +  L L+DN  +G  AG+++LA + N +T ++ +    +G   G V+G+ L K    A +E+ L  N LG++G N+I WA+R N  +  LDLS N  GP      G + DD        +  G+    AL+ N  L  LDL +N L    G+  A
Sbjct:  477 GTRLFQALAQNSSITYLDLCGNALSDQAGQELAESMRTVIEKGMVLRKCHVRTL-LADNCSLGPEAGERILANMQNTITIKISMGHNNIGSAGGTVVGQALRKG-FVAWKELNLESNGLGKDGLNDIFWALRRNTILKSLDLSGNEAGP----TFGTSADDL-------EEYGNSLGSALKLNVTLNWLDLGNNGLSAECGSNFA 668
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BLAST of mRNA_P-wetherbeei_contig877.6.1 vs. uniprot
Match: A0A401RPX0_CHIPU (NACHT domain-containing protein (Fragment) n=2 Tax=Chiloscyllium TaxID=34767 RepID=A0A401RPX0_CHIPU)

HSP 1 Score: 55.5 bits (132), Expect = 5.610e-5
Identity = 46/133 (34.59%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:  253 LDLSRTGLGPEAGVVLGKKLLKSPTAALREVRLLGNSLGREGANEILWAMRLNRRVSVLDLSANGIGPHRLRLEGNALDDA---------AAGSIAAKLAGDCQLEALQRNRALTELDLSDNRLGPSGGNALA 624
            L LS   LG ++GV L   +L+ P   ++E+ L  NSL    A ++ +A+ +NR ++VL+LS N +G   ++L   AL +          A   ++A    D  +  L  NR+LT LDLS+N+LG SG + L+
Sbjct:  740 LRLSFNELG-DSGVKLLSVVLRKPDCKIQELGLEENSLTDVCAGDLSFALSMNRSLNVLNLSNNELGDSGMKLLCVALRNPDCTIQKLQLADNDLSASCVEDL-VSVLATNRSLTNLDLSNNKLGDSGVSLLS 870
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BLAST of mRNA_P-wetherbeei_contig877.6.1 vs. uniprot
Match: A0A8J2ACF2_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2ACF2_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 7.070e-5
Identity = 46/155 (29.68%), Postives = 74/155 (47.74%), Query Frame = 1 
Query:  193 IGDAAGQQLLAALANDVT-ERLDLSRTGLGPEAGVVLGKKLLKSPTAALREVRLLGNSLGREGANEILWAMRLNRRVSVLDLSANGIGPHRLRLEGNALDDAAAGSIAAKL---------------------AGDCQLEALQRNRALTELDLSDN 591
            +G    + L  A+ ++++ E +DLSR GL  E GV +GK L K+   AL ++ L GN LG + A+    A+++N  +  L+L AN +G            D  +G +A                        AG+   +AL +N+ LT+L+LS N
Sbjct:  145 LGSVRLRLLAQAMEDNLSCETIDLSRKGLNDEDGVTIGKMLAKNK--ALTKMDLEGNMLGPKAAHAFAEALKVNETIKCLNLEANSMG-----------GDDESGIVALXXXXXXXXXXXXXXXXXXXXXXSAGEAFHDALDKNKVLTQLELSYN 286
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig877.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S1XYV7_9STRA1.040e-1632.20Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A401RPX0_CHIPU5.610e-534.59NACHT domain-containing protein (Fragment) n=2 Tax... [more]
A0A8J2ACF2_9DINO7.070e-529.68Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig877contigP-wetherbeei_contig877:6875..8047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0L6
PFAMsLRR_6
Model size843
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.04e-25
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size843
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187059.1326313-CDS-P-wetherbeei_contig877:6874..71741683187059.1326313-CDS-P-wetherbeei_contig877:6874..7174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig877 6875..7174 -
1683187059.1420274-CDS-P-wetherbeei_contig877:7330..74151683187059.1420274-CDS-P-wetherbeei_contig877:7330..7415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig877 7331..7415 -
1683187059.1500087-CDS-P-wetherbeei_contig877:7589..80471683187059.1500087-CDS-P-wetherbeei_contig877:7589..8047Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig877 7590..8047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig877.6.1prot_P-wetherbeei_contig877.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig877 6875..8047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig877.6.1

