mRNA_P-wetherbeei_contig8635.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8635.2.1
Unique NamemRNA_P-wetherbeei_contig8635.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: D8LNX2_ECTSI (Protein phosphatase 2C containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX2_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 2.170e-96
Identity = 152/265 (57.36%), Postives = 190/265 (71.70%), Query Frame = 1
Query:   10 RLFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACGVDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAMVDDITCCVVRL 804
            RLF VLDGHGE GHLV+RRC + LP  + ++    AR    +  DL +C VDC+ SGATCV+  +R  +++VANLGDS+CVL R    G + AVPL+ DHKPDRPDER RI+A+GGQVGSR L+VG+   G +R+P+GPARVWY+ RGE MGLAMSRSLGD +AH+AGVS+EPEV E  ID +D+FL+LATDGVWDV ++GQAVQIV G A+R                      AAS++ H+ARK+WE  SA+VDDIT  VVRL
Sbjct:   28 RLFVVLDGHGELGHLVSRRCSAKLPNLVVDSNLCVARATLRMADDLRSCPVDCASSGATCVLTTIRDGKISVANLGDSKCVLARLV-NGQVCAVPLSHDHKPDRPDERQRILAIGGQVGSRHLVVGSNPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVKEHQIDANDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGNSWDPQG------------AASLLAHSARKRWEGLSAVVDDITALVVRL 279          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A835YTT3_9STRA (Phosphatase 2C-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT3_9STRA)

HSP 1 Score: 279 bits (713), Expect = 9.200e-90
Identity = 157/287 (54.70%), Postives = 184/287 (64.11%), Query Frame = 1
Query:   10 RLFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAA-CGVDCSCSGATCVIAVLRGN-RLTVANLGDSRCVLGRAAAGGG------------------IAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEH--DRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAMVDDITCCVVRL 804
            R+FAVLDGHGE+GHLV RRC   LP+ +     + AR C ALH DLA+   VDC CSGATCV+  +     +TVANLGDSRCVLGR   GG                   + AVPLT+DHKPDRPDER+RI A GGQVGSRQL+VG+G  G +R+P+GPARVWYQ RGETMGLAMSRS+GD +AH AGVSA+PEV E  +D    D FL+LA+DGVWDVLD   AV IV  CAA A                     AA      ARK+W+  S M+DDIT  VV+L
Sbjct:   81 RVFAVLDGHGEAGHLVTRRCRERLPQLLRAARGDAARACVALHEDLASGVHVDCQCSGATCVVVTISARGAVTVANLGDSRCVLGRWECGGXXXXXXXXXXXMVGRAQRQVCAVPLTTDHKPDRPDERARIQAAGGQVGSRQLIVGSGPAGPIRIPMGPARVWYQVRGETMGLAMSRSIGDVIAHAAGVSAQPEVVEHCLDRDAGDAFLVLASDGVWDVLDAQAAVHIVAACAAAAGGAEWDPRE------------AAXXXXXAARKRWDGLSPMIDDITALVVKL 355          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A482S1K4_9ARCH (Protein serine/threonine phosphatase 2C family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1K4_9ARCH)

HSP 1 Score: 273 bits (698), Expect = 1.920e-86
Identity = 140/265 (52.83%), Postives = 177/265 (66.79%), Query Frame = 1
Query:   10 RLFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACGVDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAMVDDITCCVVRL 804
            R++ VLDGHGE GH+V++RC    P F+  T          +  DL +  +D  CSGATCVIA +  NRLTV N GDSR VLGR +A G IAA PL++DHKPD+P+ER RI+  GG +G RQ+LV  G  G V +PVGP RVWYQ RGET+GLAMSRSLGD++ H+ GV+AEPE+TE  ID+HD F++LATDGVWDV+D   AVQ+V G A+R+                     A++ VC  AR +WE  S MVDDITC VV++
