mRNA_P-wetherbeei_contig8721.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8721.2.1
Unique NamemRNA_P-wetherbeei_contig8721.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: UPI000B4A8369 (redoxin domain-containing protein n=2 Tax=unclassified Kineosporia TaxID=2626061 RepID=UPI000B4A8369)

HSP 1 Score: 176 bits (447), Expect = 1.960e-50
Identity = 79/130 (60.77%), Postives = 96/130 (73.85%), Query Frame = 2
Query:    8 ADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLLGVDADSPPA 397
            ADLRG VVL EFWTF C+NC++  P +KAWH RY ADGL+VV VH+PEF +EA P  V  +V E+ LRYPVALDP+  +WR +G R WP   L D DG+ R+ ++GEGGYD TE AIR LLGV AD+P A
Sbjct:   82 ADLRGRVVLYEFWTFGCVNCRNVQPYVKAWHARYAADGLVVVAVHTPEFGYEADPDAVRAYVEENGLRYPVALDPEGNVWRDFGNRYWPQFYLHDRDGRRRVVKIGEGGYDTTEDAIRALLGVGADAPRA 211          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: UPI001E32DEE4 (thioredoxin family protein n=1 Tax=Lysobacter panacisoli TaxID=1255263 RepID=UPI001E32DEE4)

HSP 1 Score: 149 bits (375), Expect = 2.220e-40
Identity = 67/125 (53.60%), Postives = 82/125 (65.60%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLLGV 376
            T A L+G VVLVEFWT+ACINC H LP +K WHERY  DGL+V+ VHSPE+D E  PANV   +  H +RYPVA D     W A+G R WP + L D +G++  +  GEG Y+ TE  IR LL  
Sbjct:   38 TLAALKGKVVLVEFWTYACINCIHVLPYVKQWHERYADDGLVVIGVHSPEYDEEHDPANVRAAIARHGIRYPVAQDNAFRTWNAYGNRFWPALYLIDREGRIVYRHYGEGDYEVTEQRIRQLLAA 162          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: A0A2V7AGZ8_9BACT (Thioredoxin n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7AGZ8_9BACT)

HSP 1 Score: 149 bits (375), Expect = 3.100e-40
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 2
Query:   14 LRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLL 370
            LRG VVLVEFWT+ C+NC++ +P ++AWHE+Y   GL+VV VHSPEF +E     V        +RYPV  D D  IW  WG+RAWPT+ L D  G +R + +GEG YD+TEAAIR L+
Sbjct:   52 LRGRVVLVEFWTYGCVNCENVIPQLRAWHEKYGPTGLVVVGVHSPEFPWEKRRDKVVAATKRFGIRYPVVQDNDFAIWNRWGVRAWPTMLLVDRQGVVRYRHIGEGEYDETEAAIRRLI 170          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: UPI000EFB1E37 (thioredoxin family protein n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI000EFB1E37)

HSP 1 Score: 148 bits (374), Expect = 8.880e-40
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLL 370
            T +DL+G VVL++FWTFACINCQ TLP +  WH++Y A GL V+ +H+PEF FE    N+   + +H ++YPV +D +   WRA+  R WP + L D DG +R   +GEG YDQTE  IR LL
Sbjct:   75 TVSDLKGSVVLIQFWTFACINCQRTLPYITRWHQQYAAQGLKVIGIHTPEFAFEREVGNIEAALADHQIKYPVPIDNEFTTWRAYSNRFWPHLFLADRDGMIRYDHIGEGAYDQTEQTIRQLL 197          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: A0A1B4Q302_BURCE (Thioredoxin n=24 Tax=Burkholderia cepacia complex TaxID=87882 RepID=A0A1B4Q302_BURCE)

