mRNA_P-wetherbeei_contig8599.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8599.2.1
Unique NamemRNA_P-wetherbeei_contig8599.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A2E2BD81_9GAMM (Uncharacterized protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E2BD81_9GAMM)

HSP 1 Score: 255 bits (651), Expect = 1.000e-75
Identity = 157/404 (38.86%), Postives = 203/404 (50.25%), Query Frame = 1
Query:    1 IAQFLMAGSMAGGVLFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGD--------------------------AASTAAEVAARP-----------------------------------------------------------------GDFVA-----GAGFANSRAALQDQD------------------------------NDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKI--GDSFGPGRYNSIWSNRRQTLTEV-NTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNLV 825
            I +  + G+M G +LFAG ASAIDWNITGFVRQEIAY ++S  N NN   +P+ND+I    TH ++                            A S+AA++A                                                                    GDF+       AGF  +   +                                  N+  DFNMFNTR E DIQAK +   +A++K R Y+DGT       +  GD+F   +Y   W N   + TE+ ++ D ++D+PA Y+DWN+GPLWLR+GNQ IAWGEAYFFR MDVANG+DLRRHLTLGPGAEEYQD R+A+PG+RLSYTF NG+E+DAFA M+SPTILPG+NTPY++V
Sbjct:    6 ITRISIFGAMIGSLLFAGVASAIDWNITGFVRQEIAYGISSHANENNIGGDPYNDKIVGHSTHASYNASNATDLTSSYVSATAGAAGLFEAAFLANSSAADIAKAATINSGFQDYTGYLHKKNTAEQLTAATWADKAIYLHPAGNNTNSAVNCRYGGLNAVRAGSTGLYGTGDFLGVSCSGDAGFTGALTNMMGSSMTATGGNMDGQTTGDAANHADVRSLQGAALNEDRDFNMFNTRAELDIQAKFSRNLAAFVKVRAYFDGTSWLEGSNVTGGDNFSQNKY---WYNGNGSPTEMYSSDDFMIDLPAAYVDWNQGPLWLRIGNQTIAWGEAYFFRVMDVANGLDLRRHLTLGPGAEEYQDSRVASPGIRLSYTFDNGWEIDAFAQMWSPTILPGKNTPYSVV 406          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A1Y5FUJ2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 50_400_T64 TaxID=1856294 RepID=A0A1Y5FUJ2_9GAMM)

HSP 1 Score: 195 bits (495), Expect = 2.480e-54
Identity = 107/267 (40.07%), Postives = 151/267 (56.55%), Query Frame = 1
Query:   25 SMAGGVLFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFGPGRYNSIWSNRRQ-TLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNL 822
            ++AG    + T SA D++++GF+RQE+AY +NSD NP N   +P N      L   +    +         PG      G           + +S D+N+F TR E D+     +  S  +K R YY          + D +G     S+ ++  + T   ++  D ++D+P+ YLD+ KGPLW+RVGNQ IAWGEA FFR  DVANG+DLRRHL L  GAEEY D+R++ PGVR SY  + G+EL+ FA MF PT+LP + +PYNL
Sbjct:   15 ALAGAPFLSPTVSAFDYSVSGFIRQEMAYKINSDQNPQNPNGDPANGSSVTNLAPLDPRSCSLINVLAGGTPGAGACSMGLIPPTFDKPKLEQES-DWNVFATRAEIDVNINFTNNLSGVVKVRGYY-------QPDVFDDYGDPNLFSVNNHGNEATYLSISDDDYMIDLPSLYLDYAKGPLWVRVGNQQIAWGEALFFRVADVANGLDLRRHLFLDFGAEEYADERLSAPGVRASYILTEGWELEVFAQMFQPTVLPNRGSPYNL 273          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A661GU30_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GU30_9GAMM)

HSP 1 Score: 194 bits (493), Expect = 4.890e-54
Identity = 102/270 (37.78%), Postives = 157/270 (58.15%), Query Frame = 1
Query:   25 SMAGGVLFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQP--FLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFGPGRYNSIWSNRRQ-TLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNLV 825
            ++ G  L +   SA D++++GF+RQE+AY +N+D NPNN   NP N + QP   LT P     A    +  + PG      G+          D ++ D+N+F TR E D+     +  + ++K R YY          + D +G     S+ ++  + T   ++  D ++D+P+ YLD+ KGPLW+RVG Q IAWGEA FFR  D+ANG+DLRRHL L  GAEEY D+R++ PG+R SY  +  +E++ F  MF P+++P + +PY+L+
Sbjct:   15 ALVGAPLLSPAVSAFDYSVSGFIRQEMAYKINNDQNPNNPHGNPLNGKSQPNSALTDPG----ACALIDGLSPPGLNPCSNGYIPPNLTKPKLDQET-DWNVFATRAEVDVSVNFTNNLTGFVKVRGYY-------QPDVFDDYGDNNLFSVDNHGNEATFLSISDDDYMVDLPSLYLDYAKGPLWVRVGQQQIAWGEALFFRVADMANGLDLRRHLFLDFGAEEYADERLSAPGIRASYNLNQDWEIEVFTQMFQPSVIPNRGSPYSLL 272          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A1Y5FY91_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 53_120_T64 TaxID=1856295 RepID=A0A1Y5FY91_9GAMM)