Sbjct:  184 RVYCVLDGHGEHGHIVSKRCRENFPHFLKSTNWQVEAAFNMMQNDLTSSEIDVRCSGATCVIACVSNNRLTVYNCGDSRAVLGRRSASGAIAAYPLSNDHKPDKPEERKRILGCGGHLGCRQVLVNQGNRGPVSMPVGPCRVWYQHRGETLGLAMSRSLGDSIVHKVGVTAEPELTEHQIDDHDEFIILATDGVWDVVDNNHAVQMVFGVASRSVNWSVLE--------------ASNAVCRFARSRWEKLSPMVDDITCVVVKI 434          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A7S4D964_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D964_HETAK)

HSP 1 Score: 266 bits (681), Expect = 1.540e-85
Identity = 143/265 (53.96%), Postives = 178/265 (67.17%), Query Frame = 1
Query:   13 LFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLA-ACGVDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAMVDDITCCVVRL 804
            +F VLDGHG+ GHLV+ +C   LP+   ETG + +RTC A+ A+L  +  +D  CSGATCVI V+ G RLTV NLGDS+ VLGR   G  +   PLT+DHKPDRPDER RI+  GG+VG RQL+VG G  G VR+P+GP R+WYQ RGETMGLAMSRSLGD + H  GVSA+PE+TE L+D  D FLLL +DG+WDV D+ QAVQIV G   +                      AA  +  +AR++WE+ S MVDDIT  VV+L
Sbjct:   59 MFCVLDGHGQQGHLVSTQCRERLPQLYRETGNDLSRTCLAMQAELEKSTAMDVKCSGATCVICVVEGRRLTVGNLGDSKAVLGRRVNGVTLPH-PLTNDHKPDRPDERQRILQAGGKVGCRQLVVGNGPNGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDGIVHALGVSADPELTEHLLDGEDLFLLLGSDGIWDVTDLNQAVQIVQGVVNK-------------NPHGWDPREAAEELAVSARRRWESMSQMVDDITAIVVKL 309          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A7S2WTT9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT9_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.090e-76
Identity = 140/263 (53.23%), Postives = 170/263 (64.64%), Query Frame = 1
Query:   16 FAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACGVDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAMVDDITCCVVRL 804
            + V DGHGE GHLV+R     L K   E   N +R    + ++L    VD  CSGATCV+ VLRGN + V N GDSR VLGR +  G I+A+ LTSDHKPDRPDER R++  GGQVGSRQL+VG    G V +P+GP RVWYQ RGETMGLAMSRSLGD +AH  GVS+EPEVTE  +   D F++LA+DG+WDV++  QAVQIV    ARA                     AA ++  TAR++WE+ S MVDDIT  VV L
Sbjct:  179 WGVFDGHGEFGHLVSRIIRERLGKIWLECSQNFSRAFWQMQSELDKSSVDARCSGATCVMVVLRGNTIQVGNCGDSRAVLGRRS-NGTISALQLTSDHKPDRPDERRRVMQAGGQVGSRQLVVGHNANGPVTLPLGPPRVWYQIRGETMGLAMSRSLGDGIAHSNGVSSEPEVTEHAVSSTDVFVILASDGIWDVIETNQAVQIVGNHFARATASGSTQWDVVD---------AAMVLTTTARRRWESLSPMVDDITAVVVDL 431          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A7S1U9X7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9X7_9STRA)

HSP 1 Score: 240 bits (613), Expect = 5.730e-72
Identity = 139/285 (48.77%), Postives = 166/285 (58.25%), Query Frame = 1
Query:   13 LFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACGVDCSCSGATCVIAVL------RG--NRLTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXX-------------AASMVCHTARKKWEAASAMVDDITCCVVRL 804
            LFAV DGHGE GHLV+R+C   +P+ +     +             +C VDCSCSGAT V+ ++      RG  + L + N GDSR V+ R      I  V LT DHKPDRPDER RI AMGG+VG+RQ++VG G  GA+ +PVGPAR+WY  RGETMGLAMSRSLGD +AHR G S EPE+T R + E D FLLLATDGVWDVLD   AV I       A                                  AA  +C TAR++WE  SAMVDDITC VV+L