HSP 1 Score: 148 bits (373), Expect = 1.290e-39
Identity = 66/131 (50.38%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLLGVDADSPP 394
            T   LRG VVLV+FWT++CINC HT+P +K W  +Y   GL+VV VH+PE+ FE    NVAD +    +RYPVA D   + W A+G R WP + L D +G++   R GEGGYD+TEAAIR  L   A + P
Sbjct:   57 TLGQLRGKVVLVDFWTYSCINCIHTIPYVKEWDRKYRDQGLVVVGVHTPEYPFERDAGNVADAIRRFGIRYPVAQDNRYDTWNAYGNRYWPALYLIDGNGKIVYTRFGEGGYDKTEAAIRDALARTAKTAP 187          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: A0A0G9H2R6_9GAMM (Thioredoxin n=1 Tax=Dyella japonica DSM 16301 TaxID=1440762 RepID=A0A0G9H2R6_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 2.880e-39
Identity = 68/124 (54.84%), Postives = 81/124 (65.32%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLLG 373
            T   LRG VVLVEFWT  CINC H LP  K  ++RY ADGL+VV VH+PE+D E     + D +   D++YPVA+D D  IW AWG R WP I L D DG +  + VGEG YD+TE  IR LLG
Sbjct:   55 TMQSLRGKVVLVEFWTRECINCVHVLPHTKTLYDRYAADGLVVVGVHTPEYDEERDAHALKDAIGALDIKYPVAMDNDYRIWNAWGNRYWPAIYLIDRDGHVVYRHVGEGDYDRTEERIRQLLG 178          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: UPI0018DA5B48 (thioredoxin family protein n=2 Tax=Massilia antarctica TaxID=2765360 RepID=UPI0018DA5B48)

HSP 1 Score: 151 bits (381), Expect = 5.120e-39
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLLGVDADSP 391
            T A LRG VVLV+FWT++CINC  T+P ++AWH++Y   GL VV VH+PEF FEA   NV   V    + +PVALD D  IW+AW  RAWP + L D++G++R +++GEGGYD+ E AI++LL      P
Sbjct:   60 TPAQLRGKVVLVDFWTYSCINCIRTMPYVRAWHDKYRGQGLAVVGVHTPEFKFEADQDNVNAAVARFRIDFPVALDSDQRIWQAWRNRAWPALYLVDANGRIRYRQLGEGGYDKLERAIQSLLAEARGGP 189          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: A0A2P8WAQ5_9CYAN (Redoxin n=1 Tax=filamentous cyanobacterium CCT1 TaxID=2107702 RepID=A0A2P8WAQ5_9CYAN)

HSP 1 Score: 146 bits (369), Expect = 5.330e-39
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLLG 373
            T A LRG+VVL++FWTF CINCQ TLP++  WH+RY   GL ++ VH+PEF +E    N+   + ++D+ YPV LD D + WRA+  R WP + L + DG LR   +GEG YD TE  IR LLG
Sbjct:   78 TVASLRGNVVLLQFWTFGCINCQRTLPALVGWHQRYADQGLKIIGVHTPEFAYERDVNNIRRALEQYDITYPVPLDNDFQTWRAYSNRYWPHLFLANRDGFLRYDHIGEGAYDTTEQTIRALLG 201          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: UPI0018927D77 (thioredoxin family protein n=1 Tax=Lysobacter niastensis TaxID=380629 RepID=UPI0018927D77)

HSP 1 Score: 145 bits (367), Expect = 5.520e-39
Identity = 66/123 (53.66%), Postives = 80/123 (65.04%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLL 370
            T A LRG VVLVEFWT+ CINC H LP +K WHERY   GL+VV VH+PE+  E +  N+   V    + YPVA D D   W A+G R WP + L D DG++  Q  GEGGYD TEA I++LL
Sbjct:   54 TMAQLRGKVVLVEFWTYDCINCIHVLPHVKQWHERYKEQGLVVVGVHTPEYGHEKILGNLQGAVKRFGIGYPVAQDNDYRTWDAFGNRYWPALYLIDQDGRIVYQHFGEGGYDDTEARIQSLL 176          
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Match: A0A7G6V6Y4_9BURK (Thiol-disulfide oxidoreductase YkuV n=99 Tax=Burkholderiaceae TaxID=119060 RepID=A0A7G6V6Y4_9BURK)

