mRNA_P-wetherbeei_contig8590.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8590.2.1
Unique NamemRNA_P-wetherbeei_contig8590.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8590.2.1 vs. uniprot
Match: A0A7X9AF54_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AF54_9BURK)

HSP 1 Score: 365 bits (937), Expect = 4.860e-117
Identity = 208/480 (43.33%), Postives = 287/480 (59.79%), Query Frame = 1 
Query:   58 LAQGAERYASIDPVFSKRLETAAESCLRPIAGWVASYGQMQEIHGEREPAWLHSQPEAASEAILAWTTLDKLHPNPTRRDLVQKFAAGLVLLHHIEPQKYPFRAHTSF--APGRPDFPAYAPLQEVGKAPGAMWIPERSRQVEALVTASEYLVDKSLLEEAQQEGLGMWTHLVVSGKLPVYFAPSPEGKASL-RSASVVIDQFRALQRSNPNAVYATLLSLAANWEHSLTPQCEADKDAL-RWIRSSTARLPDGPKLRQASDLYPPVSYQIMQAEEGKAVQKAFDLVNVVYPGGNAGKMARVGRENMFWMRFDVDREEDYFFHMVFLKSKLEGGLISVMMRIDGDKIFKVPLGGATD-AFVDMDFVDGPRTLRQGPHSFGIRFSGLLMTQPALLDCVVAWPVVERRFLKLDAHRRMLILH--NNSPMAAKATCKEVAGIVPVVTAVDGSGAPASLGREVDKRRRKEYIVVPAAGTAVLEW 1476
            LA+GA      D   + RL   A   LRP+  W+  +G+  ++HG +EP W+H  P+  ++A+LAW +LD+ H  P  R+L+++ A GL  L       YPF AH S   A GRP    Y          G  WI ER++ V AL  A + L D ++LE A++EGLG+  HL VSG++P  FAP PE +AS  RS + V++    L ++ P  V++ L  LAA       P  EA +  + R +  + A    G     A DL P     +++AE+G+AV+KAF+ V + YPGG  GK+A VGRENMFWMRFDVDRE++Y F++ FLKS++ GGL+SVMMRIDGD+IF+V LGGA+D  +VD+D V GPR LRQGPHSFGIRFSGLLM QPA+LD V+  P V RR++ L   R +L++   N+ P+  +    E  G  P    + G G P       D+R R  ++ +P  G A+LEW
Sbjct:   90 LAEGAVAMRESDSALAGRLAGEAARLLRPLESWMDDFGKFTKVHGFQEPVWVHGNPDVLAQAVLAWISLDEFHSAPDGRELIRRGAEGLKSLLRGNFSTYPFGAHISAVTAQGRPR--TYVAPGTGNPVAGLSWIVERNQVVAALSRAGQLLGDSTMLESAEREGLGLLAHLAVSGRIPHGFAPRPEFEASNPRSVAAVVENLATLHQALPKPVFSDLTGLAAARLQGEGPLFEASRLLVARMLARAGASRWSG-----ARDLRPAFGTLVVEAEDGRAVEKAFEAVPIRYPGGTPGKLAVVGRENMFWMRFDVDREDEYLFYLAFLKSEVSGGLVSVMMRIDGDRIFQVNLGGASDDPYVDVDLVAGPRRLRQGPHSFGIRFSGLLMRQPAVLDSVIVKPAVARRWMTLRDGREILVMKGINSEPLQIRMEELEAEGESPTWNLISGMGNPIPAKLSTDRRGRV-WLEMPPGGVAILEW 561
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BLAST of mRNA_P-wetherbeei_contig8590.2.1 vs. uniprot
Match: A0A355TRW1_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TRW1_9BACT)

HSP 1 Score: 320 bits (820), Expect = 1.490e-98
Identity = 193/503 (38.37%), Postives = 275/503 (54.67%), Query Frame = 1 
