mRNA_P-wetherbeei_contig8714.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8714.1.1
Unique NamemRNA_P-wetherbeei_contig8714.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: D7FR30_ECTSI (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR30_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.870e-82
Identity = 123/176 (69.89%), Postives = 141/176 (80.11%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGLRVDGSTKPVGYLSFVIFTQHVEEGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEKEKKTAQGRSFAR 534
            FDRAF AL  G   ++P  ++PWRK E VY+VPQADRVTVIFA+DF   DERAIAK FL EF DA R ANN+PPC  TP+ PLEL+ + +  S  PVG+LSFVIF QHV+ GR+EKTITLLTGFRNYLHYHLKATKTYMHMRMRKRV  LLQVLNRA+P +E K KKTA+GR+F R
Sbjct:    5 FDRAFDALREGRGGSVPPAAIPWRKNEVVYVVPQADRVTVIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQVLNRAVPEEEAKAKKTAKGRTFNR 180
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: A0A835ZH76_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH76_9STRA)

HSP 1 Score: 249 bits (636), Expect = 5.180e-82
Identity = 124/177 (70.06%), Postives = 146/177 (82.49%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGLRVDGSTKPVGYLSFVIFTQHVEEGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEKEKKTAQGRSFARS 537
            F +AF +LL G++ ++P+M+LPWRK+E V+IVPQADRVTVIFA+DF   DERA+ KVFL EFADA RSANNAPP N   E PLEL+  RV G  KPVG+LSF+IF QHV+EGR E  +TLLTGFRNYLHYH+KATKTYMHMRMRKRV  LLQVLNRA+P  EEK KKTAQG++F R+
Sbjct:    6 FTKAFASLLGGQSGSLPMMTLPWRKSEDVFIVPQADRVTVIFALDFAEQDERALCKVFLMEFADAQRSANNAPPTNFALEAPLELRSARVRG--KPVGFLSFIIFPQHVQEGRLESCVTLLTGFRNYLHYHIKATKTYMHMRMRKRVVGLLQVLNRAVPEAEEKAKKTAQGKTFVRA 180
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: A0A6H5L1H1_9PHAE (Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H1_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 9.330e-80
Identity = 121/176 (68.75%), Postives = 141/176 (80.11%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGLRVDGSTKPVGYLSFVIFTQHVEEGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEKEKKTAQGRSFAR 534
            FDRAF AL  G   ++P  ++PWRK E VY+VPQADRVT+IFA+DF   DERAIAK FL EF DA R ANN+PPC  TP+ PLEL+ + +  S  PVG+LSFVIF QHV+ GR+EKTITLLTGFRNYLHYHLKATKTYMHMRMRKRV  LLQVL+RA+P +E K KKTA+GR+F R
Sbjct:  131 FDRAFDALREGRGGSVPPAAIPWRKNEVVYVVPQADRVTIIFAIDFTESDERAIAKSFLMEFVDAQRVANNSPPCTFTPDAPLELKSMPMPPSHTPVGFLSFVIFPQHVDRGRQEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVVGLLQVLSRAVPEEEAKAKKTAKGRTFNR 306
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: T0RSJ4_SAPDV (Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RSJ4_SAPDV)

HSP 1 Score: 178 bits (452), Expect = 1.870e-52
Identity = 91/180 (50.56%), Postives = 128/180 (71.11%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGL-RVDGSTKPVGYLSFVIFTQHVE-EGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEKE--KKTAQGRSFAR 534
            FD  F AL    +S++  + +P+R+ ET+Y++PQADR+ ++F+V F    ++AIA++FL EFA+A R  NNAPP +   +PPLEL+G+  +  ST  VGYLSF IF  H++ + ++ K  TL+ GFRNYLHYH+KA+KTYMH+RMRKRV  LLQVLNRA P  +  +  KKT  G++F R