HSP 1 Score: 146 bits (368), Expect = 5.940e-39
Identity = 64/123 (52.03%), Postives = 85/123 (69.11%), Query Frame = 2
Query:    2 TAADLRGHVVLVEFWTFACINCQHTLPSMKAWHERYTADGLIVVTVHSPEFDFEAVPANVADFVHEHDLRYPVALDPDMEIWRAWGIRAWPTIRLFDSDGQLRLQRVGEGGYDQTEAAIRTLL 370
            T   LRG VVLV+FWT++CINC HT+P +  W+ +Y   GL+VV VH+PE+ FE    NVAD +   D+RYPVA D   + WRA+G + WP + L D++G++   R GEGGYD+TEAAIR  L
Sbjct:   57 TLDQLRGKVVLVDFWTYSCINCIHTIPYVNDWYRKYRDQGLVVVGVHTPEYPFERDAKNVADAIRRFDIRYPVAQDNRYDTWRAYGNQYWPALYLIDANGKIVYTRYGEGGYDKTEAAIRGAL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8721.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B4A83691.960e-5060.77redoxin domain-containing protein n=2 Tax=unclassi... [more]
UPI001E32DEE42.220e-4053.60thioredoxin family protein n=1 Tax=Lysobacter pana... [more]
A0A2V7AGZ8_9BACT3.100e-4052.94Thioredoxin n=1 Tax=Candidatus Rokubacteria bacter... [more]
UPI000EFB1E378.880e-4050.41thioredoxin family protein n=1 Tax=Leptolyngbya sp... [more]
A0A1B4Q302_BURCE1.290e-3950.38Thioredoxin n=24 Tax=Burkholderia cepacia complex ... [more]
A0A0G9H2R6_9GAMM2.880e-3954.84Thioredoxin n=1 Tax=Dyella japonica DSM 16301 TaxI... [more]
UPI0018DA5B485.120e-3951.54thioredoxin family protein n=2 Tax=Massilia antarc... [more]
A0A2P8WAQ5_9CYAN5.330e-3950.81Redoxin n=1 Tax=filamentous cyanobacterium CCT1 Ta... [more]
UPI0018927D775.520e-3953.66thioredoxin family protein n=1 Tax=Lysobacter nias... [more]
A0A7G6V6Y4_9BURK5.940e-3952.03Thiol-disulfide oxidoreductase YkuV n=99 Tax=Burkh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8721contigP-wetherbeei_contig8721:1658..2710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1336243.JAEA01000006_gene431
Preferred nameMA20_17170
PFAMsDsbD
Model size1055
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06196
KEGG TC5.A.1.2
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.71e-24
EggNOG OGsCOG0785@1|root,COG0785@2|Bacteria,1RCP7@1224|Proteobacteria,2TSAI@28211|Alphaproteobacteria,1JVP8@119045|Methylobacteriaceae
DescriptionCytochrome C biogenesis protein transmembrane region
Cds size1053
COG categoryO
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187056.105809-CDS-P-wetherbeei_contig8721:1657..27101683187056.105809-CDS-P-wetherbeei_contig8721:1657..2710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8721 1658..2710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8721.2.1prot_P-wetherbeei_contig8721.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8721 1658..2710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8721.2.1

>prot_P-wetherbeei_contig8721.2.1 ID=prot_P-wetherbeei_contig8721.2.1|Name=mRNA_P-wetherbeei_contig8721.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=351bp
DRRRPARPRGARRVLDLRVHQLPAHAAVHEGVARALHRRRSDRGHRAQPG
VRFRGRSGERRRLRARARPALPRCARSRHGDLAGMGHPCVADDPAVRQRW
TAPPAARRRGRLRPDRGSDPHAPGRGRRQPTGMSVVALLALFGAGVVASI
SPCSVPLLPGYLLVAGDSSALERHERVRRLAAFVLAVVGTFVVLGAAAGS
IGGIDLDPRILERIGGAVLLVLAAMLLVGLRGRGPRFALDPSFGRWRAVA
LGVGTAAAWTPCVGPLLGAALTAAAGSGSVWRGSILLAAFALGVLTPFVV
LAAAPWPAVRAWTRRSGAALSHVSVGLMALLGIALIAGWYDRFVALLPVD
*
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mRNA from alignment at P-wetherbeei_contig8721:1658..2710-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8721.2.1 ID=mRNA_P-wetherbeei_contig8721.2.1|Name=mRNA_P-wetherbeei_contig8721.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1053bp|location=Sequence derived from alignment at P-wetherbeei_contig8721:1658..2710- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCCGCCGACCTGCGCGGCCACGTGGTGCTCGTCGAGTTCTGGACCT TCGCGTGCATCAACTGCCAGCACACGCTGCCGTCCATGAAGGCGTGGCAC GAGCGCTACACCGCCGACGGTCTGATCGTGGTCACCGTGCACAGCCCGGA GTTCGATTTCGAGGCCGTTCCGGCGAACGTCGCCGACTTCGTGCACGAGC ACGACCTGCGCTACCCCGTTGCGCTCGATCCCGACATGGAGATCTGGCGG GCATGGGGCATCCGTGCGTGGCCGACGATCCGGCTGTTCGACAGCGATGG ACAGCTCCGCCTGCAGCGCGTCGGCGAGGGCGGCTACGACCAGACCGAGG CAGCGATCCGCACGCTCCTGGGCGTGGACGCCGACAGCCCACCGGCATGA GCGTGGTGGCGCTGCTGGCGCTGTTCGGCGCCGGCGTCGTCGCCTCGATC AGCCCGTGCAGCGTGCCGCTCCTGCCGGGCTACCTGTTGGTCGCCGGCGA CTCGTCAGCGCTCGAGCGTCACGAGCGCGTTCGACGTCTCGCAGCCTTTG TGCTCGCGGTCGTCGGCACGTTCGTCGTGCTCGGCGCCGCGGCGGGATCG ATCGGCGGGATCGATCTCGATCCGCGAATCCTCGAGCGGATCGGCGGGGC TGTGTTGCTCGTCCTCGCGGCGATGTTGCTCGTCGGTCTGCGCGGCCGCG GTCCGCGCTTCGCGCTCGATCCGTCGTTCGGGCGTTGGCGTGCCGTCGCG TTGGGTGTCGGCACGGCCGCTGCATGGACGCCGTGCGTCGGCCCGTTGCT CGGCGCAGCGCTGACCGCCGCTGCCGGATCCGGCTCGGTGTGGCGCGGTT CGATCCTGCTCGCCGCGTTCGCGCTGGGTGTCCTCACCCCGTTCGTCGTG CTCGCTGCAGCGCCGTGGCCGGCAGTGCGCGCGTGGACGCGCCGCAGCGG CGCGGCGCTCTCACACGTCAGCGTCGGTCTGATGGCACTGCTCGGCATCG CCTTGATCGCCGGCTGGTACGACCGCTTCGTCGCACTCCTTCCGGTCGAC TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8721:1658..2710-

