mRNA_P-wetherbeei_contig861.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig861.3.1
Unique NamemRNA_P-wetherbeei_contig861.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig861.3.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.600e-18
Identity = 110/359 (30.64%), Postives = 138/359 (38.44%), Query Frame = 1 
Query:   58 ALSGPLLRRRGVLRPLAAALAQWHLLSGTGLPAATTAAAVVATPGRAAGEQGWATVPVILLQALKTAISSCSTLRLALEEAATREAAVSARRNVHESSGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEATVEETT---AELNRVMTLLCFLAGKAAGVLVSGGVGRCDGGEVPNDIAAAQHAEARSLPLPSAGNGEATIGNG------------GGSGDARPPS-----VGPGPRAAEFEWLRSPLLANGLLPLPPSPPTAPESTPVAAAVAVPAEGKAERQQQRKVPALLSSAGTVATAAAPKGQQMLDFLRDLVENREGTPAATLAAWAKRYSGENPVLARLGGPLIDRSVR 1074
            AL  PLLR  G+L P+ A+LAQWHL+                       E+G   + + L +ALK  +    +L+ AL +                                                    E   +ET      LNR+  +L  LAGK  G L+SGG+G  DGGE PND+ A   A+ R      A                           A  PS      G G  A E  WL+SPLLANG++       TAP     AAA A  A G            +    G +  A A   Q    FLRDLVE   G+PA  L+ W  ++ GENPVLAR GGPLI R VR
Sbjct: 2501 ALQHPLLRGGGLLSPILASLAQWHLVDNP--------------------EEG---LGLDLTEALKATLREADSLKRALGQ----------------------------------------------------EILTDETKRCMVGLNRLQVVLACLAGKLLGALISGGIGSLDGGEAPNDLHAEVEADVRRRAEGGAXXXXXXXXXXRXXXXXXXXXXXXXXXXAAAPSRATRVTGAGGSAGEQGWLQSPLLANGIV-------TAP-----AAAAAAGAVGSGRGGGALAAGMVDDGNGGMGPAGAGPIQA---FLRDLVEGVPGSPALALSQWVSKHVGENPVLARTGGPLIARGVR 2769
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BLAST of mRNA_P-wetherbeei_contig861.3.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.080e-17
Identity = 108/363 (29.75%), Postives = 138/363 (38.02%), Query Frame = 1 
Query:   58 ALSGPLLRRRGVLRPLAAALAQWHLLSGTGLPAATTAAAVVATPGRAAGEQGWATVPVILLQALKTAISSCSTLRLALEEAATREAAVSARRNVHESSGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEATVEETT---AELNRVMTLLCFLAGKAAGVLVSGGVGRCDGGEVPNDIAAAQHAEARSLPLPSAGNGEATIGNGGGSGDARPPS-----------------VGPGPRAAEFEWLRSPLLANGLLPLPPSPPTAPESTPVAAAVAVPAEGKAERQQQRKVPALLSSAGTVATA---AAPKGQQMLD-FLRDLVENREGTPAATLAAWAKRYSGENPVLARLGGPLIDRSVR 1074
            AL  PLLR  G+L P+ A+LAQWHL+                       E+G   + + L +ALK  +    +L+ AL +                                                    E   +ET      LNR+  +L  LAGK  G L+SGG+G  DGGE PND+ A   A+ R      A                                      G G RA E  WL+SPLLANG++       TAP +   A AV    +G A              AG V        P G   ++ FLRDLVE   G+PA  L+ W  ++ GENPVLAR GGPLI R VR
Sbjct: 2701 ALQHPLLREGGLLSPILASLAQWHLVDNP--------------------EEG---LGLDLTEALKATLREVDSLKRALGQ----------------------------------------------------EILTDETKRCMVGLNRLQVVLACLAGKLLGALISGGIGSLDGGEAPNDLHAEVEADVRRRAEGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTATRVTGVGGRAGEQGWLQSPLLANGIV-------TAPAA---AGAVGSGRDGGA------------LGAGMVDDGNGGMGPAGAGPIEAFLRDLVEGVPGSPAFALSQWVSKHVGENPVLARTGGPLIARGVR 2966
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig861.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI1.600e-1830.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE3.080e-1729.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig861contigP-wetherbeei_contig861:4606..5679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCZ5
PFAMsRCC1
Model size1076
Max annot lvl2759|Eukaryota
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.62e-19
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
Cds size1074
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.8309035-CDS-P-wetherbeei_contig861:4605..56791683187049.8309035-CDS-P-wetherbeei_contig861:4605..5679Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig861 4606..5679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig861.3.1prot_P-wetherbeei_contig861.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig861 4606..5679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig861.3.1