Sbjct:  123 FDHCFLALHADASSSLSPIQIPFRRQETIYVLPQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDTDAKRAKACTLIQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQVLNRAQPAKDPSKATKKTITGKTFDR 302
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: A0A067CQD1_SAPPC (Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQD1_SAPPC)

HSP 1 Score: 178 bits (451), Expect = 2.650e-52
Identity = 91/180 (50.56%), Postives = 128/180 (71.11%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGL-RVDGSTKPVGYLSFVIFTQHVE-EGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEKE--KKTAQGRSFAR 534
            FD  F AL    +S++  + +P+R+ ET+Y++PQADR+ ++F+V F    ++AIA++FL EFA+A R  NNAPP +   +PPLEL+G+  +  ST  VGYLSF IF  H++ + ++ K  TL+ GFRNYLHYH+KA+KTYMH+RMRKRV  LLQVLNRA P  +  +  KKT  G++F R
Sbjct:  123 FDHCFLALHADASSSLSPIQIPFRRQETIYVLPQADRIVIVFSVAFQDKTDQAIARIFLQEFAEARRHVNNAPPVSFGKDPPLELRGVPNLRQSTDHVGYLSFAIFKTHIDSDAKRAKACTLVQGFRNYLHYHIKASKTYMHIRMRKRVDLLLQVLNRAQPAKDPSKATKKTITGKTFDR 302
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: A0A7S2AY13_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AY13_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.010e-51
Identity = 88/181 (48.62%), Postives = 126/181 (69.61%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPC--NLTPEPPLELQGLRVDGSTKPVGYLSFVIFTQHVE-EGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAI-PGDEEKEKKTAQGRSFARS 537
            F +AF  L  G  S++PLM+L WR  E ++I P   R TV++AV+FP + ++AIA+V L +FA      N APPC  N   +PP+E++ L +D  T   G+L+FV+F  H+  E + +K++ LL+GFRNYLHYH+KA+KTY+HMRMRK+V T LQVLNRA+   D  +EKKT+ G++F R+
Sbjct:   46 FTKAFNGLKDGTGSSLPLMTLDWRPGEAIWIKPADQRCTVVYAVNFPEETDKAIARVMLQQFAKESAKINGAPPCSYNEPDKPPMEVRDLPMDQYTHCCGFLTFVVFPAHISSEAKFDKSVALLSGFRNYLHYHIKASKTYLHMRMRKKVQTWLQVLNRAVHEQDTPQEKKTSSGKTFKRA 226
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: G4Z955_PHYSP (Arp2/3 complex 34 kDa subunit n=30 Tax=Peronosporaceae TaxID=4777 RepID=G4Z955_PHYSP)

HSP 1 Score: 174 bits (440), Expect = 1.160e-50
Identity = 91/181 (50.28%), Postives = 125/181 (69.06%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGLR-VDGSTKPVGYLSFVIFTQHVEEGRKE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEK--EKKTAQGRSFARS 537
            F++ F AL  G AS++  + +P+R+ ET+Y++PQADR+ ++++V F    ++AIA+VFL EF D  R+ NNAPP     +PPLEL+G   +  S   VGYLS  IF  HV+   K  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQVLNRA P  ++   +KKT  GR+FAR+
Sbjct:  123 FEQCFEALQNGNASSLGPVQIPYRRNETIYVLPQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGKDPPLELRGAPGLRNSPDLVGYLSIAIFPTHVDTTEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRARPEKDQSKTQKKTITGRTFARA 303
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: A0A024GEA7_9STRA (Arp2/3 complex 34 kDa subunit n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GEA7_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.640e-50