>mRNA_P-wetherbeei_contig8721.2.1 ID=mRNA_P-wetherbeei_contig8721.2.1|Name=mRNA_P-wetherbeei_contig8721.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1053bp|location=Sequence derived from alignment at P-wetherbeei_contig8721:1658..2710- (Phaeothamnion wetherbeei SAG_119_79)
GACCGCCGCCGACCTGCGCGGCCACGTGGTGCTCGTCGAGTTCTGGACCT
TCGCGTGCATCAACTGCCAGCACACGCTGCCGTCCATGAAGGCGTGGCAC
GAGCGCTACACCGCCGACGGTCTGATCGTGGTCACCGTGCACAGCCCGGA
GTTCGATTTCGAGGCCGTTCCGGCGAACGTCGCCGACTTCGTGCACGAGC
ACGACCTGCGCTACCCCGTTGCGCTCGATCCCGACATGGAGATCTGGCGG
GCATGGGGCATCCGTGCGTGGCCGACGATCCGGCTGTTCGACAGCGATGG
ACAGCTCCGCCTGCAGCGCGTCGGCGAGGGCGGCTACGACCAGACCGAGG
CAGCGATCCGCACGCTCCTGGGCGTGGACGCCGACAGCCCACCGGCATGA
GCGTGGTGGCGCTGCTGGCGCTGTTCGGCGCCGGCGTCGTCGCCTCGATC
AGCCCGTGCAGCGTGCCGCTCCTGCCGGGCTACCTGTTGGTCGCCGGCGA
CTCGTCAGCGCTCGAGCGTCACGAGCGCGTTCGACGTCTCGCAGCCTTTG
TGCTCGCGGTCGTCGGCACGTTCGTCGTGCTCGGCGCCGCGGCGGGATCG
ATCGGCGGGATCGATCTCGATCCGCGAATCCTCGAGCGGATCGGCGGGGC
TGTGTTGCTCGTCCTCGCGGCGATGTTGCTCGTCGGTCTGCGCGGCCGCG
GTCCGCGCTTCGCGCTCGATCCGTCGTTCGGGCGTTGGCGTGCCGTCGCG
TTGGGTGTCGGCACGGCCGCTGCATGGACGCCGTGCGTCGGCCCGTTGCT
CGGCGCAGCGCTGACCGCCGCTGCCGGATCCGGCTCGGTGTGGCGCGGTT
CGATCCTGCTCGCCGCGTTCGCGCTGGGTGTCCTCACCCCGTTCGTCGTG
CTCGCTGCAGCGCCGTGGCCGGCAGTGCGCGCGTGGACGCGCCGCAGCGG
CGCGGCGCTCTCACACGTCAGCGTCGGTCTGATGGCACTGCTCGGCATCG
CCTTGATCGCCGGCTGGTACGACCGCTTCGTCGCACTCCTTCCGGTCGAC
TGA
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