>prot_P-wetherbeei_contig861.3.1 ID=prot_P-wetherbeei_contig861.3.1|Name=mRNA_P-wetherbeei_contig861.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=358bp
MDAAVSATSADAVAKAAATALSGPLLRRRGVLRPLAAALAQWHLLSGTGL
PAATTAAAVVATPGRAAGEQGWATVPVILLQALKTAISSCSTLRLALEEA
ATREAAVSARRNVHESSGDGGGGHGGAGAGDGGGDGGSGGDGSGGGSAGH
KEATVEETTAELNRVMTLLCFLAGKAAGVLVSGGVGRCDGGEVPNDIAAA
QHAEARSLPLPSAGNGEATIGNGGGSGDARPPSVGPGPRAAEFEWLRSPL
LANGLLPLPPSPPTAPESTPVAAAVAVPAEGKAERQQQRKVPALLSSAGT
VATAAAPKGQQMLDFLRDLVENREGTPAATLAAWAKRYSGENPVLARLGG
PLIDRSVR
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mRNA from alignment at P-wetherbeei_contig861:4606..5679+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig861.3.1 ID=mRNA_P-wetherbeei_contig861.3.1|Name=mRNA_P-wetherbeei_contig861.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig861:4606..5679+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCGGCGGTGTCGGCGACTTCGGCGGACGCCGTGGCTAAGGCGGC
GGCGACGGCGCTCTCGGGCCCACTGCTGCGGCGGCGCGGCGTGCTGCGCC
CGCTTGCGGCGGCGCTGGCGCAGTGGCACCTGCTGTCCGGCACCGGCCTA
CCAGCTGCGACCACTGCGGCGGCAGTTGTGGCGACTCCAGGGCGGGCCGC
CGGTGAACAAGGGTGGGCGACGGTGCCGGTCATCTTGCTGCAGGCGCTGA
AAACGGCCATCTCATCCTGCAGCACCCTGCGGCTCGCTTTGGAGGAGGCT
GCTACACGGGAGGCCGCCGTCTCAGCGCGAAGGAACGTGCACGAGAGCAG
CGGCGATGGAGGAGGAGGACACGGCGGCGCTGGCGCTGGCGACGGCGGCG
GCGACGGCGGCAGCGGGGGTGACGGTAGCGGTGGCGGCAGCGCCGGACAT
AAGGAGGCGACGGTGGAGGAAACAACGGCGGAGCTGAACCGCGTGATGAC
CCTGCTGTGTTTCCTGGCGGGCAAGGCGGCCGGCGTGCTCGTCAGCGGCG
GTGTGGGGCGGTGCGATGGCGGCGAGGTGCCCAATGACATTGCGGCGGCG
CAGCACGCCGAAGCGCGCTCGCTCCCGCTTCCATCGGCAGGAAATGGCGA
GGCAACGATTGGAAATGGTGGCGGTAGCGGCGACGCCCGTCCGCCTTCCG
TCGGACCTGGGCCGCGGGCGGCAGAATTCGAGTGGTTGCGGTCTCCGCTT
CTCGCCAATGGCTTGCTGCCGCTGCCGCCGTCGCCGCCGACAGCGCCCGA
GTCGACGCCGGTTGCCGCAGCGGTGGCTGTACCCGCAGAAGGAAAAGCGG
AACGGCAGCAGCAGCGGAAGGTGCCAGCGCTGCTGTCTTCGGCCGGAACG
GTTGCGACTGCGGCGGCGCCCAAGGGCCAGCAGATGTTGGATTTCCTCCG
CGATCTGGTCGAGAACAGGGAGGGCACGCCGGCCGCGACTCTCGCGGCGT
GGGCGAAGCGCTATTCCGGCGAGAACCCCGTGCTGGCGCGGCTTGGCGGC
CCGCTGATTGACCGCAGCGTCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig861:4606..5679+

>mRNA_P-wetherbeei_contig861.3.1 ID=mRNA_P-wetherbeei_contig861.3.1|Name=mRNA_P-wetherbeei_contig861.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig861:4606..5679+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCGGCGGTGTCGGCGACTTCGGCGGACGCCGTGGCTAAGGCGGC
GGCGACGGCGCTCTCGGGCCCACTGCTGCGGCGGCGCGGCGTGCTGCGCC
CGCTTGCGGCGGCGCTGGCGCAGTGGCACCTGCTGTCCGGCACCGGCCTA
CCAGCTGCGACCACTGCGGCGGCAGTTGTGGCGACTCCAGGGCGGGCCGC
CGGTGAACAAGGGTGGGCGACGGTGCCGGTCATCTTGCTGCAGGCGCTGA
AAACGGCCATCTCATCCTGCAGCACCCTGCGGCTCGCTTTGGAGGAGGCT
GCTACACGGGAGGCCGCCGTCTCAGCGCGAAGGAACGTGCACGAGAGCAG
CGGCGATGGAGGAGGAGGACACGGCGGCGCTGGCGCTGGCGACGGCGGCG
GCGACGGCGGCAGCGGGGGTGACGGTAGCGGTGGCGGCAGCGCCGGACAT
AAGGAGGCGACGGTGGAGGAAACAACGGCGGAGCTGAACCGCGTGATGAC
CCTGCTGTGTTTCCTGGCGGGCAAGGCGGCCGGCGTGCTCGTCAGCGGCG
GTGTGGGGCGGTGCGATGGCGGCGAGGTGCCCAATGACATTGCGGCGGCG
CAGCACGCCGAAGCGCGCTCGCTCCCGCTTCCATCGGCAGGAAATGGCGA
GGCAACGATTGGAAATGGTGGCGGTAGCGGCGACGCCCGTCCGCCTTCCG
TCGGACCTGGGCCGCGGGCGGCAGAATTCGAGTGGTTGCGGTCTCCGCTT
CTCGCCAATGGCTTGCTGCCGCTGCCGCCGTCGCCGCCGACAGCGCCCGA
GTCGACGCCGGTTGCCGCAGCGGTGGCTGTACCCGCAGAAGGAAAAGCGG
AACGGCAGCAGCAGCGGAAGGTGCCAGCGCTGCTGTCTTCGGCCGGAACG
GTTGCGACTGCGGCGGCGCCCAAGGGCCAGCAGATGTTGGATTTCCTCCG
CGATCTGGTCGAGAACAGGGAGGGCACGCCGGCCGCGACTCTCGCGGCGT
GGGCGAAGCGCTATTCCGGCGAGAACCCCGTGCTGGCGCGGCTTGGCGGC
CCGCTGATTGACCGCAGCGTCCGC
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