Identity = 92/181 (50.83%), Postives = 125/181 (69.06%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGL-RVDGSTKPVGYLSFVIFTQHVEEGRK-EKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEKE--KKTAQGRSFARS 537
            F++ F AL  G A+A+  + +P+R+ E +YI+PQ+DRV V+F+V F    ++AIA+VFL E  D+ R+ NNAPP     +PPLEL+G   + G    VGYLSF IFT H++   K EK  T+L GFRNYLHYH+K +KTY+H+RMRKRV  LLQVLNR+ P  +  +  KKT  GR+F R+
Sbjct:  123 FEQCFQALKAGSAAALGAIQIPFRRYECIYILPQSDRVVVVFSVFFEDKTDQAIARVFLQELVDSRRAVNNAPPVAFNKDPPLELRGASNLHGGKGLVGYLSFAIFTGHIDTIEKCEKAATMLQGFRNYLHYHIKCSKTYLHIRMRKRVDLLLQVLNRSRPERDPAKVTKKTITGRTFVRA 303
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: A0A484E080_BRELC (Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E080_BRELC)

HSP 1 Score: 173 bits (438), Expect = 2.320e-50
Identity = 92/181 (50.83%), Postives = 124/181 (68.51%), Query Frame = 1 
Query:    7 FDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGLR-VDGSTKPVGYLSFVIFTQHVEEGRKE-KTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDEEK--EKKTAQGRSFARS 537
            F++ F AL  G AS +  + +P+R+ ETVY++PQADR+ ++++V F    ++AIA+VFL EF D  R+ NNAPP     +PPLEL+G   +  S   VGYLS  IF  HV+   K  K  TL+ G RNYLHYH+KA+KTY+H+RMRKRV  LLQVLNRA P  ++   +KKT  GR+FAR+
Sbjct:  123 FEQCFAALQSGNASTLGAVQIPFRRNETVYVLPQADRIVIVYSVCFDDKTDQAIARVFLQEFVDTRRTVNNAPPVAFGRDPPLELRGAPGLCQSPDLVGYLSLAIFPTHVDTAEKRIKAATLVQGLRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRARPEKDQTKTQKKTITGRTFARA 303
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BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Match: A0A024U441_9STRA (Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U441_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.380e-50
Identity = 93/181 (51.38%), Postives = 125/181 (69.06%), Query Frame = 1 
Query:   10 DRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPRDDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQ---GLRVDGSTKPVGYLSFVIFTQHVE-EGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVATLLQVLNRAIPGDE--EKEKKTAQGRSFAR 534
            D  F AL  G+A  +  + +P+R+ ET+YI+PQ DR+ ++F+V F    ++AIA+VFL EFA+A R  NNAPP +   +PPLEL+   GLR       VGYLSF IF  H++ + ++EK  TLL GFRNYLHYH+KA+KTY+H+RMRKRV  LLQVLNRA P  +  +  KKT  G++F R
Sbjct:  124 DHCFLALHAGQAKVLSPIQIPFRRQETIYILPQDDRIVIVFSVAFQDKTDQAIARVFLQEFAEARRHVNNAPPVSFGKDPPLELRAVSGLRP--CADHVGYLSFAIFKSHIDTDAKREKACTLLQGFRNYLHYHIKASKTYLHIRMRKRVDLLLQVLNRAQPPKDPTKTSKKTITGKTFDR 302
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8714.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR30_ECTSI1.870e-8269.89Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus s... [more]
A0A835ZH76_9STRA5.180e-8270.06Arp2/3 complex 34 kDa subunit n=1 Tax=Tribonema mi... [more]
A0A6H5L1H1_9PHAE9.330e-8068.75Arp2/3 complex 34 kDa subunit n=1 Tax=Ectocarpus s... [more]
T0RSJ4_SAPDV1.870e-5250.56Arp2/3 complex 34 kDa subunit n=1 Tax=Saprolegnia ... [more]
A0A067CQD1_SAPPC2.650e-5250.56Arp2/3 complex 34 kDa subunit n=3 Tax=Saprolegniac... [more]
A0A7S2AY13_9STRA2.010e-5148.62Arp2/3 complex 34 kDa subunit n=1 Tax=Florenciella... [more]
