mRNA_P-wetherbeei_contig8736.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8736.2.1
Unique NamemRNA_P-wetherbeei_contig8736.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: A0A7S2V1N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.770e-39
Identity = 69/141 (48.94%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   58 ENVRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNRDARA--GGADLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRLLMHLYR 474
            EN+R+F++KSL++ NLA SV++G+W T R   T +N +F  C +VI  FSVNES+     HFQGCA M +  +  A    G    W   F V WL +CELPFR V HL+NPLN ++PV+RSRD QEL  ++G ++L+ LYR
Sbjct:    2 ENIRFFIIKSLNYKNLAVSVKQGKWATHRSHKTSLNAAFHQCSKVIFFFSVNESK-----HFQGCALMMSTIDDKANVVEGNVRSWTGQFQVRWLHVCELPFRTVAHLQNPLNGNMPVIRSRDCQELTRELGVQMLVLLYR 137          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: I2CQS9_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQS9_NANGC)

HSP 1 Score: 130 bits (327), Expect = 5.810e-34
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 1
Query:   40 LPVKPGENVRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNRDARAGGA----------DLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRLLMHLY 471
            LP      VR+FV+KSL++ NLAQSVR G WRT R     +NE+F  CD+V++ +SVNES      H+QG A MT+P     +              D W A F + WLRL  LPF +   L+NPLN++LP+ RSRD QEL P+IGR+LL  +Y
Sbjct:  119 LPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESG-----HWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIY 267          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: W7TJY8_9STRA (Zinc finger, CCCH-type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJY8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.130e-32
Identity = 71/154 (46.10%), Postives = 93/154 (60.39%), Query Frame = 1
Query:   40 LPVKPGENVRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNRDARAGGA----------DLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRLLMHLY 471
            LP      VR+FV+KSL++ NLAQSVR G WRT R     +NE+F  CD+V++ +SVNES      H+QG A MT+P     +              D W A F + WLRL  LPF +   L+NPLN++LP+ RSRD QEL P+IGR+LL  +Y
Sbjct:  334 LPWPDQARVRFFVIKSLNYKNLAQSVRRGVWRTHRNNERTLNEAFRTCDKVVLFYSVNESG-----HWQGAAVMTSPIRSQQQPPHLPPLQMLQHHQDGWTAEFSLEWLRLVSLPFPHTRPLRNPLNDNLPISRSRDCQELTPEIGRQLLYLIY 482          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: UPI0009017F5E (30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1 n=4 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009017F5E)

HSP 1 Score: 125 bits (313), Expect = 2.280e-30
Identity = 67/161 (41.61%), Postives = 97/161 (60.25%), Query Frame = 1
Query:    7 NVEEDQEIADALPVKPGENVRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNRDARAG------GADLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRLLMHLY 471
            N  ++Q    A+P+  G + RYF++KS + +NL  S ++G W T+R    ++NE+F   + VI++FSVNE++     HFQGCA+MTT     A  G      G   +   F V WL+LCEL F+  GHL+NP +E+LPV  SRD QEL   +G++L   LY
Sbjct:  239 NAPQNQANRSAIPLPQGTS-RYFIVKSRNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVILIFSVNETK-----HFQGCAKMTTSIGGTANGGNWKYEHGTAHYGRNFSVKWLKLCELSFKKTGHLRNPYSENLPVKVSRDCQELEASVGQQLASLLY 393          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: A0A1Y1IM96_KLENI (YTH domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IM96_KLENI)

HSP 1 Score: 120 bits (302), Expect = 7.200e-29
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   52 PGENVRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNRDARA------GGADLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIG 447
            P   +RYF++KS+SH N+A S+ +G W T+ +   ++N++F   + VI+VFSVN+S      HFQG ARM +P  R          GG   W   F V WL+L +L F    HL+NPLNE  P+  SRDGQEL P+IG
Sbjct:  146 PKRGIRYFIIKSVSHRNIATSIEKGVWATQAINEAKLNQAFETAESVILVFSVNQSG-----HFQGYARMASPIGRSRSGQWSENEGGGGPWGGDFAVEWLQLYDLAFSKTLHLRNPLNEMKPIKISRDGQELPPEIG 278          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: A0A1Y1HWU1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWU1_KLENI)

HSP 1 Score: 119 bits (298), Expect = 2.630e-28
Identity = 65/151 (43.05%), Postives = 88/151 (58.28%), Query Frame = 1
Query:   37 ALPVKPGENVRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARM------TTPTNRDARAGGADLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRLLMHLY 471
            A P+ PG + RYF++KS + +NL  S R G W T R    R+N +F     VI+++S+NESR     HFQGCARM      T  T +   A G   +   F + WL+LCEL F    HL+NP NE+LPV  +RD QEL P +G +L+  +Y
Sbjct:  208 ANPMPPG-STRYFIIKSANRENLELSTRRGAWATHRNNEQRLNAAFDTVANVILIYSINESR-----HFQGCARMESKVGATNATGQWKYAHGTAQFGRNFRLRWLKLCELSFTKTRHLRNPYNENLPVKVARDCQELEPSVGEQLVALMY 352          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: A0A388KNH8_CHABU (YTH domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNH8_CHABU)

