mRNA_P-wetherbeei_contig8678.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8678.1.1
Unique NamemRNA_P-wetherbeei_contig8678.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: A0A835YSU7_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSU7_9STRA)

HSP 1 Score: 277 bits (709), Expect = 9.790e-84
Identity = 137/248 (55.24%), Postives = 168/248 (67.74%), Query Frame = 1
Query:    1 AARMWEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGD------------------NDTLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAY-----------------RLAASVLTANTTAKLQVSGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLVDSL 639
            AA  W  + +WRRE  VD VL   QP F I+KECYPHFLHGR+R G ++CYENPG+MDFGRL + GV PD LQRHYCFVN+YIW RLSPGD                  +D LMTVLDV GL +STLK NTVMHRY+ A+AEVMQ HYP+RQ+RI+I+NAPWWFA A+                    A VL+ANTT+KLQ+ GT++L AL + + + QIP +YGG SP+ LG+A EE G+A L  +L
Sbjct:  246 AAAKWSASCEWRRERRVDEVLTVPQPVFTIMKECYPHFLHGRARDGGVVCYENPGRMDFGRLAAAGVTPDDLQRHYCFVNEYIWQRLSPGDXXXXXXXXXXXXXXXXXXDDQLMTVLDVNGLGMSTLKNNTVMHRYMRASAEVMQAHYPDRQARIVIINAPWWFAGAWLDCIXXXXXXXXXXXXXHSFAGVLSANTTSKLQICGTDYLAALRKLIPDDQIPSDYGGSSPHKLGDADEERGLAELAAAL 493          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: D7FZM4_ECTSI (CRAL-TRIO domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FZM4_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 9.250e-75
Identity = 119/215 (55.35%), Postives = 154/215 (71.63%), Query Frame = 1
Query:    1 AARMWEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDT--LMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQVSGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLVDSL 639
            A  MW+ET++WR +   +  L   QP  +IIK+CYP+F+HGRS+ GE++ YE  GKM FGRL   GV P  +Q HY F ND+++ +L+  D+D   LMTVLDVG L L+T+K NTV+ +YLAATAEVMQKHYPERQSRI++VNAPWWFA  ++  + VL++ T AKLQ+ G NFLP LL+ VD  QIP EYGG SP  LGE+ +E  +  L  SL
Sbjct:  221 AKAMWDETVKWRTDTGAERSLSTPQPTLDIIKQCYPYFVHGRSKKGEVVVYEQTGKMQFGRLADAGVSPFDMQMHYAFFNDFVFSKLNDEDDDDAKLMTVLDVGELRLATIKNNTVVTKYLAATAEVMQKHYPERQSRILVVNAPWWFAGIWKGVSGVLSSGTQAKLQIRGKNFLPTLLEHVDASQIPSEYGGDSPQALGESTDEMALCRLAASL 435          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: A0A485K5A0_9STRA (Aste57867_436 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5A0_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.170e-44
Identity = 80/209 (38.28%), Postives = 119/209 (56.94%), Query Frame = 1
Query:   13 WEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDTLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQV-SGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLVDS 636
            WE T QWRRENN+D +L E QP+F+IIK+ YP + HG+S+ G  + YE  G +DF  L   G+  D+L RHY F+ +++W  L P D+   +TVLDV       L G+     ++         HYPER ++I+++N P WF   +R  + ++   T AK+++ + +     LL  +D  Q+P  YGG S   LGE+ EE  +A  V S
Sbjct:   47 WEATRQWRRENNIDGLLHEPQPHFDIIKKNYPQYFHGKSKNGHCVYYERLGYVDFKTLKKSGLNMDQLLRHYMFITEFLWKVLEPSDSGRSITVLDVENFGFYDLTGDVTS--FIRQAMAFAAAHYPERSAQIIVINVPGWFYMTWRAMSPMIDPVTKAKIRICNSSTSRDELLAAIDLDQLPSNYGGTS-CALGESDEEKRLAQHVQS 252          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: A0A7R9U9K9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9K9_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.950e-41
