mRNA_P-wetherbeei_contig8660.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8660.1.1
Unique NamemRNA_P-wetherbeei_contig8660.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A835YT30_9STRA (DEP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT30_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.140e-14
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 1 
Query:    1 PYLYRFAEDEFFRVR-EQVEYFSSMTYFHCIKIAQQMRHELPLKSRERRGRMLPLCFHGIGAVAWMRTTGV-----------------------AAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPEDETALI 348
            PY+YRFAEDE+ R+  E V     M Y   +++AQ+MR E+ +   E+ G++   CF G+    W+   G+                       A+   +AVA+GNAL+RAGL+HHV  R   +ASR+LYRF  D  ALI
Sbjct:   96 PYMYRFAEDEWVRIGGEAVACAEHMPYRKLMQLAQRMRREMGVGDIEQEGKVYQRCFTGVMCTGWLMHVGLVDAEQKGSRTSEHPRCAAAAATSASAAQDAVALGNALVRAGLVHHVARRRPLEASRRLYRFAADALALI 235
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A150GGG8_GONPE (DEP domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GGG8_GONPE)

HSP 1 Score: 66.2 bits (160), Expect = 2.560e-8
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   91 KIAQQMRHELPLKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPEDE 336
            ++A  +R  L ++ R    R    CF G  AVAWM   G AA  A+AVA+G+A++RAGLLHHV   H F+ +   YRF ED+
Sbjct:    9 RLAAALRAGLDIRDRRYLLRTYRRCFVGRDAVAWMLAAGAAAGPAQAVALGDAMLRAGLLHHVLYEHGFEDALLFYRFAEDD 90
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A835W5K2_CHLIN (DEP domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W5K2_CHLIN)

HSP 1 Score: 65.5 bits (158), Expect = 5.020e-8
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   61 FSSMTYFHCIKIAQQMRHELPLKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPEDETA 342
            F+S+     +++A  +R  + +K R    R    CF G  AVAW+   G AA  AEAVA+GN++M AGL HHV   H F+     YRF +D+ A
Sbjct:   16 FASLPQPDLLQLAAALRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDDDYA 109
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A0D2L6I7_9CHLO (Phosphatidylinositol3,4, 5-trisphosphate-dependent Rac exchanger 1 protein (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2L6I7_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 1.250e-7
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:   49 QVEYFSSMTYFHCIKIAQQMRHELP--LKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPEDE 336
            Q ++   M     ++I++ MR  L   +K R  R R    CF G   V W+  +G AA D +AVA+GNA+++AGLL HV   H F+ ++ LY+F  D+
Sbjct:    7 QQQFVMEMPMEELVEISEAMRDGLQGRIKDRTHRLRTYRRCFPGAAGVRWLVESGHAAGDEQAVALGNAMLQAGLLRHVAYEHTFKNTQLLYKFTSDD 104
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A2K3DW24_CHLRE (DEP domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DW24_CHLRE)

HSP 1 Score: 63.9 bits (154), Expect = 1.610e-7
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   88 IKIAQQMRHELPLKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPED 333
            +++A  MR  + +K R    R    CF G  AVAW+   G AA  AEAVA+GN++M AGL HHV   H F+     YRF +D
