mRNA_P-wetherbeei_contig869.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig869.3.1
Unique NamemRNA_P-wetherbeei_contig869.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig869.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig869contigP-wetherbeei_contig869:3762..7069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2640
Hectar predicted targeting categoryother localisation
Exons5
Cds size1833
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig869.3.1prot_P-wetherbeei_contig869.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig869 4870..7069 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187054.381335-UTR-P-wetherbeei_contig869:3761..39211683187054.381335-UTR-P-wetherbeei_contig869:3761..3921Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig869 3762..3921 +
1683187054.3914244-UTR-P-wetherbeei_contig869:4101..44621683187054.3914244-UTR-P-wetherbeei_contig869:4101..4462Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig869 4102..4462 +
1683187054.4016726-UTR-P-wetherbeei_contig869:4573..48061683187054.4016726-UTR-P-wetherbeei_contig869:4573..4806Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig869 4574..4806 +
1683187054.4120734-UTR-P-wetherbeei_contig869:4818..48691683187054.4120734-UTR-P-wetherbeei_contig869:4818..4869Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig869 4819..4869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187054.4224877-CDS-P-wetherbeei_contig869:4869..65561683187054.4224877-CDS-P-wetherbeei_contig869:4869..6556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig869 4870..6556 +
1683187054.4325616-CDS-P-wetherbeei_contig869:6923..70691683187054.4325616-CDS-P-wetherbeei_contig869:6923..7069Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig869 6924..7069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig869.3.1

>prot_P-wetherbeei_contig869.3.1 ID=prot_P-wetherbeei_contig869.3.1|Name=mRNA_P-wetherbeei_contig869.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=611bp
MALPTPVPSLAPSSEPTAQPTAQPSLAPSPAPSPQPTAEPSPAPSPAPSP
APTPVPTPKPTSAETPAPTVAETPAPTEEDTPAPTLALAPSPNPTTEATP
APTLAQEDTPSPTPAPSEASPAPSEASPTPAPSATPAPTTLVVAAGVKGS