HSP 1 Score: 117 bits (294), Expect = 1.010e-27
Identity = 62/137 (45.26%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   64 VRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNR------DARAGGADLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRL 456
            VRYFV+KSL+H N+A SV +G W T+ +   ++NE++   ++V+++FSVN S      HFQG ARM +P  R           G   W   F V W+RL +LPF+   HLKNPLN   PV  SRD QEL  DIG  L
Sbjct:  198 VRYFVIKSLNHKNIASSVEKGIWATQAMNEDKLNEAYRSAERVLLIFSVNTSG-----HFQGYARMASPIGRRMSTLWSENGEGGSPWGGTFSVEWIRLFDLPFQKTLHLKNPLNHWKPVKISRDCQELTADIGEAL 329          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: A0A1U8EXX1_CAPAN (uncharacterized protein LOC107851494 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8EXX1_CAPAN)

HSP 1 Score: 112 bits (279), Expect = 2.300e-26
Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 1
Query:    1 RSNVEEDQ----EIADALPVKPGE--NVRYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTN--RDA----RAGGADLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRL 456
            RS  EED     +I  +  ++ G+  ++RYFV+KSL+H+N+  SV +G W T+ +    ++E+F   ++VI++FSVN S      +FQG A+MT+P    RD       GG   W   F V WLRL +LPF+   HLKNP N+  PV  SRD QEL PDIG  L
Sbjct:   43 RSRAEEDTVSCPQIGVSGAIEKGKPYDIRYFVIKSLNHENIQVSVDKGIWATQAMNEDILDEAFHNSNKVILIFSVNMSG-----YFQGYAQMTSPVGLRRDQVWSQGNGGRTTWGRSFDVNWLRLSDLPFQRTLHLKNPWNQYKPVKISRDCQELPPDIGEAL 201          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: UPI000D1C27FE (30-kDa cleavage and polyadenylation specificity factor 30 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C27FE)

HSP 1 Score: 110 bits (275), Expect = 1.090e-25
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   67 RYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNR-------DARAGGADLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRL 456
            RYF++KSL+H NL++SV  G W T  +    +NE+F   ++V++VFSVN S      HFQG A MT+   R       DA  G +  W  VF V WL+L +LPF+   HLKNPL+++ PV  S+D QEL  ++G  L
Sbjct:  108 RYFIIKSLNHQNLSKSVERGVWATPAVNEDILNEAFQTSERVVLVFSVNMSG-----HFQGYAEMTSRPGRRKDNLWNDANDGSSP-WGGVFSVDWLKLHDLPFQETSHLKNPLDDNKPVKISKDCQELPREVGESL 238          
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Match: A0A7S2PVL9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PVL9_9DINO)

HSP 1 Score: 107 bits (266), Expect = 1.180e-25
Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   67 RYFVMKSLSHDNLAQSVREGRWRTRRLAATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNRDARAGGADLWDA---VFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGRRL 456
            RYFV+ S + +N+ +SVR G W T+R    R++E+F     V+++FSVN S       FQG A M +P  R  R+G  D +     +F V WLRL +LP++ + H++NPLN D PV  SRDGQEL  D GRRL
Sbjct:    3 RYFVITSNTKENVVRSVRHGLWATQRKNEQRLDEAFRASPAVLLIFSVNHS-----DCFQGYALMRSPIGRP-RSGVRDPFHGFGRLFDVEWLRLHDLPYKEIEHIRNPLNGDRPVQSSRDGQELSNDAGRRL 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8736.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V1N4_9STRA2.770e-3948.94Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
I2CQS9_NANGC5.810e-3446.10Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7TJY8_9STRA4.130e-3246.10Zinc finger, CCCH-type n=2 Tax=Monodopsidaceae Tax... [more]
UPI0009017F5E2.280e-3041.6130-kDa cleavage and polyadenylation specificity fa... [more]
A0A1Y1IM96_KLENI7.200e-2944.20YTH domain-containing protein n=1 Tax=Klebsormidiu... [more]
A0A1Y1HWU1_KLENI2.630e-2843.05Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A388KNH8_CHABU1.010e-2745.26YTH domain-containing protein n=1 Tax=Chara brauni... [more]
A0A1U8EXX1_CAPAN2.300e-2642.68uncharacterized protein LOC107851494 n=1 Tax=Capsi... [more]
UPI000D1C27FE1.090e-2543.8030-kDa cleavage and polyadenylation specificity fa... [more]
A0A7S2PVL9_9DINO1.180e-2545.11Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8736contigP-wetherbeei_contig8736:1562..2360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3641.EOX96971
PFAMsYTH
Model size477
Max annot lvl35493|Streptophyta
KEGG koko:K14404
KEGG Pathwayko03015,ko05164,map03015,map05164
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010363,GO:0010467,GO:0010468,GO:0010646,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0023051,GO:0031123,GO:0031124,GO:0031323,GO:0031347,GO:0031349,GO:0031440,GO:0031974,GO:0031981,GO:0032991,GO:0034052,GO:0034641,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050684,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900363,GO:1901360,GO:1901363,GO:1903311,GO:2000031,GO:2001023,GO:2001038
Exons2
Evalue2.96e-30
EggNOG OGsCOG5084@1|root,KOG1902@1|root,KOG1040@2759|Eukaryota,KOG1902@2759|Eukaryota,37JPZ@33090|Viridiplantae,3GEJ2@35493|Streptophyta
DescriptionCleavage and polyadenylation specificity factor
Cds size477
COG categoryAT
BRITEko00000,ko00001,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187057.01582-CDS-P-wetherbeei_contig8736:1561..18021683187057.01582-CDS-P-wetherbeei_contig8736:1561..1802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8736 1562..1802 -
1683187057.0274494-CDS-P-wetherbeei_contig8736:2124..23601683187057.0274494-CDS-P-wetherbeei_contig8736:2124..2360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8736 2125..2360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8736.2.1prot_P-wetherbeei_contig8736.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8736 1562..2360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8736.2.1