Sbjct:   10 LQLATAMRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDD 91
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A835WVW9_9CHLO (DEP domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WVW9_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 2.880e-7
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   88 IKIAQQMRHELPLKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPEDE 336
            +++A  +R  + +K R    R    CF G  AVAW+   G AA  AEAVA+GN++M AGL HHV   H F+     YRF +D+
Sbjct:   10 LQLAAALRRGVRVKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGAAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDDD 92
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A0D2K7Z7_9CHLO (Phosphatidylinositol3,4, 5-trisphosphate-dependent Rac exchanger 2 protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2K7Z7_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 3.370e-7
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  124 LKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPEDETA 342
            +K R  R R    CF G   VAW+   G AA    AVA+GNA+++AGLLHHV   H F+ S  LY+F  D+ A
Sbjct:   32 IKDRTHRLRSYKRCFPGSAGVAWLVANGHAADADGAVALGNAMLQAGLLHHVAYEHTFKDSELLYKFTADDEA 104
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A2V0PEE8_9CHLO (DEP domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PEE8_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.070e-5
Identity = 36/86 (41.86%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   91 KIAQQMRHELP--LKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQLYRFPEDETA 342
            ++A  MR  L   +K R  R R    CF G   V W+   G A  +A AVA+GNA+++AGLLHHV     F+ S  LY+F  D+ A
Sbjct:   15 ELALSMRDGLAPSIKDRTHRLRTYRRCFPGSEGVKWLVRGGHAPDEASAVALGNAMLQAGLLHHVAYERTFKGSDLLYKFAADDDA 100
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BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Match: A0A2V0PFC7_9CHLO (DEP domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PFC7_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 4.550e-5
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  124 LKSRERRGRMLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQASRQL-YRFP-EDETALIRERKEQHRRRRESLSRRASDVGGAASELVMG 441
            +K R  R R    CF G     W+ + G AA +A AVA+GNAL++AGL+HHV     F++S  L Y+F  +D++  + +           LSR  S VG A S   +G
Sbjct:   33 IKDRTHRLRSYKRCFTGTAGARWLVSAGRAADEAAAVALGNALLQAGLIHHVSYDKTFKSSDSLLYKFTADDDSGAVGD-----------LSRAQSQVGSARSLPALG 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8660.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YT30_9STRA4.140e-1437.86DEP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A150GGG8_GONPE2.560e-845.12DEP domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A835W5K2_CHLIN5.020e-840.43DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A0D2L6I7_9CHLO1.250e-737.76Phosphatidylinositol3,4, 5-trisphosphate-dependent... [more]