Sbjct:  316 LFAVFDGHGEFGHLVSRKCREEMPQRLISNRLDMGAAFDEAQDHFKSCEVDCSCSGATAVVIIIDNATRGRGGSSTLRIGNCGDSRAVVARVV-NNTITGVTLTKDHKPDRPDERRRITAMGGKVGTRQVVVGHGPNGAITMPVGPARIWYNCRGETMGLAMSRSLGDLIAHRVGGSHEPEMTMRNLQEEDMFLLLATDGVWDVLDANAAVDIAFEVMMEAREEAGLGPKRVPMGGAAAGFSSEEWRSIPWDPEVAAKRICTTARRRWENLSAMVDDITCVVVKL 599          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A7S3ZZR6_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZR6_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.550e-70
Identity = 131/268 (48.88%), Postives = 168/268 (62.69%), Query Frame = 1
Query:   10 RLFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACGVDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQ---ARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAMVDDITCCVVRL 804
            R + VLDGHGE GHLV++RC   L +   ++  + +     +  DL+ C +D  CSGATCV   L  + L VAN+GDSR VLG    G  I A PLTSDHKPDR DE+ RIVA GGQV  RQL+VG  + G + +P+GP RVWY+   + G+TMGLAMSRS GDA+AH  GVS EPE+T+  +D  D+FL+ ATDGVWDV+D  QAV+IVH    R+                     AA  +C +AR +W++ S M+DDIT  VV L
Sbjct:  158 RCYGVLDGHGEIGHLVSKRCSQQLCEHFVKSQLDMSLAFRLMQEDLSQCELDIKCSGATCVFVHLHDSYLRVANIGDSRGVLGHLD-GANICATPLTSDHKPDRHDEQIRIVACGGQVSCRQLVVGHSSNGPITLPLGPPRVWYRRNSSHGDTMGLAMSRSFGDAIAHGLGVSCEPEITQYNLDLADKFLICATDGVWDVIDNAQAVKIVHTLYERSNDWDPLE--------------AAHTLCISARNRWQSLSPMIDDITALVVDL 410          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A7S2CMF9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMF9_9STRA)

HSP 1 Score: 217 bits (553), Expect = 2.080e-64
Identity = 128/272 (47.06%), Postives = 164/272 (60.29%), Query Frame = 1
Query:    1 SHARLFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACGVDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAA-AGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVH---GCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAMVDDITCCVVRL 804
            SH   + V DGHG+ GHLV++     + K   +       T  ++   L    VD   SG+TCV+ VL  + L VAN GDSR VLG+   +   +A + LT DHKPDRPDER R+   GGQVG RQ+L+  G+  +VRVP+GPARVWY  RGET GLAMSRSLGDA+ H  GVS EPEVT+R +D+ +RF+++ATDG+WDVL     VQIV      AAR+                     AA ++C TAR++WE  S MVDDIT  V+ L
Sbjct:  197 SHRHTWIVFDGHGDRGHLVSKFGREKMGKTWIDNKFRLRETFLSMQQQLNKSSVDVRSSGSTCVMVVLDNDCLKVANCGDSRAVLGKVVNSSSQLATIVLTDDHKPDRPDERMRVEKAGGQVGCRQMLMNRGS--SVRVPLGPARVWYTNRGETTGLAMSRSLGDAIVHTFGVSEEPEVTQRTLDKTERFIIVATDGIWDVLHSSHVVQIVDKHFNEAARSNSPWNPQD-------------AAMVLCLTARRRWEGMSTMVDDITAVVIDL 453          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A7S2XVV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 5.900e-57
Identity = 101/179 (56.42%), Postives = 126/179 (70.39%), Query Frame = 1
Query:   16 FAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACG-VDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLI 549
            + VLDGHG+ GHLV+      L +  +E G + +R C  +  DL     +D  CSGATCVIA+LRG  L V NLGDSRCVL R    G ++ V L++DHKPDRPDER RI+A GG+VG RQL+VG G  G VR+P+GP R+WYQ RGETMGLAMSRSLGD++ H  GVSA+PE+ E  +