GFVSPGTDIGCASTDELCATELSEGVAAGFSVSTDEVAVEDVAVVSGRRR
CADRRRELLGVGGAPALKGTTAQEVPGALYNGINGGGDHTSGGGGLRKLA
AAATGSGGGTGVARNGLDSGRRSLQETGDLVFSFVVTLTDDSATEAQQAA
DLIETAVTDLVASLASSLALEAGTVALGQFYYQGKGVALDPLSVTLLGNG
STSVEVAYTGADVSGSGGATSVTGYDVTAKSIALCIVFVCLLAVGTVAVC
SGTIVLMLRNRDGPLKDMKKVGVEKHLEEWPAMSMDEAGGAAAAGVAAEA
AAGITGSGDASNRNSYTYDTHSITLDVADLYQDGEGAGDAGGSGGAPVKA
WDSDSASGSDRRAVAAAAATRVARNSGGRNRSGSNLVPLSMRSPAPAGEE
AAPTMSAYLSSSGVSDYERYSQVLARRKVAFAADGSLPQASPVSASMAAA
GGATTTAAAVP
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mRNA from alignment at P-wetherbeei_contig869:3762..7069+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig869.3.1 ID=mRNA_P-wetherbeei_contig869.3.1|Name=mRNA_P-wetherbeei_contig869.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3308bp|location=Sequence derived from alignment at P-wetherbeei_contig869:3762..7069+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGCTTCGCCGGCATGCCACCCCGGGCCACACCGGAGCGGGTGGGGTC
AGGGCGCCAGCTGCGACAATTTGCCGTAATGAACGGATGGCTGAAGGTCG
TCTTTCTCGCGATATGGTCATTCGCGTGGAGGGCGACCTCGAGGTCTACC
GGTCATGAAGGTGCGTAAGATCATTTAGCCGGCTAATCTAGCCACAACAT
TTGCCTTGGCGTACTGGCGGGATTGTGAAGAGGAGACCCTTGTTGCCCGT
CCCGCGCTGGTCACTTCAATGACCTTCATGCTCGGCTGTTCATTATTCAT
GGCCTAAGAGAAGGAGCTTCCCTCATCCCGCACCCCGCAGCGCATGGCCA
CGTATCGGTGCACCGCCGCCTCGACGAGCCGGCATGCGACTATCCTCTGG
GAGCGCCGTGCATGCTCACGACCGCGACGGGCGACAGCGAACAGGGCCTC
GCAGTTTTCTACGACCCAACATGCCTCGAGAACTCCGCTATTGGATGTAA
CTACATCGAACCGGTGTGCCGGCTATGTTACTTTGACGTGGACCTCTGGA
TATCCAAAAACCCGGACTTTACGCTGAAGGATTACCCAGAGTGCCCATGC
TGCGTCCTCAAGACGCTGGACGTGCCGGTGGCACCGGACTGCGTCCAGAC
GCCGGCGCCCGTGCCGCCTCCGACTGAGATGCCCACGGCGAACCCAACAA
GGTAAGGACGGGGAGAAGTATGCCGCCAATGCCGCCAATTGTTTTGTCTG
CCGCACGACGGTAGTTGGATATAGCTATCGTATAGCACCAAGTTGGGGCA
GGGGAAGAAGAGGATGGCTGAACCTCTCAACTCCGCGCCGGCTACTATGC
CGCTGGTGCGATTGCATCTGTCTAACAGGGTTTCGGTTTCGCGTCCGCTC
TCTCCTCGCTTCACGACGGCAGTTTGCCTACTGCTGTGCCTACGGCTGTG
CCGACTGCTACGCCATCGGCGACTCCGACGGCGCAACCGATGGTTCTCCC
GACGCCTGTTCCATCTCTGGCGCCGTCGTCGGAGCCCACAGCGCAGCCCA
CGGGCAGCCCACGGCGCAGCCTTCTCTGGCGCCGTCCTCGGCCCCATCAC
CGCAGCCGATGGCTCTTCCGACGCCTGTTCCATCTCTGGCGCCCTCGTCG
GAGCCCACAGCGCAGCCCACGGCGCAGCCTTCTCTGGCGCCGTCCCCGGC
GCCATCACCGCAGCCGACGGCGGAACCTTCTCCCGCCCCTTCGCCCGCGC
CGTCGCCGGCTCCTACGCCAGTACCCACGCCGAAGCCGACGTCAGCTGAA