A0A2K3DW24_CHLRE1.610e-743.90DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A835WVW9_9CHLO2.880e-742.17DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A0D2K7Z7_9CHLO3.370e-746.58Phosphatidylinositol3,4, 5-trisphosphate-dependent... [more]
A0A2V0PEE8_9CHLO1.070e-541.86DEP domain-containing protein n=1 Tax=Raphidocelis... [more]
A0A2V0PFC7_9CHLO4.550e-537.04DEP domain-containing protein n=1 Tax=Raphidocelis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8660contigP-wetherbeei_contig8660:347..2224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog248742.XP_005651731.1
PFAMsDEP
Model size971
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.3e-08
EggNOG OGs2CZJM@1|root,2SAPD@2759|Eukaryota,380J0@33090|Viridiplantae,34M9E@3041|Chlorophyta
DescriptionDomain found in Dishevelled, Egl-10, and Pleckstrin
Cds size969
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187052.8690808-CDS-P-wetherbeei_contig8660:346..10151683187052.8690808-CDS-P-wetherbeei_contig8660:346..1015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8660 347..1015 -
1683187052.8814092-CDS-P-wetherbeei_contig8660:1368..14641683187052.8814092-CDS-P-wetherbeei_contig8660:1368..1464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8660 1369..1464 -
1683187052.891827-CDS-P-wetherbeei_contig8660:1807..19071683187052.891827-CDS-P-wetherbeei_contig8660:1807..1907Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8660 1808..1907 -
1683187052.9021907-CDS-P-wetherbeei_contig8660:2120..22241683187052.9021907-CDS-P-wetherbeei_contig8660:2120..2224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8660 2121..2224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8660.1.1prot_P-wetherbeei_contig8660.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8660 347..2224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8660.1.1

>prot_P-wetherbeei_contig8660.1.1 ID=prot_P-wetherbeei_contig8660.1.1|Name=mRNA_P-wetherbeei_contig8660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
PYLYRFAEDEFFRVREQVEYFSSMTYFHCIKIAQQMRHELPLKSRERRGR
MLPLCFHGIGAVAWMRTTGVAAHDAEAVAIGNALMRAGLLHHVGLRHAFQ
ASRQLYRFPEDETALIRERKEQHRRRRESLSRRASDVGGAASELVMGLRR
LSSAGLTGSFGGVGTTGSGGGDDGGNGCGGSGDADGDKPIGAAGAGRNGR
SGRRSGHGKRPSGGFGRYGFGGGGGDGGYSDLGGDGSDGESGGESYEGRF
STWRGSARRKRLLRPSSLPWLTLERPPRAGISAVTDPGNGGGGQNVGGAR
TGTGGGGESSTAGSGPSDPTATA
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mRNA from alignment at P-wetherbeei_contig8660:347..2224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8660.1.1 ID=mRNA_P-wetherbeei_contig8660.1.1|Name=mRNA_P-wetherbeei_contig8660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1878bp|location=Sequence derived from alignment at P-wetherbeei_contig8660:347..2224- (Phaeothamnion wetherbeei SAG_119_79)
CCGTACCTCTACCGGTTCGCTGAGGACGAGTTCTTCCGGGTGCGCGAGCA
GGTGGAATACTTCAGTAGCATGACATACTTCCACTGCATAAAGATCGCCC
AACAGTGAGTCCAGCGGGAGCAGTTCCTGTTTTCCCCCCCTGGTCTGCCT
TCTCTTTCTTATTTTTTCTGTAGTTGCCTGCACAAGTTTGAAGTCTTGTT
TCTTTGCTCCATCTCTCAATGGCTCAAGCTGATGCCATTGTCTTCCTGTT