>prot_P-wetherbeei_contig8736.2.1 ID=prot_P-wetherbeei_contig8736.2.1|Name=mRNA_P-wetherbeei_contig8736.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
RSNVEEDQEIADALPVKPGENVRYFVMKSLSHDNLAQSVREGRWRTRRLA
ATRMNESFAVCDQVIVVFSVNESRRVSQPHFQGCARMTTPTNRDARAGGA
DLWDAVFGVGWLRLCELPFRNVGHLKNPLNEDLPVLRSRDGQELVPDIGR
RLLMHLYR*
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mRNA from alignment at P-wetherbeei_contig8736:1562..2360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8736.2.1 ID=mRNA_P-wetherbeei_contig8736.2.1|Name=mRNA_P-wetherbeei_contig8736.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=799bp|location=Sequence derived from alignment at P-wetherbeei_contig8736:1562..2360- (Phaeothamnion wetherbeei SAG_119_79)
AGGTCGAATGTGGAGGAAGACCAGGAGATCGCCGACGCGCTGCCGGTCAA GCCGGGGGAGAACGTGCGCTACTTCGTCATGAAATCACTGTCGCACGACA ACCTCGCGCAGAGCGTGCGGGAGGGGCGGTGGCGGACGCGGCGGCTGGCG GCGACACGCATGAACGAGTCGTTTGCGGTGTGCGACCAGGTCATCGTCGT CTTCAGCGTCAACGAGAGCAGGCGAGTCAGTCAGCCGTTCCCTCTTCTTC TCTCTAAAAAAAGGATTCTTTCAGTGTTCGGATATCTTTCTCAGTCTTGA GCTCCTCATATTTGTGGTTTGCTCACTTTCTGCCATTACGCTGGTGGGAC CGTTGTTCATTCTCATAGCACTAAAGCCTGTGCCAGGATGATTTTCCGAC GAAGAGCCGTTTTTCCCTAATTAAACATTCCTGAGAATATGTTTCAGTAG TCCTTTATGGAGAGACACTGATGCGCTGGACTCACTTTAAACCCGCAATT CCGCTCTCCGATCCTCTCCACCTCTCCTCACCTCACTACTGCTCTCCTTC TACGACAGGCACTTCCAGGGCTGCGCCCGCATGACGACGCCCACCAACCG CGACGCTCGCGCCGGCGGCGCCGACCTATGGGACGCCGTCTTCGGCGTCG GGTGGCTGCGGCTGTGCGAGCTGCCGTTCCGCAATGTCGGCCACCTCAAA AACCCGCTCAACGAGGACCTGCCCGTGCTGCGGAGCCGCGATGGGCAGGA GCTCGTGCCCGACATCGGCCGCCGGCTGCTCATGCATCTATACAGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8736:1562..2360-

>mRNA_P-wetherbeei_contig8736.2.1 ID=mRNA_P-wetherbeei_contig8736.2.1|Name=mRNA_P-wetherbeei_contig8736.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig8736:1562..2360- (Phaeothamnion wetherbeei SAG_119_79)
AGGTCGAATGTGGAGGAAGACCAGGAGATCGCCGACGCGCTGCCGGTCAA
GCCGGGGGAGAACGTGCGCTACTTCGTCATGAAATCACTGTCGCACGACA
ACCTCGCGCAGAGCGTGCGGGAGGGGCGGTGGCGGACGCGGCGGCTGGCG
GCGACACGCATGAACGAGTCGTTTGCGGTGTGCGACCAGGTCATCGTCGT
CTTCAGCGTCAACGAGAGCAGGCGAGTCAGTCAGCCGCACTTCCAGGGCT
GCGCCCGCATGACGACGCCCACCAACCGCGACGCTCGCGCCGGCGGCGCC
GACCTATGGGACGCCGTCTTCGGCGTCGGGTGGCTGCGGCTGTGCGAGCT
GCCGTTCCGCAATGTCGGCCACCTCAAAAACCCGCTCAACGAGGACCTGC
CCGTGCTGCGGAGCCGCGATGGGCAGGAGCTCGTGCCCGACATCGGCCGC
CGGCTGCTCATGCATCTATACAGGTAA
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