mRNA_P-wetherbeei_contig8603.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8603.1.1
Unique NamemRNA_P-wetherbeei_contig8603.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8603.1.1 vs. uniprot
Match: A0A7S2ZIN5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZIN5_9RHOD)

HSP 1 Score: 62.0 bits (149), Expect = 8.500e-7
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:  454 TIFLVAGFAADGDNAARACCTMTAMILDRELLRGSFFQAGVHVLAPELRRRAAVHEAGHFLLAYLLGIPVSAYHVTGLEALLGG 705
            T F+   +  D    A +   + A  LD+  LRGS F+A    L PE R +   HEAGH LLAYLLG P+  Y +   +ALL G
Sbjct:  164 TFFIARLYHVDMYATAISLGAIGAFALDQAFLRGSIFEAIYRSLFPEYREKILKHEAGHLLLAYLLGCPIRGYVIDAYDALLKG 247
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BLAST of mRNA_P-wetherbeei_contig8603.1.1 vs. uniprot
Match: A0A7S2ZIP3_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZIP3_9RHOD)

HSP 1 Score: 62.0 bits (149), Expect = 2.290e-6
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:  454 TIFLVAGFAADGDNAARACCTMTAMILDRELLRGSFFQAGVHVLAPELRRRAAVHEAGHFLLAYLLGIPVSAYHVTGLEALLGG 705
            T F+   +  D    A +   + A  LD+  LRGS F+A    L PE R +   HEAGH LLAYLLG P+  Y +   +ALL G
Sbjct:  164 TFFIARLYHVDMYATAISLGAIGAFALDQAFLRGSIFEAIYRSLFPEYREKILKHEAGHLLLAYLLGCPIRGYVIDAYDALLKG 247
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BLAST of mRNA_P-wetherbeei_contig8603.1.1 vs. uniprot
Match: A0A7S0LZG5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZG5_9CRYP)

HSP 1 Score: 59.7 bits (143), Expect = 1.020e-5
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  514 TMTAMILDRELLRGSFFQAGVHVLAPELRRRAAVHEAGHFLLAYLLGIPVSAYHVTGLEALLGGSLG 714
            T  A I+DR LL G+ F++   +L P+ + +   HEAGHFLLAYLLG P+  + ++  +A   G  G
Sbjct:  242 TALAFIVDRALLSGAVFESVYRLLFPQYKEKVIKHEAGHFLLAYLLGCPIQGFFLSAWDATKAGISG 308
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BLAST of mRNA_P-wetherbeei_contig8603.1.1 vs. uniprot
Match: A0A7S0HJE3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HJE3_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 1.640e-5
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:  523 AMILDRELLRGSFFQAGVHVLAPELRRRAAVHEAGHFLLAYLLGIPVSAYHVTGLEALLGGSLGGXXXXXMYYSEAL 753
            A++LDR LLRG+  +A   ++ P   R    HEAGHFL+AYLLG PV A  + G +A+  G         +++   L
Sbjct:  238 ALLLDRLLLRGAAGEAVTKLVQPAYARTVLQHEAGHFLVAYLLGCPVEAVLLDGFQAMRDGRFAAGTAGTVFFDPEL 314
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BLAST of mRNA_P-wetherbeei_contig8603.1.1 vs. uniprot
Match: A0A7S1FXL6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXL6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.320e-5
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:  514 TMTAMILDRELLRGSFFQAGVHVLAPELRRRAAVHEAGHFLLAYLLGIPVSAYHVTGLEAL----LGGSLGGXXXXXMYYSEALPSDDEDDLT 780
            T+  +  D+ LL G  F+  +  L PE R +   HEAGHFL+A+LLG PV    ++   AL     GG+ GG      +Y   L  +  D  T