Identity = 77/214 (35.98%), Postives = 119/214 (55.61%), Query Frame = 1
Query:    1 AARMWEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDT-LMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQVSGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLVDSL 639
            A++ +  T  WR E+ +D VL   +P F+ +K  +PHFLHGRSR G ++ YE  G +D GRL + G+    L  H  F+ +YI+  L     D  ++ V DV G+++ +LKG  +   +L  + +VMQ HYPER   + I+NAP+WF SA+R+   ++   T A++++ G NF   L  ++     P EY      PLG  P+E  +   V  L
Sbjct:  142 ASQRFAATQLWREEHELDRVLSTPRPTFDKVKRLFPHFLHGRSRKGNVVRYERLGDIDAGRLAASGLSAVDLTNHLVFLAEYIFSHLDAHRPDAKVLVVCDVKGISIGSLKGEILS--FLQMSTQVMQAHYPERMESMFIINAPFWFTSAWRVVGVLMAPQTRARIKILGANFQDELAAYIPPNGAPFEYVDGGGLPLGRDPQELSLLDFVRGL 353          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: A0A4D9CRJ4_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRJ4_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.130e-40
Identity = 82/207 (39.61%), Postives = 123/207 (59.42%), Query Frame = 1
Query:   22 TMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRL---SPGDND-TLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQVSGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLV 630
            ++ WR    VD +LR   P+F  IKE YPH++HGR R GE++ +E PG+MD G L   G+G  ++ RHY + N++++  L     G++D   MTVLD+GGL L++L  + +    L  T+ +M  HYP R  RI +VN P+    A+RL ASVL      K++VS    +  LL+++    +P E+GG SP  LG++ EE  +  LV
Sbjct:  379 SLAWRAREGVDGILRRPHPDFAAIKEHYPHYVHGRGRGGELVVFEQPGRMDLGALRKRGIGAAEIGRHYVYFNEFLYRALRREGEGEDDGRAMTVLDIGGLGLTSLTPDVL--EVLRTTSHLMHAHYPGRVLRICVVNVPFLVGGAWRLLASVLPQAVQEKIEVSAQPSVD-LLKYIAPENLPSEFGGTSPMGLGDSAEEKKLRALV 582          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: A0A7S3XUI5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUI5_HETAK)

HSP 1 Score: 149 bits (375), Expect = 4.970e-40
Identity = 77/220 (35.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query:    1 AARMWEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDTLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQVSGT-NFLPALLQFVDEVQIPREYGGQSPYPLG-------EAPEEAGIAGLVDS 636
            A R W+ T +WRR+  +D++L + QP +++IK+ YPHF  G +R+G ++ YE  GK+D     + G   D L  HY F+ ++ W  L P      ++VLD+ G++L+  +G      ++  +A ++Q+HYPE    +++VN P WFA  ++LA  ++   T  K+++ G  + L AL +F+D+ QIP EYGG + +  G       + P EA IA  VD+
Sbjct:   45 ARRRWDITYRWRRKEEIDALLLKPQPFYHVIKKGYPHFYCGYARSGNLVYYEQSGKVDLSEAEAAGATLDDLVAHYTFLAEFCWRVLDPSAAGKTVSVLDLAGISLAFCRGRAF--EFVKRSAALLQEHYPECCQVMLVVNVPSWFALVWKLAKPLVNEVTLKKIRIVGAADTLSALQEFIDDDQIPAEYGGTAVFGDGAPDAFRFQNPLEAQIAAYVDA 262          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: F0WTS4_9STRA (SEC14 cytosolic factor putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WTS4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.060e-38
Identity = 76/199 (38.19%), Postives = 113/199 (56.78%), Query Frame = 1
Query:   19 ETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDTLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQV--SGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEE 609