GTGCATAGGCATTCTTTAAACTGTACAAACCTGACACTTCGCGAAACCGT
CATTATCCATCGCGCAGAATGCGCCATGAGCTGCCGCTGAAGAGCAGGGA
GCGGCGGGGGCGCATGCTGCCGCTCTGCTTCCACGGAATCGGCGCCGTCG
CCTGGATGCGGACCACCGTACGTGCACCTGTTTGTTCTTTGCTCTCTTTC
TGAACGTTTCACAGACGCACTTCGGTTTTCTGGAATAGTGAGCGGAGGTT
TTCATGGTTTTAATTATTGCAGCAGGGTAGCGTCGCAGAGAACAGCCATG
TCATTCTCCCTTCTTCGTTATAGGCGCTCAAAGAACGGAATCGTTGCACT
GAACTGCGTTTCTTTCACGTTCTTCCATCTCAAACATTAATGAATAGGTC
CTTTTACGCTTGCTGGACGCTTTCACTGCTCTCTCCGTCCGCTTCCTTCA
CGTTGAACCCAATTCCGCCCCGCGCGTATTGCTGGTCGGCGTTTCCCTTG
GTTTTTGCAGGGCGTGGCGGCGCACGACGCCGAGGCAGTAGCAATCGGCA
ATGCGCTGATGCGGGCGGGATTGCTGCACCACGTCGGGTTGCGACACGCT
TTCCAGGTGTGTTTATACTACAAATTCTCTCCGTGTCCATTGCAGATCGT
ATCCAAACCTTTGCAATGCAATTCGATGCGGAATGCTCTGTGTAAGGCAT
TCAGAGGTCGGACGCGGCTTGCTACCTCAGTGGGGCGTTGGTTCGACCGC
TGTCAACCGCCATTCCTTCTTCGATGATGGGCATTCGCCATCTCCTTCTA
GTATTCTTGAAGGCCCGCATTTCAGCTAAGCGCAATCCTCTCAAGGGCTC
CTTGAACACCCGACTGGTTCTAGAACCCTTTGTGCGTTGCTTTATGCCCT
CCTGTTCCCTCTTTCCTTCCCGATTACATTCAACTTCTGCATCTTTCTTC
CGCAAACAGGCGTCGCGGCAGCTCTACCGCTTCCCTGAGGACGAGACGGC
GCTCATTCGCGAGCGGAAGGAGCAGCACCGCCGCCGCCGCGAGTCGCTCT
CCCGCCGCGCCAGCGACGTCGGTGGCGCCGCCTCGGAGCTGGTCATGGGC
CTGCGCCGGCTGTCCTCTGCCGGTCTCACCGGCAGCTTCGGCGGCGTCGG
CACTACCGGAAGTGGTGGAGGTGACGACGGTGGTAATGGCTGCGGTGGCA
GCGGCGATGCCGATGGTGACAAACCAATCGGAGCCGCGGGCGCCGGCCGG
AACGGCAGGTCGGGGCGCCGCAGCGGGCATGGCAAGCGGCCGAGCGGCGG
TTTCGGCCGTTACGGCTTCGGCGGGGGCGGCGGCGACGGCGGGTACAGCG
ACCTCGGAGGGGATGGCTCGGACGGCGAGAGCGGCGGCGAGAGCTACGAA
GGACGCTTTTCCACCTGGCGCGGGTCCGCCAGACGAAAGCGCCTGTTACG
GCCTTCCTCCCTGCCGTGGCTGACGCTAGAAAGACCGCCGCGAGCGGGCA
TCAGCGCCGTCACTGATCCCGGCAATGGCGGCGGTGGCCAGAATGTTGGC
GGCGCCAGAACCGGCACTGGCGGCGGCGGCGAAAGCAGCACAGCCGGCAG
CGGGCCATCCGATCCGACCGCGACTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8660:347..2224-

>mRNA_P-wetherbeei_contig8660.1.1 ID=mRNA_P-wetherbeei_contig8660.1.1|Name=mRNA_P-wetherbeei_contig8660.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig8660:347..2224- (Phaeothamnion wetherbeei SAG_119_79)
CCGTACCTCTACCGGTTCGCTGAGGACGAGTTCTTCCGGGTGCGCGAGCA
GGTGGAATACTTCAGTAGCATGACATACTTCCACTGCATAAAGATCGCCC
AACAAATGCGCCATGAGCTGCCGCTGAAGAGCAGGGAGCGGCGGGGGCGC
ATGCTGCCGCTCTGCTTCCACGGAATCGGCGCCGTCGCCTGGATGCGGAC
CACCGGCGTGGCGGCGCACGACGCCGAGGCAGTAGCAATCGGCAATGCGC
TGATGCGGGCGGGATTGCTGCACCACGTCGGGTTGCGACACGCTTTCCAG
GCGTCGCGGCAGCTCTACCGCTTCCCTGAGGACGAGACGGCGCTCATTCG
CGAGCGGAAGGAGCAGCACCGCCGCCGCCGCGAGTCGCTCTCCCGCCGCG
CCAGCGACGTCGGTGGCGCCGCCTCGGAGCTGGTCATGGGCCTGCGCCGG
CTGTCCTCTGCCGGTCTCACCGGCAGCTTCGGCGGCGTCGGCACTACCGG
AAGTGGTGGAGGTGACGACGGTGGTAATGGCTGCGGTGGCAGCGGCGATG
CCGATGGTGACAAACCAATCGGAGCCGCGGGCGCCGGCCGGAACGGCAGG
TCGGGGCGCCGCAGCGGGCATGGCAAGCGGCCGAGCGGCGGTTTCGGCCG
TTACGGCTTCGGCGGGGGCGGCGGCGACGGCGGGTACAGCGACCTCGGAG
GGGATGGCTCGGACGGCGAGAGCGGCGGCGAGAGCTACGAAGGACGCTTT
TCCACCTGGCGCGGGTCCGCCAGACGAAAGCGCCTGTTACGGCCTTCCTC
CCTGCCGTGGCTGACGCTAGAAAGACCGCCGCGAGCGGGCATCAGCGCCG
TCACTGATCCCGGCAATGGCGGCGGTGGCCAGAATGTTGGCGGCGCCAGA
ACCGGCACTGGCGGCGGCGGCGAAAGCAGCACAGCCGGCAGCGGGCCATC
CGATCCGACCGCGACTGCC
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