Query:   31 YLQAFAGWTLAQGAERYASIDPVFSKRLETAAESCLRPIAGWVASYGQMQEIHGEREPAWLHSQPEAASEAILAWTTLDKLHPNPTRRDLVQKFAAGLVLLHHIEPQKYPFRAHTSFAPGRPDFPAYAPLQEVGKAPGAMWIPERSRQVEALVTASEYLVDKSLLEEAQQEGLGMWTHLVVSGKLPVYFAPSPEGKA-SLRSASVVIDQFRALQRSNPNAVYATLLSLAA-------NWEH-----SLTPQCEADKDALRWIRSSTARLPDGPKLRQASDLYPPVSYQIMQAEEGKAVQKAFDLVNVVYPGGNAGKMARVGRENMFWMRFDVDREEDYFFHMVFLKSKLEGGLISVMMRIDGDKIFKVPLGGATD-AFVDMDFVDGPRTLRQGPHSFGIRFSGLLMTQPALLDCVVAWPVVERRFLKLDAHRRMLILHNNSPMAAKATCKEV---AGIVPVVTAVDGSGAPASLGREVDKRRRKEYIVVPAAGTAVLEWNEGN 1488
            Y +A+A    A+GA   AS     S+RL  +AE  L  +  W+  YG+   +HG  EPAWL+ + +AAS+A+LA   L+   P   RRD + K A GLV     + ++YP+ AH S+         Y   QE  K  G    PER     AL  A++ L +      A++EG+G+   L +SGK+P   AP PE +  S+     +++   AL+    N +Y TL   AA       +  H     SL     +      WI               A D+  P +   ++ E GKAV+KAFD+ ++ YPGG  G+   VGR+NMFWMRFDV+R++ Y+F M FLKS   G L+S+M+RIDGD+IF+V LGGATD   VD  F++GPR LRQGPHS G+RF+GLLM  PA+LD ++  P + RR++KL   R  +++H+ S    K   +E+       P  T ++G+G PA      DKR R  ++ +PA GTAVLEW+ G+
Sbjct:  170 YTRAYAAHVKARGA-LVASGRGNLSERLVKSAERDLEFVDSWLKIYGRRNTVHGLIEPAWLYGRVDAASQAVLALCLLENYRPKAERRDKIAKLADGLVTAMRPDTKQYPYGAHLSYVTEENRERTYKVPQEDKKVAGITLYPERQYASMALAKAAQLLKNDDFKASAEKEGMGLLAKLALSGKVPYCLAPRPEEEVRSILGTVALVENLLALKDCTGNNIYGTLAGCAAVDINKFDDHGHNVKAKSLVNYLLSTHGCSEWIG--------------AKDICRPFAGTNVELEAGKAVEKAFDVADINYPGGTPGQFVVVGRDNMFWMRFDVERDDPYYFSMDFLKSSFSGALVSIMVRIDGDQIFRVNLGGATDDPCVDSVFINGPRPLRQGPHSVGVRFAGLLMKSPAILDSIIVDPAIGRRWVKLSDGRARMVMHSISDQVLKTRMQELEEKGAESPTWTLIEGAGTPAVKQLSNDKRGRA-WLEMPAGGTAVLEWSNGH 656
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8590.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X9AF54_9BURK4.860e-11743.33Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A355TRW1_9BACT1.490e-9838.37Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8590contigP-wetherbeei_contig8590:1093..2673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1128421.JAGA01000002_gene988
PFAMsDUF4861
Model size1506
Max annot lvl2|Bacteria
KEGG koko:K02027
KEGG TC3.A.1.1
KEGG ModuleM00207
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.01e-08
EggNOG OGsCOG1331@1|root,COG1331@2|Bacteria,2NPT4@2323|unclassified Bacteria
DescriptionHighly conserved protein containing a thioredoxin domain
Cds size1506
COG categoryO
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.7544825-CDS-P-wetherbeei_contig8590:1092..21821683187048.7544825-CDS-P-wetherbeei_contig8590:1092..2182Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8590 1093..2182 -