Sbjct:  235 TLLLVAFDQLLLNGGLFETALKTLFPEYRAKVLRHEAGHFLIAHLLGCPVEGCVLSAWSALSDARFGGAGGGISAGTSFYDPVLSREINDSQT 327
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BLAST of mRNA_P-wetherbeei_contig8603.1.1 vs. uniprot
Match: A0A7S1XEF1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XEF1_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 9.650e-5
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  535 DRELLRGSFFQAGVHVLAPELRRRAAVHEAGHFLLAYLLGIPVSAYHVTGLEAL 696
            D+ L RG+FF+  + ++ P  R +   HEAGHFL+AYLLG+P+  Y +  ++A+
Sbjct:  236 DQLLFRGAFFEGVLRIVNPRHREKVVRHEAGHFLVAYLLGMPIRGYVLNSMDAI 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8603.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2ZIN5_9RHOD8.500e-741.67Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZIP3_9RHOD2.290e-641.67Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S0LZG5_9CRYP1.020e-541.79Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0HJE3_9EUKA1.640e-538.96Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S1FXL6_9STRA3.320e-535.48Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1XEF1_9RHOD9.650e-542.59Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8603contigP-wetherbeei_contig8603:2..2755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps3845
Model size2181
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.32e-08
EggNOG OGs28IYK@1|root,2QRAA@2759|Eukaryota,2XCCE@2836|Bacillariophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000640.1
Cds size1434
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.5931005-UTR-P-wetherbeei_contig8603:1..1331683187049.5931005-UTR-P-wetherbeei_contig8603:1..133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8603 2..133 +
1683187049.6296692-UTR-P-wetherbeei_contig8603:2140..27551683187049.6296692-UTR-P-wetherbeei_contig8603:2140..2755Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8603 2141..2755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.6057653-CDS-P-wetherbeei_contig8603:133..1711683187049.6057653-CDS-P-wetherbeei_contig8603:133..171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8603 134..171 +
1683187049.6139467-CDS-P-wetherbeei_contig8603:482..9511683187049.6139467-CDS-P-wetherbeei_contig8603:482..951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8603 483..951 +
1683187049.6217117-CDS-P-wetherbeei_contig8603:1213..21401683187049.6217117-CDS-P-wetherbeei_contig8603:1213..2140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8603 1214..2140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8603.1.1prot_P-wetherbeei_contig8603.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8603 134..2140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8603.1.1

>prot_P-wetherbeei_contig8603.1.1 ID=prot_P-wetherbeei_contig8603.1.1|Name=mRNA_P-wetherbeei_contig8603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=478bp