ACGCCGGCGCCCACGGTGGCTGAGACGCCGGCTCCGACTGAGGAAGATAC
ACCTGCTCCGACACTCGCGCTGGCGCCGTCGCCTAACCCCACCACGGAGG
CCACGCCTGCACCGACGCTGGCGCAAGAAGATACGCCCTCGCCGACTCCG
GCGCCGTCAGAGGCGTCTCCGGCGCCGTCAGAGGCGTCTCCGACGCCGGC
CCCCTCGGCCACGCCGGCACCGACGACTCTCGTGGTGGCGGCGGGAGTCA
AGGGAAGCGGCTTTGTCTCGCCGGGCACCGACATTGGCTGCGCTTCGACG
GACGAGCTGTGTGCGACGGAGCTGAGCGAGGGCGTCGCTGCCGGCTTCAG
TGTATCGACAGATGAAGTGGCCGTGGAGGACGTGGCGGTCGTCAGCGGCC
GCCGCCGCTGCGCCGACCGCCGCCGGGAACTGCTTGGTGTCGGCGGCGCT
CCGGCTCTCAAGGGAACTACGGCGCAGGAAGTGCCCGGCGCTCTCTACAA
CGGCATTAATGGCGGCGGCGATCACACCAGTGGCGGCGGCGGGTTACGAA
AGCTCGCCGCTGCGGCCACTGGTAGCGGCGGCGGCACCGGCGTCGCCAGG
AACGGCCTTGACAGCGGCCGCCGGTCGCTGCAGGAGACGGGAGACTTAGT
CTTTTCATTCGTCGTCACGCTGACGGACGACAGCGCCACTGAGGCGCAGC
AGGCGGCAGACCTAATCGAAACCGCCGTAACCGACCTTGTTGCGTCGCTG
GCGTCATCGCTGGCGCTGGAGGCAGGCACGGTCGCCCTGGGTCAGTTCTA
TTACCAGGGGAAGGGGGTCGCACTGGACCCGTTATCGGTTACGCTCCTCG
GCAACGGCTCTACGAGCGTCGAGGTGGCCTATACGGGTGCGGACGTCAGC
GGCAGCGGCGGCGCGACGTCCGTAACCGGCTATGACGTAACGGCCAAGAG
CATCGCGCTCTGCATCGTGTTCGTCTGCCTGCTGGCCGTCGGGACCGTCG
CAGTCTGCTCCGGAACAATTGTGCTCATGCTCCGGAACCGCGACGGACCC
CTCAAGGACATGAAGAAGGTTGGAGTCGAAAAGCACCTCGAGGAGTGGCC
CGCCATGTCGATGGACGAAGCCGGTGGCGCGGCGGCCGCCGGCGTCGCCG
CCGAAGCCGCTGCCGGCATCACCGGCTCTGGCGATGCCAGCAACCGGAAC
AGCTACACGTACGATACGCATTCCATCACGCTCGACGTGGCGGACCTCTA
TCAAGACGGCGAAGGCGCCGGCGATGCCGGTGGCAGCGGCGGCGCCCCCG
TCAAGGCGTGGGATAGCGACTCGGCATCGGGTTCCGACAGACGTGCAGTG
GCGGCCGCAGCGGCGACGCGCGTCGCCCGGAACAGCGGCGGCCGGAATCG
CAGCGGCAGCAATCTGGTCCCGCTCTCCATGCGGTCGCCGGCGCCGGCGG
GCGAGGAGGCGGCGCCGACCATGTCTGCCTACCTAAGCAGCTCCGGTGAG
CCTCCGCGCGTTTTTCGCCTCTTCCAGCGTGCAGCGTGTGGTTCCTTCCT
TTTGGTTCTTTTGTGCCGAAGGGGTCGAGACCAGCAGAGTATTGATTTAC
GCTCCGCTGTTTGAGATGGGTGGGTTTGGCCCGAACGAGACCAGATAGAT
GGGAGAGAAAACGGCAGTGCCATGCCACACCAGTTAAATTGCTTTCTTTC
AGTCGCTTTCTCCTTTCATTTCCGTTACCCGACGTCCGTGTACCGCTCAG
ATTCTTACCTCGTAAGCCTTTTCCTCTCCCAATTCTTCTCGTCCCTCTGC
GCCCGACCCCTCTCTCTGAAAACCCGTGTCTGTGCAATAAAACAAATATA
TTTCTTCTCCAGGCGTCTCGGACTACGAACGATACTCGCAAGTCTTAGCG
AGACGGAAAGTCGCCTTTGCGGCCGACGGGTCCCTGCCCCAAGCCAGCCC
GGTGTCGGCGTCGATGGCTGCTGCCGGCGGCGCCACCACGACCGCCGCCG
CCGTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig869:3762..7069+