HSP 1 Score: 190 bits (482), Expect = 1.750e-52
Identity = 103/264 (39.02%), Postives = 152/264 (57.58%), Query Frame = 1
Query:   43 LFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANS---RAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFGPGRYNSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNLV 825
            L A   SA D++++GF+RQE+AY +NS  NPN+   NP N      L   +          +A    D +AG G  N    R   +   + S+D+N+  TR E DI   +++    + K R YY     F D    + FG   + +       T   ++  D I+D+P+ Y D++KGPLW+R+G Q IAWGEA FFR  D+ANG+DLRRHL    GAEEY D+R+++PG+R SY F+N +EL+ FA MF P+++P + +PY+L+
Sbjct:   21 LIAPPVSAFDYSVSGFIRQEMAYKINSSQNPNSAHGNPLNGVTVTNLVPLD---------PLACLAVDILAGVGCINGTLPRTKARKDLDQSVDWNVNATRAEIDISTYLSNNLKGFTKIRAYYQPDV-FNDYGDNNLFGVNNHGN-----EATYLSLSDDDYIIDLPSLYFDYSKGPLWVRLGQQQIAWGEALFFRVADMANGLDLRRHLFFDFGAEEYADERLSSPGIRASYNFANNWELEVFAQMFQPSVIPNRGSPYSLL 269          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A2N3EHW8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3EHW8_9PROT)

HSP 1 Score: 188 bits (478), Expect = 4.680e-52
Identity = 113/279 (40.50%), Postives = 158/279 (56.63%), Query Frame = 1
Query:    1 IAQFLMAGSMA--GGVLFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFGPGRY--NSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNLV 825
            +A  L+AG+    G + FA  ASA+D+N+ GF+RQE A  L  D       +NPFN R   +       D+          P  F AG+    +R  +   DND   FN+  TRLE D QA  N  ++ + + R Y+          I DS+G   +     W   R TL EVN  + ++D+PA Y D++ GPLW+R GNQ IAWGE+ FFR +DV NG+DLRRHL L   AEE+ D+R+++PGVR SY  SN  E++AF  +F+P+IL   +TPYN++
Sbjct:    8 VAGRLLAGTALALGAISFAQEASAVDFNVQGFIRQEPAIKLTGD-------ENPFNQRGNLYNGVTVTQDSTLLNLIPGFPPLGFPAGSVSVTNRP-ISGADND---FNLMATRLEVDFQANFNQNWNGFARLRGYF-------QPDIFDSYGDPEFFATPFWGGDRATLFEVNGKNYMMDLPALYADYSDGPLWIRFGNQQIAWGESLFFRVLDVPNGLDLRRHLLLDLVAEEFADERVSSPGVRGSYRVSNDLEIEAFTQLFNPSILANPDTPYNVI 268          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A2A5C3A1_9GAMM (Uncharacterized protein n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A5C3A1_9GAMM)

HSP 1 Score: 187 bits (474), Expect = 2.510e-51
Identity = 102/261 (39.08%), Postives = 148/261 (56.70%), Query Frame = 1
Query:   49 AGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPF--NDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFG-PGRYNSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNL 822
            +  ASA D +++GF+RQE+AY +N++ N  N   NP   +      L+HP       T + V A    F+            + ++N   D+N+F TR E +      +  S  +K R YY          + + +G P  ++        T   ++  D ++D+P+FYLD+ KGPLW+RVGNQ IAWGEA FFR  DVANG+DLRRHL L  GAEEY D+R++ PG+R SY  + G+EL+ FA MF P++LP + +PYNL
Sbjct:   20 SAVASAFDISVSGFIRQEMAYKINNNQNIQNPNGNPLEGSSLANKALSHPGSCQLIDTLSGVNACSNGFI-------PPTLDKPENNLESDWNVFATRAEVEFDMNFTNNLSGVVKIRGYY-------QPDVFEDYGNPNLFSVNNHGNEATYLSISDDDYMIDLPSFYLDYAKGPLWVRVGNQQIAWGEALFFRVADVANGLDLRRHLFLDFGAEEYADERLSAPGIRASYILTEGWELEVFAQMFQPSVLPNRGSPYNL 266          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A1Y5FUT1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 53_120_T64 TaxID=1856295 RepID=A0A1Y5FUT1_9GAMM)

