mRNA_P-wetherbeei_contig8643.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8643.1.1
Unique NamemRNA_P-wetherbeei_contig8643.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8643.1.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.490e-11
Identity = 43/85 (50.59%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:  567 GRTGGPKKNLVAAVVRRHTIFMLGEFWTSKICPGGCGGEMVDVQGEFRVRRCNKETAIKGLNSAAVCPRFSLGAGSPGVAFTCDR 821
            G    P+K LV A+  R  + ML EF TSK+CPGGCGGEM DVQG  RVR+C   T   G+ +   CP F  G     VAF CDR
Sbjct: 1216 GHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCT--TVCVGVENP--CPLFENG-----VAFRCDR 1291
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BLAST of mRNA_P-wetherbeei_contig8643.1.1 vs. uniprot
Match: Q8QNA9_ESV1K (EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K)

HSP 1 Score: 71.2 bits (173), Expect = 2.760e-9
Identity = 41/85 (48.24%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:  567 GRTGGPKKNLVAAVVRRHTIFMLGEFWTSKICPGGCGGEMVDVQGEFRVRRCNKETAIKGLNSAAVCPRFSLGAGSPGVAFTCDR 821
            G    P+K LV A+  R  + ML EF TSK+CPGGCGGEM DVQG  RVR+C   T   G+ +   CP F        VAF  DR
Sbjct:  589 GHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCT--TVSVGVENP--CPLFENA-----VAFRYDR 664
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BLAST of mRNA_P-wetherbeei_contig8643.1.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.590e-6
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:  567 GRTGGPKKNLVAAVVRRHTIFMLGEFWTSKICPGGCGGEMVDVQGEFRVR 716
            G    P+K LV A+  R  + ML EF TSK+CPGGCGGEM DVQG+ + R
Sbjct: 1428 GHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGDCKAR 1477
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BLAST of mRNA_P-wetherbeei_contig8643.1.1 vs. uniprot
Match: A0A6H5KSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-5
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:  582 PKKNLVAAVVRRHTIFMLGEFWTSKICPGGCGGEMVDVQG 701
            P+K LV A+  R  + ML EF TSK+CPGGCGGEM DVQG
Sbjct:  307 PRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQG 346
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8643.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L4M4_9PHAE2.490e-1150.59Resolvase/invertase-type recombinase catalytic dom... [more]
Q8QNA9_ESV1K2.760e-948.24EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K[more]
A0A6H5JVT4_9PHAE1.590e-656.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSF5_9PHAE1.720e-565.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8643contigP-wetherbeei_contig8643:1088..2746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1659
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187051.6919188-UTR-P-wetherbeei_contig8643:1087..19221683187051.6919188-UTR-P-wetherbeei_contig8643:1087..1922Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8643 1088..1922 -
1683187051.724219-UTR-P-wetherbeei_contig8643:2276..27461683187051.724219-UTR-P-wetherbeei_contig8643:2276..2746Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8643 2277..2746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187051.7086873-CDS-P-wetherbeei_contig8643:1922..22761683187051.7086873-CDS-P-wetherbeei_contig8643:1922..2276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8643 1923..2276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8643.1.1prot_P-wetherbeei_contig8643.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8643 1923..2276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8643.1.1