>mRNA_P-wetherbeei_contig869.3.1 ID=mRNA_P-wetherbeei_contig869.3.1|Name=mRNA_P-wetherbeei_contig869.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1833bp|location=Sequence derived from alignment at P-wetherbeei_contig869:3762..7069+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCTTCCGACGCCTGTTCCATCTCTGGCGCCCTCGTCGGAGCCCAC
AGCGCAGCCCACGGCGCAGCCTTCTCTGGCGCCGTCCCCGGCGCCATCAC
CGCAGCCGACGGCGGAACCTTCTCCCGCCCCTTCGCCCGCGCCGTCGCCG
GCTCCTACGCCAGTACCCACGCCGAAGCCGACGTCAGCTGAAACGCCGGC
GCCCACGGTGGCTGAGACGCCGGCTCCGACTGAGGAAGATACACCTGCTC
CGACACTCGCGCTGGCGCCGTCGCCTAACCCCACCACGGAGGCCACGCCT
GCACCGACGCTGGCGCAAGAAGATACGCCCTCGCCGACTCCGGCGCCGTC
AGAGGCGTCTCCGGCGCCGTCAGAGGCGTCTCCGACGCCGGCCCCCTCGG
CCACGCCGGCACCGACGACTCTCGTGGTGGCGGCGGGAGTCAAGGGAAGC
GGCTTTGTCTCGCCGGGCACCGACATTGGCTGCGCTTCGACGGACGAGCT
GTGTGCGACGGAGCTGAGCGAGGGCGTCGCTGCCGGCTTCAGTGTATCGA
CAGATGAAGTGGCCGTGGAGGACGTGGCGGTCGTCAGCGGCCGCCGCCGC
TGCGCCGACCGCCGCCGGGAACTGCTTGGTGTCGGCGGCGCTCCGGCTCT
CAAGGGAACTACGGCGCAGGAAGTGCCCGGCGCTCTCTACAACGGCATTA
ATGGCGGCGGCGATCACACCAGTGGCGGCGGCGGGTTACGAAAGCTCGCC
GCTGCGGCCACTGGTAGCGGCGGCGGCACCGGCGTCGCCAGGAACGGCCT
TGACAGCGGCCGCCGGTCGCTGCAGGAGACGGGAGACTTAGTCTTTTCAT
TCGTCGTCACGCTGACGGACGACAGCGCCACTGAGGCGCAGCAGGCGGCA
GACCTAATCGAAACCGCCGTAACCGACCTTGTTGCGTCGCTGGCGTCATC
GCTGGCGCTGGAGGCAGGCACGGTCGCCCTGGGTCAGTTCTATTACCAGG
GGAAGGGGGTCGCACTGGACCCGTTATCGGTTACGCTCCTCGGCAACGGC
TCTACGAGCGTCGAGGTGGCCTATACGGGTGCGGACGTCAGCGGCAGCGG
CGGCGCGACGTCCGTAACCGGCTATGACGTAACGGCCAAGAGCATCGCGC
TCTGCATCGTGTTCGTCTGCCTGCTGGCCGTCGGGACCGTCGCAGTCTGC
TCCGGAACAATTGTGCTCATGCTCCGGAACCGCGACGGACCCCTCAAGGA
CATGAAGAAGGTTGGAGTCGAAAAGCACCTCGAGGAGTGGCCCGCCATGT
CGATGGACGAAGCCGGTGGCGCGGCGGCCGCCGGCGTCGCCGCCGAAGCC
GCTGCCGGCATCACCGGCTCTGGCGATGCCAGCAACCGGAACAGCTACAC
GTACGATACGCATTCCATCACGCTCGACGTGGCGGACCTCTATCAAGACG
GCGAAGGCGCCGGCGATGCCGGTGGCAGCGGCGGCGCCCCCGTCAAGGCG
TGGGATAGCGACTCGGCATCGGGTTCCGACAGACGTGCAGTGGCGGCCGC
AGCGGCGACGCGCGTCGCCCGGAACAGCGGCGGCCGGAATCGCAGCGGCA
GCAATCTGGTCCCGCTCTCCATGCGGTCGCCGGCGCCGGCGGGCGAGGAG
GCGGCGCCGACCATGTCTGCCTACCTAAGCAGCTCCGGCGTCTCGGACTA
CGAACGATACTCGCAAGTCTTAGCGAGACGGAAAGTCGCCTTTGCGGCCG
ACGGGTCCCTGCCCCAAGCCAGCCCGGTGTCGGCGTCGATGGCTGCTGCC
GGCGGCGCCACCACGACCGCCGCCGCCGTCCCC
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