Sbjct:  116 YCVLDGHGQQGHLVSGYIRENLVRHYSECGQDVSRACLRMQEDLDTTPTLDTKCSGATCVIAILRGRSLLVGNLGDSRCVLARRV-NGVLSPVALSNDHKPDRPDERQRILAAGGKVGCRQLVVGNGPSGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDSIVHTQGVSADPELKEHQV 293          
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Match: A0A7S2NWU1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWU1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.680e-50
Identity = 97/266 (36.47%), Postives = 148/266 (55.64%), Query Frame = 1
Query:   13 LFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLAACGVDCSCSGATCVIAVLRGNR-LTVANLGDSRCVLGRAAAGGGIAAVPLTSDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQARGETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDVLDVGQAVQIVHGCAARAXXXXXXXXXXXXXXXXXXXXXAASMVCHTARKKWEAASAM-VDDITCCVVRL 804
            ++ V DGHG  GH+V++ C ++LPK +AETG +  R  + L +DL +  +D  CSG TCV A+++ NR + V N+GDSR ++ + +    + A+PL+ DHKP + DER RI+  GG++ S+    G            P+RVW++    TMGLAMSRS+GD  AHR GVS EP++    I+  D  ++LA+DG+WDV    +   ++  C                         AA  +   AR +WE  S   +DD+TC V+++
Sbjct:  123 VYMVFDGHGRFGHVVSKHCKAVLPKILAETGYDQERAISVLQSDLESSAIDIECSGCTCVTAIVKQNRTIEVGNVGDSRAIILQRSPNNTLKALPLSIDHKPSQLDERKRILETGGRIASKHCSAG------------PSRVWFEYNNTTMGLAMSRSVGDEFAHRVGVSHEPQIFHHKIEPQDTCIVLASDGLWDVYSNDEVAHLIQTCI-------------NGNYADWNAKIAAVFLTKMARMRWEHISTEHIDDVTCLVIKI 363          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8635.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX2_ECTSI2.170e-9657.36Protein phosphatase 2C containing protein n=1 Tax=... [more]
A0A835YTT3_9STRA9.200e-9054.70Phosphatase 2C-containing protein n=1 Tax=Tribonem... [more]
A0A482S1K4_9ARCH1.920e-8652.83Protein serine/threonine phosphatase 2C family pro... [more]
A0A7S4D964_HETAK1.540e-8553.96Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2WTT9_9STRA1.090e-7653.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1U9X7_9STRA5.730e-7248.77Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3ZZR6_9STRA1.550e-7048.88Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]
A0A7S2CMF9_9STRA2.080e-6447.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XVV9_9STRA5.900e-5756.42Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2NWU1_9STRA1.680e-5036.47Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8635contigP-wetherbeei_contig8635:1812..2717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNX2
PFAMsPP2C,Pkinase,cNMP_binding
Model size804
Max annot lvl2759|Eukaryota
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.56e-97
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size804
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187051.2409887-CDS-P-wetherbeei_contig8635:1811..19031683187051.2409887-CDS-P-wetherbeei_contig8635:1811..1903Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8635 1812..1903 -
1683187051.263557-CDS-P-wetherbeei_contig8635:2005..27171683187051.263557-CDS-P-wetherbeei_contig8635:2005..2717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8635 2006..2717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8635.2.1prot_P-wetherbeei_contig8635.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8635 1812..2717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8635.2.1