            +T+ WR+EN+VD +LR    NF  IK+CYP + HGRS+ G  + YE PGK+D   L  LG+  + L  HY ++ +++W  + P D    +TVLDV G+ +S+L G  +   ++   +     HYPER + I I+N P WF   +R+   ++   T  K+ +     + L  L Q +D  QIP EYGGQ   PLG + EE
Sbjct:  474 QTLSWRKENDVDQILRRPHRNFENIKKCYPQYFHGRSKAGNPVYYEKPGKIDLLVLKQLGLSIEDLIYHYMYITEFLWTYIEPDDAARSITVLDVSGIGMSSLGGEVL--DFIKRASTFTAAHYPERSAHIFIINIPGWFNMIWRIVKPLIDPVTREKVHMLKGRGSILRELKQLIDIDQIPEEYGGQGA-PLGMSAEE 669          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: A0A7S1UMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMG2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.620e-38
Identity = 85/227 (37.44%), Postives = 121/227 (53.30%), Query Frame = 1
Query:    1 AARMWEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLS------------PGD----NDTLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQVSGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLVD 633
            A  M+++T  WR+EN +  V R   P ++ IK+ YPHF+HG S+ G  I YE PGKM        G G   + RH  F+ +YI   +S            PG+    N   M V+D+ G ++STL G+ +   YLA   +V   HYP    R  +VN+PWW A A+    S+L  +    + +S +  + AL +F+D+ QIP+EYGG S Y LGE P E G+  L D
Sbjct:  384 ARAMYQKTQAWRQENAIWKVHRTPHPFYHQIKKAYPHFIHGHSKCGMTIVYEQPGKMSLKEFFRNGGGVPDMVRHCWFLMEYIANCVSTRKELVNARGDEPGEPLSANWGTMIVMDISGASVSTLSGDVLA--YLAKAGDVNNNHYPMAMKRAFLVNSPWWLAGAFSGFRSILPESVKVDI-LSESQSVTALRKFIDDNQIPKEYGGSSQYALGEHPYEVGLKDLAD 607          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: K3X232_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X232_GLOUD)

HSP 1 Score: 149 bits (377), Expect = 3.710e-38
Identity = 74/208 (35.58%), Postives = 117/208 (56.25%), Query Frame = 1
Query:   13 WEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDTLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQV-SGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLVD 633
            ++ T+QWR+EN++D++L    P F  IK+ YP + HGRS+ G+ + YE PGK+D   L   G+  + L RHY ++ +Y+W  + P D    +TVLDV G+ +  L G  +   ++   +     HYPER + I I+N P WF   +R+   ++   T  K+ +  G+  L  L   +D   IPR+ GG+ P  LGE+ EE  +A  V+
Sbjct:  532 YQNTLQWRKENDIDNILVTPHPTFETIKKYYPQYFHGRSKAGQPVYYERPGKIDLAALKREGLSIEDLLRHYMYITEYLWRVIEPSDMGRSLTVLDVTGIGMYDLGGEVL--DFIKRASSFTGAHYPERSAHIFIINIPGWFNMIWRMVKPMIDPVTREKVHMLKGSAILRELEMLIDIENIPRDLGGKGP-SLGESEEEIELAAHVN 736          
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Match: A0A7S2YQ43_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQ43_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.910e-38
Identity = 71/211 (33.65%), Postives = 113/211 (53.55%), Query Frame = 1
Query:    7 RMWEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYENPGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDTLMTVLDVGGLTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLAASVLTANTTAKLQV--SGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEEAGIAGLVD 633
            R ++ T+ WRREN +D++LRE  P+F  IK+ YPHF HG+   GE   YE P +     + + GV  + + RHY  V +Y W  L   D    + ++D+ G+  S   G+ V   ++   + +  +HYPER  ++ ++N P WF   + +    +   T  K+ +          + + +    IP+EYGGQSPYPLG++PEE   A LV+