1683187048.7642636-CDS-P-wetherbeei_contig8590:2257..26731683187048.7642636-CDS-P-wetherbeei_contig8590:2257..2673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8590 2258..2673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8590.2.1prot_P-wetherbeei_contig8590.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8590 1093..2673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8590.2.1

>prot_P-wetherbeei_contig8590.2.1 ID=prot_P-wetherbeei_contig8590.2.1|Name=mRNA_P-wetherbeei_contig8590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=502bp
MGHSGEARTPYLQAFAGWTLAQGAERYASIDPVFSKRLETAAESCLRPIA
GWVASYGQMQEIHGEREPAWLHSQPEAASEAILAWTTLDKLHPNPTRRDL
VQKFAAGLVLLHHIEPQKYPFRAHTSFAPGRPDFPAYAPLQEVGKAPGAM
WIPERSRQVEALVTASEYLVDKSLLEEAQQEGLGMWTHLVVSGKLPVYFA
PSPEGKASLRSASVVIDQFRALQRSNPNAVYATLLSLAANWEHSLTPQCE
ADKDALRWIRSSTARLPDGPKLRQASDLYPPVSYQIMQAEEGKAVQKAFD
LVNVVYPGGNAGKMARVGRENMFWMRFDVDREEDYFFHMVFLKSKLEGGL
ISVMMRIDGDKIFKVPLGGATDAFVDMDFVDGPRTLRQGPHSFGIRFSGL
LMTQPALLDCVVAWPVVERRFLKLDAHRRMLILHNNSPMAAKATCKEVAG
IVPVVTAVDGSGAPASLGREVDKRRRKEYIVVPAAGTAVLEWNEGNSSSN
P*
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mRNA from alignment at P-wetherbeei_contig8590:1093..2673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8590.2.1 ID=mRNA_P-wetherbeei_contig8590.2.1|Name=mRNA_P-wetherbeei_contig8590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1581bp|location=Sequence derived from alignment at P-wetherbeei_contig8590:1093..2673- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGACATAGCGGCGAGGCTCGCACCCCTTATCTACAGGCTTTTGCGGG
TTGGACTCTGGCCCAGGGAGCGGAACGCTACGCGTCCATCGATCCGGTCT
TCTCCAAGCGTCTGGAAACCGCGGCCGAAAGCTGCCTCAGGCCCATCGCC
GGATGGGTGGCCAGCTACGGCCAGATGCAAGAGATCCACGGGGAGCGTGA
GCCGGCCTGGCTGCATTCTCAGCCTGAAGCGGCCTCCGAGGCCATCCTGG
CCTGGACCACGCTAGACAAGCTTCACCCCAATCCCACCCGACGTGATCTC
GTGCAGAAGTTTGCCGCGGGACTGGTGCTCCTCCATCACATCGAACCCCA
GAAATATCCGTTCCGGGCCCACACTTCGTTTGCTCCAGGACGCCCCGATT
TCCCGGCTTACGCGCCGTTGCTCGAGCGAATCGCCGCGGCTGCGGTGCCC
ACGAGCGATGCCGCCGACGCCACCACTCTGACCCCCCCCAGTCTTCAAGA
GGTGGGCAAAGCTCCCGGTGCCATGTGGATTCCCGAGCGCAGCCGTCAGG
TCGAGGCTCTGGTCACCGCCTCCGAATACCTGGTCGACAAGTCCCTTCTC
GAAGAGGCGCAGCAAGAGGGCCTGGGCATGTGGACGCATCTGGTCGTTTC
GGGGAAACTGCCTGTCTACTTCGCTCCCAGTCCCGAAGGCAAGGCCAGCC
TGCGTTCAGCCTCTGTGGTCATCGATCAGTTTCGCGCTCTGCAGCGTTCC
AATCCAAACGCAGTCTACGCGACGCTGCTGAGCCTGGCCGCCAACTGGGA
GCACTCTCTAACTCCCCAGTGCGAGGCCGACAAAGATGCTCTTCGATGGA
TCCGAAGCTCGACCGCCAGGCTGCCCGATGGTCCCAAATTACGCCAGGCC
AGCGACCTGTACCCGCCCGTGAGCTACCAGATCATGCAGGCCGAGGAAGG
TAAGGCCGTTCAAAAGGCTTTTGACCTGGTGAACGTTGTCTATCCCGGAG
GGAATGCCGGTAAGATGGCCCGAGTTGGCCGCGAGAATATGTTCTGGATG
CGCTTTGACGTGGACCGCGAGGAAGACTACTTCTTTCATATGGTCTTTCT