>prot_P-wetherbeei_contig8635.2.1 ID=prot_P-wetherbeei_contig8635.2.1|Name=mRNA_P-wetherbeei_contig8635.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
SHARLFAVLDGHGESGHLVARRCVSLLPKFMAETGCNPARTCAALHADLA
ACGVDCSCSGATCVIAVLRGNRLTVANLGDSRCVLGRAAAGGGIAAVPLT
SDHKPDRPDERSRIVAMGGQVGSRQLLVGTGTGGAVRVPVGPARVWYQAR
GETMGLAMSRSLGDAVAHRAGVSAEPEVTERLIDEHDRFLLLATDGVWDV
LDVGQAVQIVHGCAARAAAAAAAAGGGNGGGYGGDGGEAASMVCHTARKK
WEAASAMVDDITCCVVRL
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mRNA from alignment at P-wetherbeei_contig8635:1812..2717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8635.2.1 ID=mRNA_P-wetherbeei_contig8635.2.1|Name=mRNA_P-wetherbeei_contig8635.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=906bp|location=Sequence derived from alignment at P-wetherbeei_contig8635:1812..2717- (Phaeothamnion wetherbeei SAG_119_79)
TCCCACGCGCGCCTCTTCGCCGTCCTCGACGGGCACGGCGAGTCTGGCCA CCTCGTGGCCCGCCGCTGCGTCAGCCTCCTGCCCAAGTTCATGGCGGAAA CGGGCTGCAACCCGGCCAGGACGTGCGCGGCGCTGCATGCCGATCTGGCG GCCTGCGGCGTCGACTGCTCATGCAGCGGCGCCACGTGCGTCATTGCCGT GCTGCGCGGAAACCGTCTGACCGTCGCCAACCTCGGCGACTCGCGCTGCG TCCTCGGCCGCGCGGCGGCTGGCGGTGGCATCGCCGCTGTGCCGCTGACG AGCGACCACAAGCCGGACCGCCCGGACGAGCGGAGTCGGATCGTCGCGAT GGGCGGGCAAGTCGGCAGCCGGCAGCTGCTGGTCGGGACGGGCACCGGTG GCGCGGTGCGGGTACCGGTGGGGCCGGCCCGCGTCTGGTACCAGGCGCGC GGCGAGACCATGGGGCTCGCTATGAGCCGCAGCCTGGGTGACGCCGTCGC GCACCGGGCGGGGGTCAGTGCCGAGCCCGAGGTGACGGAGCGGCTCATCG ACGAGCACGACCGCTTCCTGCTGCTGGCGACGGACGGCGTGTGGGATGTT TTAGACGTTGGCCAGGCCGTGCAGATTGTGCATGGCTGTGCCGCACGGGC AGCAGCAGCAGCAGCGGCAGCTGGCGGCGGCAATGGCGGTGGCTATGGCG GCGACGGCGGCGGTAATGGCGGGGGCAATGGCGGTGGTGGCAACAGTGGT GATAACGGCATGTTTGGCGTCGGGGACGGTGGGGGGATGACGGGAATGGT GTGGGATCCCCAAGAGGCGGCGAGCATGGTGTGTCACACCGCCCGAAAGA AGTGGGAGGCGGCGTCCGCCATGGTGGACGATATTACCTGCTGTGTTGTG CGACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8635:1812..2717-

>mRNA_P-wetherbeei_contig8635.2.1 ID=mRNA_P-wetherbeei_contig8635.2.1|Name=mRNA_P-wetherbeei_contig8635.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig8635:1812..2717- (Phaeothamnion wetherbeei SAG_119_79)
TCCCACGCGCGCCTCTTCGCCGTCCTCGACGGGCACGGCGAGTCTGGCCA
CCTCGTGGCCCGCCGCTGCGTCAGCCTCCTGCCCAAGTTCATGGCGGAAA
CGGGCTGCAACCCGGCCAGGACGTGCGCGGCGCTGCATGCCGATCTGGCG
GCCTGCGGCGTCGACTGCTCATGCAGCGGCGCCACGTGCGTCATTGCCGT
GCTGCGCGGAAACCGTCTGACCGTCGCCAACCTCGGCGACTCGCGCTGCG
TCCTCGGCCGCGCGGCGGCTGGCGGTGGCATCGCCGCTGTGCCGCTGACG
AGCGACCACAAGCCGGACCGCCCGGACGAGCGGAGTCGGATCGTCGCGAT
GGGCGGGCAAGTCGGCAGCCGGCAGCTGCTGGTCGGGACGGGCACCGGTG
GCGCGGTGCGGGTACCGGTGGGGCCGGCCCGCGTCTGGTACCAGGCGCGC
GGCGAGACCATGGGGCTCGCTATGAGCCGCAGCCTGGGTGACGCCGTCGC
GCACCGGGCGGGGGTCAGTGCCGAGCCCGAGGTGACGGAGCGGCTCATCG
ACGAGCACGACCGCTTCCTGCTGCTGGCGACGGACGGCGTGTGGGATGTT
TTAGACGTTGGCCAGGCCGTGCAGATTGTGCATGGCTGTGCCGCACGGGC
AGCAGCAGCAGCAGCGGCAGCTGGCGGCGGCAATGGCGGTGGCTATGGCG
GCGACGGCGGCGAGGCGGCGAGCATGGTGTGTCACACCGCCCGAAAGAAG
TGGGAGGCGGCGTCCGCCATGGTGGACGATATTACCTGCTGTGTTGTGCG
ACTG
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