MSTEEIMMLLDDMSSLPGPLKPRGGCVGQFYGETYRRLKESDRGVRFGSV
RVGCLPRDLENVSPPVLGGSVAATATAATAAAAAAGDAGQASRWPSFLWA
AMMTAALTIFLVAGFAADGDNAARACCTMTAMILDRELLRGSFFQAGVHV
LAPELRRRAAVHEAGHFLLAYLLGIPVSAYHVTGLEALLGGSLGGGGSTV
MYYSEALPSDDEDDLTAAEINGPSEGGFAVGNAEQSSVAAGAVPAAAAVG
VAASSGSGQEASFSGGSGSDGRLQQRRRRRQREVEGEAGWHARQAVADRV
SVVLMGGVAAEALAFGNARGGAHDVHMLDALLQEWGLGTSTAGTAAAAAA
AAVDTATAAMGTATGTAAAEGAATEKVERDSGAQRRWALAEATRLLRADE
MALKRLVKAMSRRRGVGQCIAALEGQGMGGGGGSGRRGKGQQAAAVLTAK
WQPSSAPGASARRSAEAVREGHVARET*
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mRNA from alignment at P-wetherbeei_contig8603:2..2755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8603.1.1 ID=mRNA_P-wetherbeei_contig8603.1.1|Name=mRNA_P-wetherbeei_contig8603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2754bp|location=Sequence derived from alignment at P-wetherbeei_contig8603:2..2755+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTATTTCCAACCTTCATCGGCGTTGCGCTGGGTGTTTGCAGGGAGAAG
AGAGCCTTCGGTCCGGATTCGTGACGTTGTTAGCTTACTAAATGGCGACA
AAGCCCAAGCTGCCGTCGAGGCAACGTATTCAATGTCTACCGAGGAAATC
ATGATGCTCCTCGACGACATGTTTGTGTTGATTTGCTCTTTCTCCTTTCC
TCTCGCACCGCGATGTTATTGCTTCTCAGGCACTCGGTGTAGTTGTGTCT
GCGATGTGGTTGCGTCTGCTTATCAAATTTTCGCTTCCTGACATTGCAAT
ATCTTCATTTCGTGTCCTTATTCCTCCTTCGCCCCCGGTTTCAACCTCCT
CGGCGTTAGCCATTGTACGGCAAAAATTCTTCGCATTGCATTCATCCCGA
TGGCATTTTCTTTTCACATAGACCAATTGGGATGCTATTGACCGATCGCA
TTACTATCTCCTACGCTCCTCGCTGTACCAGGTCTTCCCTGCCCGGACCC
CTCAAGCCGCGCGGCGGCTGCGTCGGCCAGTTCTACGGGGAGACCTATCG
CCGACTGAAGGAAAGTGACCGCGGAGTGCGGTTCGGTTCCGTCAGAGTCG
GTTGCTTGCCGCGTGACTTGGAAAACGTTTCGCCGCCGGTGTTGGGAGGT
TCCGTCGCCGCCACCGCCACCGCCGCCACCGCCGCCGCCGCGGCCGCCGG
CGACGCAGGGCAGGCGAGTCGATGGCCGTCATTCCTGTGGGCGGCGATGA
TGACGGCGGCGCTCACGATATTTCTCGTCGCGGGCTTCGCCGCCGATGGC
GACAACGCCGCCCGGGCGTGTTGCACGATGACCGCGATGATTTTGGACCG
GGAGCTGCTGCGTGGTTCATTCTTCCAGGCGGGTGTCCACGTGCTGGCGC
CGGAGCTGCGGCGGCGGGCGGCCGTGCACGAAGCGGGCCACTTCTTGCTG
GTGAGAGGAGAAGAGAGGGCTTGTTCTTATCCATACCTTTCTTATCGCGT
TTCTGAATACGGCACGCAAGATTTCCTGGTACGAAGGCGCTGTTCTAGCT
ATGACGTTAGGCAACGAAGCTGGTTGAACCGTTATACTGTTTGCTGGATC
GAGCTCTTTGGGCAGGCAATGATATAAAGTTTCATGCTTCATACTTGCTC
CTCCACGACCCATTGTTGTAATGTCCTTTCGTCGGTGTTTTGAACCCGGT
CTCGTGTCGCAGGCATACCTCCTCGGGATCCCAGTGTCTGCGTATCACGT
CACAGGGCTCGAGGCGCTGCTGGGCGGCAGCCTCGGCGGCGGCGGCTCGA
CCGTCATGTACTACTCCGAAGCTCTGCCGTCCGACGACGAAGACGATCTG
ACGGCCGCAGAAATAAACGGACCGAGCGAAGGAGGCTTTGCTGTTGGCAA
CGCAGAGCAGAGCAGTGTTGCTGCCGGCGCCGTTCCCGCTGCTGCTGCCG
TCGGCGTCGCCGCCTCCAGTGGCTCCGGTCAGGAGGCCAGCTTTAGCGGC
GGGAGCGGCAGTGACGGCAGGTTACAGCAGCGGCGGCGACGGCGGCAGCG
GGAGGTGGAAGGCGAAGCCGGATGGCACGCGCGGCAGGCAGTGGCGGACC
GCGTGTCAGTCGTCCTGATGGGCGGCGTGGCGGCGGAAGCGCTCGCCTTC
GGCAACGCCCGCGGCGGCGCCCATGACGTCCACATGCTGGATGCCCTCCT
GCAAGAGTGGGGCCTCGGAACGTCGACGGCGGGGACGGCGGCGGCGGCGG
CAGCGGCGGCGGTGGATACAGCGACGGCGGCGATGGGAACAGCGACGGGG