G4Z955_PHYSP1.160e-5050.28Arp2/3 complex 34 kDa subunit n=30 Tax=Peronospora... [more]
A0A024GEA7_9STRA1.640e-5050.83Arp2/3 complex 34 kDa subunit n=1 Tax=Albugo candi... [more]
A0A484E080_BRELC2.320e-5050.83Arp2/3 complex 34 kDa subunit n=1 Tax=Bremia lactu... [more]
A0A024U441_9STRA2.380e-5051.38Arp2/3 complex 34 kDa subunit n=4 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8714contigP-wetherbeei_contig8714:344..2298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR30
Preferred nameARPC2
PFAMsP34-Arc
Model size540
Max annot lvl2759|Eukaryota
KEGG koko:K05758
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000147,GO:0000226,GO:0000302,GO:0000902,GO:0000904,GO:0001667,GO:0001726,GO:0002009,GO:0002102,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005102,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0005886,GO:0005912,GO:0005924,GO:0005925,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006898,GO:0006909,GO:0006928,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009636,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009986,GO:0009987,GO:0010026,GO:0010033,GO:0010035,GO:0010090,GO:0010243,GO:0010591,GO:0010592,GO:0010631,GO:0010638,GO:0010720,GO:0010769,GO:0010770,GO:0010810,GO:0010811,GO:0012505,GO:0012506,GO:0014070,GO:0014910,GO:0014911,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019894,GO:0019899,GO:0022411,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030042,GO:0030054,GO:0030055,GO:0030139,GO:0030141,GO:0030154,GO:0030155,GO:0030175,GO:0030334,GO:0030335,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030834,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031253,GO:0031256,GO:0031334,GO:0031344,GO:0031346,GO:0031410,GO:0031941,GO:0031982,GO:0032271,GO:0032273,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032535,GO:0032587,GO:0032879,GO:0032880,GO:0032940,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0032991,GO:0033043,GO:0033157,GO:0033267,GO:0033554,GO:0034021,GO:0034314,GO:0034599,GO:0034614,GO:0034622,GO:0035254,GO:0035556,GO:0035650,GO:0035690,GO:0036119,GO:0036120,GO:0036194,GO:0036195,GO:0036477,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042542,GO:0042995,GO:0043005,GO:0043025,GO:0043197,GO:0043198,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043244,GO:0043254,GO:0043624,GO:0043679,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044306,GO:0044309,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0045202,GO:0045335,GO:0045472,GO:0045595,GO:0045597,GO:0045785,GO:0046677,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048468,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051015,GO:0051049,GO:0051050,GO:0051094,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051258,GO:0051261,GO:0051270,GO:0051272,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060284,GO:0060341,GO:0060429,GO:0060491,GO:0061024,GO:0061645,GO:0061825,GO:0061826,GO:0061827,GO:0061830,GO:0061834,GO:0061835,GO:0065003,