Sbjct:   99 RRYKATLDWRRENQIDTILRESSPHFATIKKYYPHFCHGQGYNGEPCYYEQPPRTKLKAMQNEGVSIETVLRHYVMVTEYQWQYLIRDDLKRSIYIIDLEGMGFSDFVGDVV--DFVKRASALSSQHYPERAGQVFVINVPGWFKMVWNVVKPWVDEVTLKKIHILRDKEEIRRCMEERIPAHNIPQEYGGQSPYPLGQSPEEVEFAQLVE 307          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8678.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSU7_9STRA9.790e-8455.24CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
D7FZM4_ECTSI9.250e-7555.35CRAL-TRIO domain-containing protein n=3 Tax=Ectoca... [more]
A0A485K5A0_9STRA3.170e-4438.28Aste57867_436 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A7R9U9K9_9STRA4.950e-4135.98Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A4D9CRJ4_9STRA1.130e-4039.61CRAL-TRIO domain-containing protein n=1 Tax=Nannoc... [more]
A0A7S3XUI5_HETAK4.970e-4035.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
F0WTS4_9STRA1.060e-3838.19SEC14 cytosolic factor putative n=1 Tax=Albugo lai... [more]
A0A7S1UMG2_9STRA1.620e-3837.44Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
K3X232_GLOUD3.710e-3835.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2YQ43_9STRA3.910e-3833.65Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8678contigP-wetherbeei_contig8678:403..2176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZM4
PFAMsCRAL_TRIO
Model size639
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.35e-75
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size630
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8678.1.1prot_P-wetherbeei_contig8678.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8678 403..2167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187053.7446473-CDS-P-wetherbeei_contig8678:402..4891683187053.7446473-CDS-P-wetherbeei_contig8678:402..489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8678 403..489 -
1683187053.7541635-CDS-P-wetherbeei_contig8678:726..9481683187053.7541635-CDS-P-wetherbeei_contig8678:726..948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8678 727..948 -
1683187053.76379-CDS-P-wetherbeei_contig8678:1134..12431683187053.76379-CDS-P-wetherbeei_contig8678:1134..1243Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8678 1135..1243 -
1683187053.7772505-CDS-P-wetherbeei_contig8678:1451..15411683187053.7772505-CDS-P-wetherbeei_contig8678:1451..1541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8678 1452..1541 -
1683187053.7879438-CDS-P-wetherbeei_contig8678:1727..18021683187053.7879438-CDS-P-wetherbeei_contig8678:1727..1802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8678 1728..1802 -
1683187053.8008406-CDS-P-wetherbeei_contig8678:2120..21671683187053.8008406-CDS-P-wetherbeei_contig8678:2120..2167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8678 2121..2167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187053.8126915-UTR-P-wetherbeei_contig8678:2167..21761683187053.8126915-UTR-P-wetherbeei_contig8678:2167..2176Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8678 2168..2176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8678.1.1

>prot_P-wetherbeei_contig8678.1.1 ID=prot_P-wetherbeei_contig8678.1.1|Name=mRNA_P-wetherbeei_contig8678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MWEETMQWRRENNVDSVLREQQPNFNIIKECYPHFLHGRSRTGEIICYEN
PGKMDFGRLNSLGVGPDKLQRHYCFVNDYIWGRLSPGDNDTLMTVLDVGG
LTLSTLKGNTVMHRYLAATAEVMQKHYPERQSRIMIVNAPWWFASAYRLA
ASVLTANTTAKLQVSGTNFLPALLQFVDEVQIPREYGGQSPYPLGEAPEE