HSP 1 Score: 186 bits (472), Expect = 4.930e-51
Identity = 111/281 (39.50%), Postives = 152/281 (54.09%), Query Frame = 1
Query:   13 LMAGSMAGGVLFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYD------------GTRHFTDGKIGDSFGPGRYNSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYN 819
            L A  +A  +L A  ASA +++++GF+RQE+AY LN+D N N    +PFN +   F                    G FV     A +     D+  ++ D+N+F TR E D    + +  + +MK R YY             G      G   D FG   +    SN   T   V+  D +LD+PA YLD++KGPLW+RVG Q IAWGEA FFR  DVANG+DLRRH     GAEEY D+R+++PG+R SY     +E++ FA MF PT+LP +N+PYN
Sbjct:   12 LSALGLATAILVAPMASAFEYSVSGFIRQEMAYKLNNDENYNLRGGSPFNGKTANFS-------------------GPFVP----AGTSTTQVDKSTNN-DWNVFATRAEVDFNFVLTNNLTGFMKVRGYYQPDVFNEADVRYQGENGKDYGDDIDYFGTKNF----SNGEATYLSVSDDDYMLDLPALYLDYSKGPLWVRVGQQQIAWGEALFFRVADVANGLDLRRHFFFDLGAEEYADERLSSPGIRASYIIDTHWEVEVFAQMFQPTVLPTRNSPYN 264          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A496WYQ4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WYQ4_9GAMM)

HSP 1 Score: 186 bits (471), Expect = 7.350e-51
Identity = 101/257 (39.30%), Postives = 149/257 (57.98%), Query Frame = 1
Query:   55 TASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFG-PGRYNSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNL 822
            TA A++ +I+GF+RQE+AY +++D NP N   NP N + +P L   + G  A         PG+ +  +G           D ++ D+N+F TR E D    I+D ++  +K R YY          + + +G P  +N        T    ++   ++D+P+ YLD+  GPLW+R+G Q IAWGEA FFR  DVANG+DLRRHL L  GAEEY D+R++ PG+R SY  +  +EL+ FA MF P++LP + +PYNL
Sbjct:   25 TAQAMEVDISGFIRQEMAYKISNDQNPQNPPGNPLNGKSRPNLALTDPGACALLDVLGGGAPGNGICSSGAIPPTLDKPKLDQEA-DWNVFATRAEVDFSMTISDNWTGLVKLRGYY-------QPDVFEDYGSPNLFNVDNHGNEATYLSHSSNHYMIDLPSAYLDYVNGPLWVRMGQQQIAWGEALFFRVADVANGLDLRRHLFLDFGAEEYADERLSAPGIRASYNLNQEWELEVFAQMFQPSVLPNRGSPYNL 273          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A2A5BVI6_9GAMM (Uncharacterized protein n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A5BVI6_9GAMM)

HSP 1 Score: 186 bits (471), Expect = 9.840e-51
Identity = 105/273 (38.46%), Postives = 150/273 (54.95%), Query Frame = 1
Query:   25 SMAGGVLFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFG------PGRYNSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNLV 825
            ++AG    + T SA D++++GF+RQE+AY LN++ NPN    N FN            G A  T  ++   P D +            +D   D+ D+N+F T+ E D+     +  + ++K R YY    +    K G + G      P ++         T   V+  D +LDIPA YLD+ KGPLW+R+G Q IAWGEA FFR  D+ANG+D RRH+    GAEEY D+RIA+PG+R SY     +E++ FA MF P+ILP   +PYNL+
Sbjct:   15 ALAGAPFLSPTVSAFDYSVSGFIRQEMAYKLNNNENPNTTGGNYFN------------GKAYKTKGKLTGLPADTII--------TGRRDLSTDN-DWNVFATKSEVDVSFNFTNNLTGFVKFRGYYQPDVYNQVDKSGFADGDEQKGLPDQFGVPNHGNEATYLSVSDDDYMLDIPAMYLDYAKGPLWVRIGQQQIAWGEALFFRVADMANGLDFRRHVIFDFGAEEYSDERIASPGIRGSYQVDENWEVEVFAQMFQPSILPTNYSPYNLI 266          
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Match: A0A1Y5G0Q4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium 50_400_T64 TaxID=1856294 RepID=A0A1Y5G0Q4_9GAMM)