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070301,GO:0070358,GO:0070528,GO:0070848,GO:0070849,GO:0070887,GO:0071236,GO:0071310,GO:0071362,GO:0071363,GO:0071364,GO:0071407,GO:0071417,GO:0071437,GO:0071495,GO:0071801,GO:0071803,GO:0071840,GO:0071933,GO:0071944,GO:0072752,GO:0090066,GO:0090087,GO:0090130,GO:0090132,GO:0090313,GO:0090314,GO:0090316,GO:0090558,GO:0090626,GO:0090723,GO:0090725,GO:0097223,GO:0097237,GO:0097305,GO:0097306,GO:0097327,GO:0097435,GO:0097440,GO:0097447,GO:0097458,GO:0097708,GO:0098588,GO:0098590,GO:0098657,GO:0098793,GO:0098794,GO:0098805,GO:0098858,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0150034,GO:1900024,GO:1900026,GO:1901355,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901879,GO:1902115,GO:1902117,GO:1902743,GO:1902745,GO:1902903,GO:1902905,GO:1903533,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1905924,GO:1905926,GO:1990089,GO:1990090,GO:2000145,GO:2000147,GO:2000249,GO:2000251,GO:2000812,GO:2000814
Exons5
Evalue3.07e-83
EggNOG OGsCOG4690@1|root,KOG2826@2759|Eukaryota
DescriptionArp2/3 complex-mediated actin nucleation
Cds size540
COG categoryE
BRITEko00000,ko00001,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187055.803588-CDS-P-wetherbeei_contig8714:343..4511683187055.803588-CDS-P-wetherbeei_contig8714:343..451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8714 344..451 +
1683187055.8137836-CDS-P-wetherbeei_contig8714:904..9701683187055.8137836-CDS-P-wetherbeei_contig8714:904..970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8714 905..970 +
1683187055.8222039-CDS-P-wetherbeei_contig8714:1257..13961683187055.8222039-CDS-P-wetherbeei_contig8714:1257..1396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8714 1258..1396 +
1683187055.8302004-CDS-P-wetherbeei_contig8714:1745..18951683187055.8302004-CDS-P-wetherbeei_contig8714:1745..1895Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8714 1746..1895 +
1683187055.8382626-CDS-P-wetherbeei_contig8714:2221..22981683187055.8382626-CDS-P-wetherbeei_contig8714:2221..2298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8714 2222..2298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8714.1.1prot_P-wetherbeei_contig8714.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8714 344..2298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8714.1.1

>prot_P-wetherbeei_contig8714.1.1 ID=prot_P-wetherbeei_contig8714.1.1|Name=mRNA_P-wetherbeei_contig8714.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MCFDRAFTALLRGEASAIPLMSLPWRKTETVYIVPQADRVTVIFAVDFPR
DDERAIAKVFLSEFADAHRSANNAPPCNLTPEPPLELQGLRVDGSTKPVG
YLSFVIFTQHVEEGRKEKTITLLTGFRNYLHYHLKATKTYMHMRMRKRVA
TLLQVLNRAIPGDEEKEKKTAQGRSFARS*
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mRNA from alignment at P-wetherbeei_contig8714:344..2298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8714.1.1 ID=mRNA_P-wetherbeei_contig8714.1.1|Name=mRNA_P-wetherbeei_contig8714.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1955bp|location=Sequence derived from alignment at P-wetherbeei_contig8714:344..2298+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCTTTGACCGGGCCTTCACGGCGCTCCTCAGGGGCGAAGCGAGCGC