>prot_P-wetherbeei_contig877.6.1 ID=prot_P-wetherbeei_contig877.6.1|Name=mRNA_P-wetherbeei_contig877.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
DAAGAALARAVGESRTLAALTLRDNGLGAGTGAALAKAVTVQWRHGRVVR
PCRLTALDLSDNPGIGDAAGQQLLAALANDVTERLDLSRTGLGPEAGVVL
GKKLLKSPTAALREVRLLGNSLGREGANEILWAMRLNRRVSVLDLSANGI
GPHRLRLEGNALDDAAAGSIAAKLAGDCQLEALQRNRALTELDLSDNRLG
PSGGNALAAALPRNGTLKRLGLENNRFDRGVGEAMVSALAVAAAGGNAGL
VELRLSVAEVGIDAHSEIAAALADRQRAAAL
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mRNA from alignment at P-wetherbeei_contig877:6875..8047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig877.6.1 ID=mRNA_P-wetherbeei_contig877.6.1|Name=mRNA_P-wetherbeei_contig877.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1173bp|location=Sequence derived from alignment at P-wetherbeei_contig877:6875..8047- (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGCCGGCGCGGCACTGGCGCGCGCCGTCGGCGAGAGCCGCACGCT
GGCGGCGCTGACGCTGCGGGACAACGGCTTGGGTGCCGGCACGGGCGCGG
CGCTTGCCAAGGCGGTGACGGTGCAGTGGCGGCACGGCCGGGTGGTGCGC
CCGTGCCGGCTGACAGCGCTGGACCTTTCGGACAACCCCGGCATCGGCGA
CGCGGCGGGGCAGCAGCTGCTGGCGGCGCTGGCCAACGACGTGACGGAAC
GGTTGGATCTGTCCCGGACCGGTCTCGGGCCTGAAGCAGGTGTCGTCCTC
GGCAAGAAGCTCCTCAAATCGCCGACCGCGGCCCTCCGCGAAGTGCGCCT
GCTGGGCAACTCGCTGGGGCGCGAGGGCGCCAACGAAATCTTGTGGGCGA
TGCGCCTCAACCGGCGCGTGTCCGTCCTGGACCTTTCGGCGAACGGCATC
GGGCCACAGTTCGGCACTGCTGCTGACTGCCTCCAGACCGAGGACGCCGG
CCTCGACACGTCACTGGCGTCGGCTCTGCGGCACAACCACACGCTGCGCG
TGTTGGGGCTCGCCGACAACGGCATGTCTGCCGAGTGCGGCGCCGCCATG
GCCGCCGGCCTTAGCGGCAACCCGGCCGTCAGCCGGCTGCGGCTGGAAGG
CAACGCGCTCGACGACGCGGCGGCGGGCAGCATCGCCGCCAAGCTGGCCG
GCGACTGCCAGCTGGAGGTGCTCTCGCTGGCGCGCAACCGCGTCGGCTGG
GCCGGCGGTGTCGACCTGGCGCGGGCGCTCTTCACCAACGACCGTCTCGA
GCGGCTTGATCTCTCACACAACAGCCTGGGCGACTGCGGGGTGCATTTAA
ACATGGGGGCCGAGTTCGCCGAGGCGCTGCAGCGGAACCGTGCTCTGACC
GAGCTGGACCTTTCGGACAACCGGCTTGGCCCGTCGGGCGGCAACGCGCT
GGCAGCGGCGCTGCCACGCAACGGCACGCTGAAGCGGCTCGGGCTCGAGA
ACAACCGGTTCGACCGCGGCGTCGGGGAGGCTATGGTCTCCGCGCTGGCG
GTCGCTGCCGCCGGCGGGAACGCGGGGCTTGTGGAGCTACGGCTGTCGGT
GGCGGAGGTCGGCATCGACGCGCACAGCGAGATTGCCGCGGCGCTCGCGG
ACCGCCAGCGGGCCGCGGCACTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig877:6875..8047-

>mRNA_P-wetherbeei_contig877.6.1 ID=mRNA_P-wetherbeei_contig877.6.1|Name=mRNA_P-wetherbeei_contig877.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig877:6875..8047- (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGCCGGCGCGGCACTGGCGCGCGCCGTCGGCGAGAGCCGCACGCT
GGCGGCGCTGACGCTGCGGGACAACGGCTTGGGTGCCGGCACGGGCGCGG
CGCTTGCCAAGGCGGTGACGGTGCAGTGGCGGCACGGCCGGGTGGTGCGC
CCGTGCCGGCTGACAGCGCTGGACCTTTCGGACAACCCCGGCATCGGCGA
CGCGGCGGGGCAGCAGCTGCTGGCGGCGCTGGCCAACGACGTGACGGAAC
GGTTGGATCTGTCCCGGACCGGTCTCGGGCCTGAAGCAGGTGTCGTCCTC
GGCAAGAAGCTCCTCAAATCGCCGACCGCGGCCCTCCGCGAAGTGCGCCT
GCTGGGCAACTCGCTGGGGCGCGAGGGCGCCAACGAAATCTTGTGGGCGA
TGCGCCTCAACCGGCGCGTGTCCGTCCTGGACCTTTCGGCGAACGGCATC
GGGCCACACCGGCTGCGGCTGGAAGGCAACGCGCTCGACGACGCGGCGGC
GGGCAGCATCGCCGCCAAGCTGGCCGGCGACTGCCAGCTGGAGGCGCTGC
AGCGGAACCGTGCTCTGACCGAGCTGGACCTTTCGGACAACCGGCTTGGC
CCGTCGGGCGGCAACGCGCTGGCAGCGGCGCTGCCACGCAACGGCACGCT
GAAGCGGCTCGGGCTCGAGAACAACCGGTTCGACCGCGGCGTCGGGGAGG
CTATGGTCTCCGCGCTGGCGGTCGCTGCCGCCGGCGGGAACGCGGGGCTT
GTGGAGCTACGGCTGTCGGTGGCGGAGGTCGGCATCGACGCGCACAGCGA
GATTGCCGCGGCGCTCGCGGACCGCCAGCGGGCCGCGGCACTT
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