HSP 1 Score: 184 bits (468), Expect = 1.730e-50
Identity = 107/261 (41.00%), Postives = 149/261 (57.09%), Query Frame = 1
Query:   43 LFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFNDRIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDND-SIDFNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFGPGRYNSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAYFFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDAFATMFSPTILPGQNTPYNL 822
            L +  ASA D +++GF+RQE+AY +N+  N  N   NP N      LT+    D  +     A   G   AG       A L  ++N+   D+N+F TR E +      +  S  +K R YY     F D    + FG   + +       T   ++  D ++D+P+FYLD+ KGPLW+RVGNQ IAWGE+ FFR  DVANG+DLRRHL L  GAEEY D+R++ PG+R SY  + G+EL+ FA MF P++LP + +PYNL
Sbjct:   20 LLSPVASAFDISVSGFIRQEMAYKINNHQNIQNPNGNPLNGTK---LTNAAVADPNACGLLDALASGACSAGL----IPATLDKEENNLESDWNVFATRAEIEFNMNFTNNLSGVVKVRGYYQPDV-FEDYGNPNLFGVNNHGN-----EATYLSISDDDYMIDLPSFYLDYAKGPLWVRVGNQQIAWGESLFFRVADVANGLDLRRHLFLDFGAEEYADERLSAPGIRASYILTEGWELEVFAQMFQPSVLPNRGSPYNL 267          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8599.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E2BD81_9GAMM1.000e-7538.86Uncharacterized protein n=1 Tax=Thiotrichales bact... [more]
A0A1Y5FUJ2_9GAMM2.480e-5440.07Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A661GU30_9GAMM4.890e-5437.78Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A1Y5FY91_9GAMM1.750e-5239.02Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2N3EHW8_9PROT4.680e-5240.50Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2A5C3A1_9GAMM2.510e-5139.08Uncharacterized protein n=1 Tax=Cellvibrionales ba... [more]
A0A1Y5FUT1_9GAMM4.930e-5139.50Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A496WYQ4_9GAMM7.350e-5139.30Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2A5BVI6_9GAMM9.840e-5138.46Uncharacterized protein n=1 Tax=Cellvibrionales ba... [more]
A0A1Y5G0Q4_9GAMM1.730e-5041.00Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8599contigP-wetherbeei_contig8599:3..1196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog402881.Plav_1158
Model size825
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.86e-50
EggNOG OGsCOG3419@1|root,COG3419@2|Bacteria,1R6MQ@1224|Proteobacteria
DescriptionTfp pilus assembly protein tip-associated adhesin
Cds size810
COG categoryNU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.9990232-CDS-P-wetherbeei_contig8599:2..5431683187048.9990232-CDS-P-wetherbeei_contig8599:2..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8599 3..543 -
1683187049.009083-CDS-P-wetherbeei_contig8599:912..11811683187049.009083-CDS-P-wetherbeei_contig8599:912..1181Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8599 913..1181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.017472-UTR-P-wetherbeei_contig8599:1181..11961683187049.017472-UTR-P-wetherbeei_contig8599:1181..1196Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8599 1182..1196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8599.2.1prot_P-wetherbeei_contig8599.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8599 3..1181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8599.2.1

>prot_P-wetherbeei_contig8599.2.1 ID=prot_P-wetherbeei_contig8599.2.1|Name=mRNA_P-wetherbeei_contig8599.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
MAGSMAGGVLFAGTASAIDWNITGFVRQEIAYSLNSDGNPNNDMDNPFND
RIQPFLTHPNFGDAASTAAEVAARPGDFVAGAGFANSRAALQDQDNDSID
FNMFNTRLEFDIQAKINDEFSAYMKTRVYYDGTRHFTDGKIGDSFGPGRY
NSIWSNRRQTLTEVNTPDAILDIPAFYLDWNKGPLWLRVGNQVIAWGEAY
FFRTMDVANGIDLRRHLTLGPGAEEYQDQRIATPGVRLSYTFSNGYELDA
FATMFSPTILPGQNTPYNLV
back to top