AGIAGLVDSL
back to top

mRNA from alignment at P-wetherbeei_contig8678:403..2176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8678.1.1 ID=mRNA_P-wetherbeei_contig8678.1.1|Name=mRNA_P-wetherbeei_contig8678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1774bp|location=Sequence derived from alignment at P-wetherbeei_contig8678:403..2176- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCCGCATGTGGGAGGAGACGATGCAGTGGCGACGAGAGAACAATGT GGACAGGTGAGGGGAAAGGAAGTGAGAAATTTCTCAATTTTTTCTGAAAT GGATAAGAATTCCGCAGAAAGATGTCTCTTTGAAGATTTTGCGCTTGGCG GAAATCATGAATTTCATATGGTGCGAAGATGTTTCACTTCGCGAAAATCC GCTGGTTCTTTCTCTACTTCTGACTTTTGCATTGAGGCGGCTGCAGCCTC GCTATGTCATTGTATGCCGTTGCTGCGGAAGAAAACTAGGCATGTGGTGA AAGTATGCGGGTTCCTCGTTCTGTCCACTCTGCCAATTTTGGACTACTGG ACGCTGTTCACGTCCCATCCGCAGCGTCCTGCGGGAGCAGCAGCCCAACT TTAATATAATAAAGGAATGCTACCCGCACTTCCTCCACGGGCGCAGCAGG TGAGCCCGGCGCTTTTGCTGGCAGGAGATGGCAGACGAAATGTAATGCCT TTTGCTGCTTTAAGAGCCTTTGATATAAGTCCCAAAAGAGCAGTTGCTAG CGCCATGATCCTAACCACGACGAAAGGACCTGCTGCCATATTCGGATGCT CCTGCTGTGCCCGCTGCCTGTTATCCTTATGGCAGAACCGGGGAGATCAT TTGCTACGAGAACCCCGGAAAGATGGACTTTGGGCGGCTCAACAGCCTTG GCGTGGGACCGGACAAACTCCAAAGGTGCGCCGGACTGCACAAGGTCTGA GGAAGGAATTTCTGTTAGCCATGCTTGACGACAATAACACCGTTCGTTTC CAGAAGTTGGAGCAGCTGAAGACCTCATAGGATGATACTGTGTTGGGGGC TGCCTGTCTGGTCCTTGCGGCTCATTTACCGCGTGACCTGCGGCCGCCTT TGTCGTCGCCGCTGCCACCGCCGTCTTCGCCAGGCATTACTGCTTTGTAA ACGACTACATCTGGGGGCGTCTGTCGCCGGGCGACAACGACACGCTCATG ACGGTGCTTGACGTCGGAGGGCTCACACTTTCCACGCTTAAAGTCAGTCG GCGCATGAAAACGGCCAGAATCCACTTCTTTCGAATGCACAGGGCAAAGG ACGAATCGCACATGTATTCCTTTGGAAGCTTATGCATGCTCCTTTGGAAG CTTGGTCCACACGTCGCCGCCCGCACCGGCTCCTACTGCCGCGCGCCGCT GCCGCCGCCCGCCGCTGCCGCCATACAGGGCAACACGGTGATGCACCGCT ACCTGGCTGCGACGGCTGAGGTGATGCAGAAGCACTACCCGGAGCGACAG AGTCGCATCATGATCGTCAACGCGCCGTGGTGGTTCGCGTCGGCATATCG GCTGGCCGCCAGCGTGCTGACGGCTAACACGACGGCCAAGCTGCAGGTGT CGGGCACCAACTTCCTGCCGGCGCTGCTCCAGTTTGTTGACGAAGTGCAG GTGGGCAAGAAGGGTGTTGCGTGCAGGAGCGGCAGAAAAGAGAGAAGAAA GGTTTGAAAAGTTGAGACTTAACAGCGTGCTGTTCCGTCTTTCTGGGCTT TCTGTCCGTCTCCTCTCTTTTTTACTTTGCTCTGGTTGCCAGCCAGCATC AGCCTCTTGCTCCAACCTTCGACTCGTGCTTGTGCCCGCTCTCATATGTT ACTTCGGAAACACGGCCGTGCGGCGATCTGCTTGCAGATCCCGCGTGAGT ACGGAGGGCAGAGCCCCTACCCGCTGGGAGAAGCCCCGGAGGAAGCCGGG ATTGCCGGGCTGGTGGACAGCCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8678:403..2176-

>mRNA_P-wetherbeei_contig8678.1.1 ID=mRNA_P-wetherbeei_contig8678.1.1|Name=mRNA_P-wetherbeei_contig8678.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig8678:403..2176- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGAGGAGACGATGCAGTGGCGACGAGAGAACAATGTGGACAGCGT
CCTGCGGGAGCAGCAGCCCAACTTTAATATAATAAAGGAATGCTACCCGC
ACTTCCTCCACGGGCGCAGCAGAACCGGGGAGATCATTTGCTACGAGAAC
CCCGGAAAGATGGACTTTGGGCGGCTCAACAGCCTTGGCGTGGGACCGGA
CAAACTCCAAAGGCATTACTGCTTTGTAAACGACTACATCTGGGGGCGTC
TGTCGCCGGGCGACAACGACACGCTCATGACGGTGCTTGACGTCGGAGGG
CTCACACTTTCCACGCTTAAAGGCAACACGGTGATGCACCGCTACCTGGC
TGCGACGGCTGAGGTGATGCAGAAGCACTACCCGGAGCGACAGAGTCGCA
TCATGATCGTCAACGCGCCGTGGTGGTTCGCGTCGGCATATCGGCTGGCC
GCCAGCGTGCTGACGGCTAACACGACGGCCAAGCTGCAGGTGTCGGGCAC
CAACTTCCTGCCGGCGCTGCTCCAGTTTGTTGACGAAGTGCAGATCCCGC
GTGAGTACGGAGGGCAGAGCCCCTACCCGCTGGGAGAAGCCCCGGAGGAA
GCCGGGATTGCCGGGCTGGTGGACAGCCTG
back to top