ACGGCGGCAGCGGAAGGGGCCGCAACAGAGAAGGTGGAGCGCGATTCGGG
AGCGCAGCGGCGGTGGGCTCTGGCGGAGGCGACGCGGCTGCTGCGAGCGG
ACGAGATGGCGCTGAAGCGGCTCGTCAAGGCCATGTCGCGGCGCCGCGGC
GTCGGCCAGTGCATCGCAGCGCTGGAGGGGCAGGGCATGGGTGGTGGTGG
CGGCAGCGGCCGCAGGGGCAAGGGACAGCAAGCTGCTGCTGTCCTGACGG
CGAAGTGGCAGCCTTCTTCGGCTCCTGGTGCTTCGGCGAGAAGAAGCGCC
GAAGCAGTTCGGGAAGGACATGTTGCTCGCGAGACTTAGTGTAGCAGTGG
CAGCAGAACGAAAATAGTGTAAATGGAGGAGGAAAGGAGGAGTGGCGAGG
ACGGTGCCGCCCCGTAGTATGTGTTGAAGGACTGCAGCGAGCATTTGCCA
CGCTTTTTTGTCGCGATATGGCGTGGCTGGTGGAAAATTGGCAGTTGCGA
GAAGGTAGATGCCGAATTCGCTGCATTACTATATTGACGCAGGTTTTATC
CTGCTAGTTTTTTTCGCTGCAGCTTGTACCTGTCTGTCCTCTTGCACTGT
CTTCCCAATTGCCGAAGGTGGCGGAAAAGGTAAGCGCCTGAAGCCTCACT
CTGTCCTCGCTCTCTTTCCTTTTCGCAGCGATGCAATGTCCACTTCAAGA
CCTCACGTCCGGATCGGGCGGTACAGAAAGATATTGTACTCTCGGAGGCC
AAAAAATGCCTTGAAACAAAACGGTTCTCGACAAAGTTCCAGAGTGGGAG
CGTTCATCGACGATGCGCCACTTGCTGTTTTTCGCTCTTCTTACCTCCGC
AAGGGCCTTCTTCGTTTACATCCCATACTCGCCGTCTCTGACCTCTTGTC
TCCCTCTCCGAGTTGCTCCTCTTGCCGACGGCGAAGCGACTTATGGCATG
CCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8603:2..2755+

>mRNA_P-wetherbeei_contig8603.1.1 ID=mRNA_P-wetherbeei_contig8603.1.1|Name=mRNA_P-wetherbeei_contig8603.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1434bp|location=Sequence derived from alignment at P-wetherbeei_contig8603:2..2755+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTACCGAGGAAATCATGATGCTCCTCGACGACATGTCTTCCCTGCC
CGGACCCCTCAAGCCGCGCGGCGGCTGCGTCGGCCAGTTCTACGGGGAGA
CCTATCGCCGACTGAAGGAAAGTGACCGCGGAGTGCGGTTCGGTTCCGTC
AGAGTCGGTTGCTTGCCGCGTGACTTGGAAAACGTTTCGCCGCCGGTGTT
GGGAGGTTCCGTCGCCGCCACCGCCACCGCCGCCACCGCCGCCGCCGCGG
CCGCCGGCGACGCAGGGCAGGCGAGTCGATGGCCGTCATTCCTGTGGGCG
GCGATGATGACGGCGGCGCTCACGATATTTCTCGTCGCGGGCTTCGCCGC
CGATGGCGACAACGCCGCCCGGGCGTGTTGCACGATGACCGCGATGATTT
TGGACCGGGAGCTGCTGCGTGGTTCATTCTTCCAGGCGGGTGTCCACGTG
CTGGCGCCGGAGCTGCGGCGGCGGGCGGCCGTGCACGAAGCGGGCCACTT
CTTGCTGGCATACCTCCTCGGGATCCCAGTGTCTGCGTATCACGTCACAG
GGCTCGAGGCGCTGCTGGGCGGCAGCCTCGGCGGCGGCGGCTCGACCGTC
ATGTACTACTCCGAAGCTCTGCCGTCCGACGACGAAGACGATCTGACGGC
CGCAGAAATAAACGGACCGAGCGAAGGAGGCTTTGCTGTTGGCAACGCAG
AGCAGAGCAGTGTTGCTGCCGGCGCCGTTCCCGCTGCTGCTGCCGTCGGC
GTCGCCGCCTCCAGTGGCTCCGGTCAGGAGGCCAGCTTTAGCGGCGGGAG
CGGCAGTGACGGCAGGTTACAGCAGCGGCGGCGACGGCGGCAGCGGGAGG
TGGAAGGCGAAGCCGGATGGCACGCGCGGCAGGCAGTGGCGGACCGCGTG
TCAGTCGTCCTGATGGGCGGCGTGGCGGCGGAAGCGCTCGCCTTCGGCAA
CGCCCGCGGCGGCGCCCATGACGTCCACATGCTGGATGCCCTCCTGCAAG
AGTGGGGCCTCGGAACGTCGACGGCGGGGACGGCGGCGGCGGCGGCAGCG
GCGGCGGTGGATACAGCGACGGCGGCGATGGGAACAGCGACGGGGACGGC
GGCAGCGGAAGGGGCCGCAACAGAGAAGGTGGAGCGCGATTCGGGAGCGC
AGCGGCGGTGGGCTCTGGCGGAGGCGACGCGGCTGCTGCGAGCGGACGAG
ATGGCGCTGAAGCGGCTCGTCAAGGCCATGTCGCGGCGCCGCGGCGTCGG
CCAGTGCATCGCAGCGCTGGAGGGGCAGGGCATGGGTGGTGGTGGCGGCA
GCGGCCGCAGGGGCAAGGGACAGCAAGCTGCTGCTGTCCTGACGGCGAAG
TGGCAGCCTTCTTCGGCTCCTGGTGCTTCGGCGAGAAGAAGCGCCGAAGC
AGTTCGGGAAGGACATGTTGCTCGCGAGACTTAG
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