CAAGTCCAAGCTCGAGGGCGGCTTGATTTCGGTGATGATGCGCATCGACG
GCGACAAAATCTTCAAGGTGCCGCTGGGCGGAGCCACCGACGCATTTGTC
GACATGGACTTCGTCGATGGGCCGCGCACGCTCCGTCAGGGACCTCACTC
TTTTGGCATCCGCTTTTCTGGCCTCTTGATGACGCAGCCGGCTCTCCTTG
ATTGTGTGGTGGCCTGGCCCGTCGTCGAAAGACGATTTCTAAAGCTCGAC
GCCCATCGGCGCATGCTGATTTTGCACAACAACTCTCCGATGGCCGCGAA
AGCGACCTGCAAGGAAGTGGCCGGCATCGTTCCGGTGGTGACGGCCGTCG
ACGGCAGCGGCGCTCCCGCCTCTTTGGGGCGCGAAGTGGATAAGCGGCGC
CGCAAAGAATATATTGTCGTTCCCGCAGCAGGTACAGCGGTGCTCGAGTG
GAATGAAGGAAATTCAAGTTCCAACCCCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8590:1093..2673-

>mRNA_P-wetherbeei_contig8590.2.1 ID=mRNA_P-wetherbeei_contig8590.2.1|Name=mRNA_P-wetherbeei_contig8590.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1506bp|location=Sequence derived from alignment at P-wetherbeei_contig8590:1093..2673- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGACATAGCGGCGAGGCTCGCACCCCTTATCTACAGGCTTTTGCGGG
TTGGACTCTGGCCCAGGGAGCGGAACGCTACGCGTCCATCGATCCGGTCT
TCTCCAAGCGTCTGGAAACCGCGGCCGAAAGCTGCCTCAGGCCCATCGCC
GGATGGGTGGCCAGCTACGGCCAGATGCAAGAGATCCACGGGGAGCGTGA
GCCGGCCTGGCTGCATTCTCAGCCTGAAGCGGCCTCCGAGGCCATCCTGG
CCTGGACCACGCTAGACAAGCTTCACCCCAATCCCACCCGACGTGATCTC
GTGCAGAAGTTTGCCGCGGGACTGGTGCTCCTCCATCACATCGAACCCCA
GAAATATCCGTTCCGGGCCCACACTTCGTTTGCTCCAGGACGCCCCGATT
TCCCGGCTTACGCGCCTCTTCAAGAGGTGGGCAAAGCTCCCGGTGCCATG
TGGATTCCCGAGCGCAGCCGTCAGGTCGAGGCTCTGGTCACCGCCTCCGA
ATACCTGGTCGACAAGTCCCTTCTCGAAGAGGCGCAGCAAGAGGGCCTGG
GCATGTGGACGCATCTGGTCGTTTCGGGGAAACTGCCTGTCTACTTCGCT
CCCAGTCCCGAAGGCAAGGCCAGCCTGCGTTCAGCCTCTGTGGTCATCGA
TCAGTTTCGCGCTCTGCAGCGTTCCAATCCAAACGCAGTCTACGCGACGC
TGCTGAGCCTGGCCGCCAACTGGGAGCACTCTCTAACTCCCCAGTGCGAG
GCCGACAAAGATGCTCTTCGATGGATCCGAAGCTCGACCGCCAGGCTGCC
CGATGGTCCCAAATTACGCCAGGCCAGCGACCTGTACCCGCCCGTGAGCT
ACCAGATCATGCAGGCCGAGGAAGGTAAGGCCGTTCAAAAGGCTTTTGAC
CTGGTGAACGTTGTCTATCCCGGAGGGAATGCCGGTAAGATGGCCCGAGT
TGGCCGCGAGAATATGTTCTGGATGCGCTTTGACGTGGACCGCGAGGAAG
ACTACTTCTTTCATATGGTCTTTCTCAAGTCCAAGCTCGAGGGCGGCTTG
ATTTCGGTGATGATGCGCATCGACGGCGACAAAATCTTCAAGGTGCCGCT
GGGCGGAGCCACCGACGCATTTGTCGACATGGACTTCGTCGATGGGCCGC
GCACGCTCCGTCAGGGACCTCACTCTTTTGGCATCCGCTTTTCTGGCCTC
TTGATGACGCAGCCGGCTCTCCTTGATTGTGTGGTGGCCTGGCCCGTCGT
CGAAAGACGATTTCTAAAGCTCGACGCCCATCGGCGCATGCTGATTTTGC
ACAACAACTCTCCGATGGCCGCGAAAGCGACCTGCAAGGAAGTGGCCGGC
ATCGTTCCGGTGGTGACGGCCGTCGACGGCAGCGGCGCTCCCGCCTCTTT
GGGGCGCGAAGTGGATAAGCGGCGCCGCAAAGAATATATTGTCGTTCCCG
CAGCAGGTACAGCGGTGCTCGAGTGGAATGAAGGAAATTCAAGTTCCAAC
CCCTAA
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