mRNA from alignment at P-wetherbeei_contig8599:3..1196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8599.2.1 ID=mRNA_P-wetherbeei_contig8599.2.1|Name=mRNA_P-wetherbeei_contig8599.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1194bp|location=Sequence derived from alignment at P-wetherbeei_contig8599:3..1196- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCCAATTTCTGATGGCCGGAAGCATGGCTGGCGGCGTTTTATTCGC CGGCACCGCTTCCGCCATCGATTGGAATATCACAGGTTTCGTTCGACAAG AGATTGCCTACAGTCTGAACTCGGACGGCAATCCGAACAACGACATGGAC AACCCGTTCAATGATCGGATCCAGCCCTTTCTCACGCATCCCAACTTTGG TGATGCGGCGTCGACGGCGGCAGAAGTTGCTGCTCGGCCAGGGGACTTTG TCGCTGGCGCCGGCTTCGCCAATTCGCGCGCTGCGTCCCATACCTACTGG GGACAGCAGCAAATTGGCGATGGCGACCTCGTGCCAGCCCCGCAGGGCTC CAGCGGTCCGTCCGTGTTCGACACCCCGGCTTCGCGAGCCGTTCAATTCG GAGGAGCCGGTGTTAATTCCAGCTCGCCAGTGGATTGCCATTACAGCCAG CAGGGTGCGATCGCCGCAGGTGCCAATCATGGCAGACTGGGCTTTGGTCC CAACATCGGTGGCTTTACCGCGTTTCCAGGCGTTTTGTGCCCGGCACCCG CCGGTTCCAGCCAGCGCCTGCCGGGTGGTTCCTCGACCTTGAATGCCGAC GGCACCACGCGCGTCACCGCCAATGCCCGCCCCGGCAAGGCGCCGGCCGG CAGCTTGCAGGACCAGGACAACGATTCGATTGACTTCAATATGTTCAACA CTCGTCTTGAGTTTGATATCCAGGCGAAGATCAATGACGAGTTCTCGGCC TACATGAAGACCCGCGTGTACTACGACGGTACCCGCCACTTCACCGACGG CAAGATTGGCGACAGCTTTGGTCCGGGCCGCTATAACAGCATCTGGAGCA ACCGCCGCCAGACCCTGACTGAAGTCAATACGCCCGACGCCATCCTCGAC ATCCCGGCGTTCTATCTCGATTGGAACAAGGGACCGTTGTGGCTGCGTGT CGGTAACCAGGTTATCGCCTGGGGTGAAGCCTACTTCTTCCGCACCATGG ACGTTGCCAACGGCATCGACCTGCGTCGCCACCTGACCTTGGGGCCGGGT GCTGAAGAATATCAGGACCAGCGTATTGCCACGCCGGGTGTGCGTTTGAG CTACACCTTCAGCAATGGCTATGAGCTGGACGCGTTTGCGACGATGTTCT CGCCGACTATCCTGCCGGGGCAGAACACGCCGTATAACCTGGTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8599:3..1196-

>mRNA_P-wetherbeei_contig8599.2.1 ID=mRNA_P-wetherbeei_contig8599.2.1|Name=mRNA_P-wetherbeei_contig8599.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig8599:3..1196- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGAAGCATGGCTGGCGGCGTTTTATTCGCCGGCACCGCTTCCGC
CATCGATTGGAATATCACAGGTTTCGTTCGACAAGAGATTGCCTACAGTC
TGAACTCGGACGGCAATCCGAACAACGACATGGACAACCCGTTCAATGAT
CGGATCCAGCCCTTTCTCACGCATCCCAACTTTGGTGATGCGGCGTCGAC
GGCGGCAGAAGTTGCTGCTCGGCCAGGGGACTTTGTCGCTGGCGCCGGCT
TCGCCAATTCGCGCGCTGCCTTGCAGGACCAGGACAACGATTCGATTGAC
TTCAATATGTTCAACACTCGTCTTGAGTTTGATATCCAGGCGAAGATCAA
TGACGAGTTCTCGGCCTACATGAAGACCCGCGTGTACTACGACGGTACCC
GCCACTTCACCGACGGCAAGATTGGCGACAGCTTTGGTCCGGGCCGCTAT
AACAGCATCTGGAGCAACCGCCGCCAGACCCTGACTGAAGTCAATACGCC
CGACGCCATCCTCGACATCCCGGCGTTCTATCTCGATTGGAACAAGGGAC
CGTTGTGGCTGCGTGTCGGTAACCAGGTTATCGCCTGGGGTGAAGCCTAC
TTCTTCCGCACCATGGACGTTGCCAACGGCATCGACCTGCGTCGCCACCT
GACCTTGGGGCCGGGTGCTGAAGAATATCAGGACCAGCGTATTGCCACGC
CGGGTGTGCGTTTGAGCTACACCTTCAGCAATGGCTATGAGCTGGACGCG
TTTGCGACGATGTTCTCGCCGACTATCCTGCCGGGGCAGAACACGCCGTA
TAACCTGGTT
back to top