CATCCCGCTCATGTCGCTGCCGTGGAGAAAGACGGAGACCGTGTACATCG
TGCCGCAGGTGAGCACTTGAGAGAAAGAAGGGAGAAGAAGAAAGTACGGG
AGGAAAGCGAAAGGTTCTTGTTGCTGCTGTCGCCAACCGTGTGCATGTCA
TGATTTGCCTTTTCGGGCTCCGCGCCTGGGTGCGTAAATCGCGGTTGTAT
CATTCTTTTATGCGCGATGGCTGTGCAGCTGGCTAGCAGAAGCCCCTGCG
GATCGAGTATGTGCCGACCGGGTATGAGAGGAACGTGCGGTTATTAAGAA
TGGTCCCGACAAAATGCAACTAACCCTGGGCGGCGGATGCGGCGGGTGCA
GCTTTGTCTGTCTCTGCCCCCAGCTAAGGAAATTTAACAGTATGCGGTGG
GCGAGTTTAACCATACACCCAGAAAACAGTTGAACGCTTTCCGCCTCTCC
CAATCCGTTCACTTTATTCCTGGGACGATCATATCGAATTTTTCGTTGAC
GCCCGCGTCAGGCGGACCGTGTGACGGTCATTTTTGCGGTGGACTTCCCG
AGGGATGATGAGAGAGCCATTGCCAAGGTGAGGCCAGGCCAGGCACGGCG
GGAGCGGCCTTGCAAGCCGCTTCTCTTTGAAAGGATCGAAACGGATTTGA
TTGTTTGCCGCGCGGCCCTCCGCGTGTAAACATGGCTTCTGCGAGCTCTT
CTTTCCTGCCGCGTTGCGGTAGCTTCTGCTTCGGTGAGAGATGTTCCCGT
GCATAACCTCTGCCGTCGCCGACATTGCCGACCCTGCTGCTGTTGCCAAC
CTCATAGACGATGCCACCACCGCTGCCGCCCGCCGCTGCCGCCACCACTT
TGTGATACCGGCAGGTTTTCCTGAGCGAGTTTGCGGACGCACACCGGTCC
GCCAATAACGCGCCGCCGTGCAACCTGACGCCTGAGCCACCGCTGGAGCT
GCAGGGGCTGCGCGTCGACGGCTCGACCAAGCCCGTCGGGTACCTCAGCT
TCGGTGAGTCCGGTTCACTGGGTAAACAACATGGGAAAGCTCACGGGTTG
TGAATCAATCTGCTTAGAAGTGCGCTATACAAAAGTAAGAAAGGTTCACT
AGCCGAGTTCTGGAAAGGCACTGTCTCCGGCTCGCCGTGCCGTTGTGTCA
GCACAGAGTAAACGGGCAGCTGGAAGCTCCGAAAGAGAATGATTGACGCA
TTCCGTTATACCCACCGCCGAAAGCAAGCCGAGTACCGCAGAAATACTCC
AACAAACACCGTACAAAGACTGCTAACCTTGGCTTGTGTTGTGGAAACCG
TCCTGCCCTCGTTCCCTTCCTTTCTCTGAGACCGCCTTTCCCCTCACTGC
AGTGATATTTACGCAGCACGTGGAGGAGGGGCGCAAGGAAAAGACCATCA
CGTTGCTGACGGGCTTCCGCAACTACCTCCACTACCACCTCAAGGCCACC
AAGACGTACATGCACATGCGCATGCGCAAGCGGGTCGCCACCCTGCTCCA
AGGTGCGCTGCGGTGCTGTGTGGGGCGGTGCTGAGCGGGGCGGCGTGGCG
CGGCGCTACCGTCCCGGTTTTGTGGCCTGTTGCTTTGCTGCTTTTTCAAG
AGCTCTCCAATGTGCCGGTGGGCGGCGTCCGGCCGATCAGGCCTCGCACG
CTCTTTATGTTTTCCGCAGCTCTCTTTTGGCTCGTCTTGCTGCCGGCGAA
GGTCTTCCTAGGAATGGGAACCAGAAACGCGCTTCCAACTGTCCCTCAAT
TCGAACTCTTGCCTTCTTATACGCCATTTGTTGCCACGGTTGTCTCTTGG
CGCCGCGCCATCCAAACGACGACGGCAGTGCTCAACCGTGCCATTCCGGG
GGACGAAGAGAAGGAGAAGAAGACGGCACAGGGGCGGTCGTTCGCGCGGT
CATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8714:344..2298+

>mRNA_P-wetherbeei_contig8714.1.1 ID=mRNA_P-wetherbeei_contig8714.1.1|Name=mRNA_P-wetherbeei_contig8714.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig8714:344..2298+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCTTTGACCGGGCCTTCACGGCGCTCCTCAGGGGCGAAGCGAGCGC
CATCCCGCTCATGTCGCTGCCGTGGAGAAAGACGGAGACCGTGTACATCG
TGCCGCAGGCGGACCGTGTGACGGTCATTTTTGCGGTGGACTTCCCGAGG
GATGATGAGAGAGCCATTGCCAAGGTTTTCCTGAGCGAGTTTGCGGACGC
ACACCGGTCCGCCAATAACGCGCCGCCGTGCAACCTGACGCCTGAGCCAC
CGCTGGAGCTGCAGGGGCTGCGCGTCGACGGCTCGACCAAGCCCGTCGGG
TACCTCAGCTTCGTGATATTTACGCAGCACGTGGAGGAGGGGCGCAAGGA
AAAGACCATCACGTTGCTGACGGGCTTCCGCAACTACCTCCACTACCACC
TCAAGGCCACCAAGACGTACATGCACATGCGCATGCGCAAGCGGGTCGCC
ACCCTGCTCCAAGTGCTCAACCGTGCCATTCCGGGGGACGAAGAGAAGGA
GAAGAAGACGGCACAGGGGCGGTCGTTCGCGCGGTCATGA
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