>prot_P-wetherbeei_contig8643.1.1 ID=prot_P-wetherbeei_contig8643.1.1|Name=mRNA_P-wetherbeei_contig8643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MQQSGGDGAATGGADAGAQRRRRGIRRCALPGGRTGGPKKNLVAAVVRRH
TIFMLGEFWTSKICPGGCGGEMVDVQGEFRVRRCNKETAIKGLNSAAVCP
RFSLGAGSPGVAFTCDR*
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mRNA from alignment at P-wetherbeei_contig8643:1088..2746-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8643.1.1 ID=mRNA_P-wetherbeei_contig8643.1.1|Name=mRNA_P-wetherbeei_contig8643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1659bp|location=Sequence derived from alignment at P-wetherbeei_contig8643:1088..2746- (Phaeothamnion wetherbeei SAG_119_79)
CTACAACTTTGCCGACCACGGACCGGTGGACGCCGTCAGAGAAGAGCGCG
ACGTTTACACGATGCGGGAGGATCGCGTCGACTATGTGCGAGGCCTGCCT
GTGGTGGCCGACGCCGCGCTCGTCGTCGTCGACCCGGGCGTCAAGGGTGT
ATTGTGTGCCAACATACTTACGTATCAGCATGAAGGGGACCCCATCTCCG
TCGTCAACAACAGCGAGGACGTCTGGACCGTGAGCGGCGACGAGTACCCC
AAGGCGGCCGGCGCAGGCATCAAGGCGACGCGTGACTGGAACGCCGTGAC
CGCAAGAGCGGCTGCTACAGCAGGGTCATCGCGCAGCTCTCGCCGGCGCG
GAAAAGGATGGTGCGGCTGGAGCCGTTCCTGACGGTGCTCGCCGACGCCT
AGCCTATTCCACGCTGCAGCGGGAGCTGTGCACCCGCGGCCGCCGCAAGA
CGCGCGTGCTGGTGTCGCGAATGCAACAGAGTGGAGGAGACGGCGCAGCG
ACTGGTGGCGCCGACGCGGGGGCCCAGCGGCGGCGTCGAGGCATTCGGCG
ATGCGCGCTTCCAGGTGGGAGGACCGGCGGGCCGAAGAAGAACCTGGTGG
CGGCGGTGGTGCGACGGCACACGATTTTCATGCTCGGGGAGTTCTGGACG
TCGAAGATATGCCCGGGCGGCTGCGGCGGGGAGATGGTGGACGTCCAGGG
GGAATTCAGGGTTCGACGATGCAACAAAGAAACCGCGATAAAAGGCCTGA
ACTCCGCTGCCGTGTGCCCACGCTTCAGCCTCGGCGCTGGCAGTCCCGGC
GTCGCCTTCACCTGCGACCGGTGACGAGAGCGCTACCGTGAACATGCTGC
TGTGCGTGAGGCGCTGCCTCGACGGAGCGCGGTGGCCGCACCATCTCAGG
AGGAGCGGTGATGGCGGCGGCGGCGGACTTGAAGATGGCTATGGTGGAGA
AGGCGGCAGCTTCCCTGCAGCCGCTACGGGCGGCGCAGGCGGCATGGTGG
GCGGAGCGGGCGCTGCAAGCGGCGGCGACGGAGCGCGCGGCGGGTATGTT
AGTTAACAGATAGTGCCACCCCAGTTTTCGGCCTGGGGACACCAGTGTCC
GGCTGTCCCCGGACGAGAAGGATGGAGGAGTGACGGACGGGCCATTGCAG
GCAACCGGCTGTAGCGATCCGCTCGCTCGCCGCGACAGCAATCGGGGAGG
GCAGCGAGGCGGTGGTGGGGGCCGAGAGCATTCGTGGAAATGACCGGGCG
ATACATTCCACCAGCACCTCTGTTTTTCTTTCAGTGCCCAGCTTTCTTGG
CTGAGCGGAGGATTGGGGTGTGATCGCCCCCTGCCGGTGCTGCCAGCGCA
AGTGCCGACACTACCTTCAGGGTGGTGCTTGCACGCCCTGTTGTGCAATG
CTGCGAGTTTCTAGCGTGCAGATGGGATGGCGGAAGCAAAATGTTGGCAA
AAGAGGCTTTGCGAGTCATGCGACAAAAACCGAGGGCAGTGTAGGGAGAG
GAACAATGCTAGTTCCGTCTCCTTTTCGAAGTAAGTTCCTGTTCAAAGCG
AAATGACGGCTGCACAGCAGTGCACAGCAGAGGTCGTCCCTCAACCCAGA
AGGCCAAACCCTTCCATTTCGACTTACGTACCGGTTCGACAGGCGATGCA
GTCCTTGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8643:1088..2746-

>mRNA_P-wetherbeei_contig8643.1.1 ID=mRNA_P-wetherbeei_contig8643.1.1|Name=mRNA_P-wetherbeei_contig8643.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig8643:1088..2746- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACAGAGTGGAGGAGACGGCGCAGCGACTGGTGGCGCCGACGCGGG
GGCCCAGCGGCGGCGTCGAGGCATTCGGCGATGCGCGCTTCCAGGTGGGA
GGACCGGCGGGCCGAAGAAGAACCTGGTGGCGGCGGTGGTGCGACGGCAC
ACGATTTTCATGCTCGGGGAGTTCTGGACGTCGAAGATATGCCCGGGCGG
CTGCGGCGGGGAGATGGTGGACGTCCAGGGGGAATTCAGGGTTCGACGAT
GCAACAAAGAAACCGCGATAAAAGGCCTGAACTCCGCTGCCGTGTGCCCA
CGCTTCAGCCTCGGCGCTGGCAGTCCCGGCGTCGCCTTCACCTGCGACCG
GTGA
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