mRNA_P-wetherbeei_contig8582.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8582.2.1
Unique NamemRNA_P-wetherbeei_contig8582.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: D8LQG1_ECTSI (DEP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.950e-23
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 LCGRMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQFKGADARWESVQNMSDEAAKAMAYRMNLELE 322
            LC +MR  I + DR Y    ++  F G+ AV WM    +A S NEA+ IG+RL+EFGL+DHV    RF DE +FY+F+   A W     M  +AAKA+A RMN+E+E
Sbjct:   11 LCLKMRSCIPIEDRDYGSTIFKKSFVGSQAVDWMCDTGIAASRNEAVAIGQRLVEFGLVDHVNSIFRFMDELLFYEFRTKGANWAKATEMDIDAAKALAIRMNMEIE 117          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A835W5K2_CHLIN (DEP domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W5K2_CHLIN)

HSP 1 Score: 83.6 bits (205), Expect = 5.150e-16
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 LCGRMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQFKGAD 244
            L   +R G+ + DR Y F+ Y  CF G +AV W+VAA  A  P EA+ +G  +ME GL  HV+ +HRF+D+ +FY+F   D
Sbjct:   27 LAAALRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDDD 107          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A2K3DW24_CHLRE (DEP domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DW24_CHLRE)

HSP 1 Score: 83.2 bits (204), Expect = 7.040e-16
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    2 LCGRMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQF 232
            L   MR G+ + DR Y F+ Y  CF G +AV W+VAA  A  P EA+ +G  +ME GL  HV+ +HRF+D+ +FY+F
Sbjct:   12 LATAMRGGVRIKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGPAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRF 88          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A835WVW9_9CHLO (DEP domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WVW9_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 2.440e-15
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 LCGRMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQFKGAD 244
            L   +R G+ V DR Y F+ Y  CF G +AV W+VAA  A    EA+ +G  +ME GL  HV+ +HRF+D+ +FY+F   D
Sbjct:   12 LAAALRRGVRVKDRRYLFRCYRACFVGQEAVAWLVAAGAAAGAAEAVALGNSMMEAGLFHHVVYEHRFEDDYLFYRFTDDD 92          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A4Y6Q314_9DELT (FAD-containing oxidoreductase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q314_9DELT)

HSP 1 Score: 74.7 bits (182), Expect = 6.050e-13
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 2
Query:    2 LCGRMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQF 232
            L  ++RE + + DR Y  + YE CF G +A  WMV A VA    EA  IG  L+E G+  HV+ +H+F+++ +FY+F
Sbjct:    6 LIEKLRENVEITDRTYRLETYEDCFVGEEACAWMVEAGVARDIEEAERIGNLLLEAGVFHHVLREHKFENDYLFYRF 82          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A6P0Y2Y8_9CYAN (DEP domain-containing protein (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0Y2Y8_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 4.230e-12
Identity = 29/74 (39.19%), Postives = 50/74 (67.57%), Query Frame = 2
Query:   11 RMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQF 232
            R   G+ + DR + FK ++  F G+DAV W++  + A +  EA+ +G+ +++ G+I HV+ +H FKDEP+FY+F
Sbjct:   31 RGANGVSIKDRKFQFKKFQNVFFGSDAVEWLMTHERA-TREEAILMGQLMLQQGIIHHVLDEHNFKDEPLFYRF 103          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A845XCG9_9CYAN (DEP domain-containing protein n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845XCG9_9CYAN)

HSP 1 Score: 67.0 bits (162), Expect = 6.240e-12
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 2
Query:   11 RMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQF 232
            R  +G+ V DR +  K Y  CF G++AV W+VA  +  S  EALE+G++L+E   I HV+ +H FKDE +FY F
Sbjct:   20 RSPDGVDVQDRRHQLKTYPQCFVGSEAVDWLVA-HLRISREEALEVGQQLIERQWITHVLRNHPFKDEYLFYCF 92          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A7S0N8A5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8A5_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 1.070e-11
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 2
Query:    2 LCGRMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQF 232
            L  RM  GI V D ++   AYE CFTG +AV WMV A  A S   AL +G +L+   LI H+  ++ F++  IFY+F
Sbjct:   24 LVQRMAAGIPVRDHLHYMLAYEACFTGREAVEWMVGAGEAESAERALCLGNQLLRANLIFHIYNENPFENATIFYRF 100          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: A0A0L0DTK9_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DTK9_THETB)

HSP 1 Score: 70.9 bits (172), Expect = 1.240e-11
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 2
Query:   14 MREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQF 232
            +R G+ V DR Y FK Y  CF G++AV ++V      S  EA+E+G ++   GL  HV+ DH FKD+ +FY F
Sbjct:  143 VRTGVEVKDRKYRFKKYRQCFVGSEAVDFLVDNGYVASRFEAVELGEKMRAAGLFSHVVDDHGFKDDKLFYAF 215          
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Match: X6MLF0_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MLF0_RETFI)

HSP 1 Score: 68.9 bits (167), Expect = 1.920e-11
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   11 RMREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLMEFGLIDHVMGDHRFKDEPIFYQF-KGADAR 250
            ++ E + + DR Y FK Y+ CF G D VT+ V + +  + +EA+++G  L++   I HV+ DH FK+E +FY+F +GA +R
Sbjct:   17 KISEHVEIKDRAYHFKIYKECFVGKDLVTYFVNSGLVKTVSEAVDLGNLLIKEDYIKHVLYDHGFKNEKLFYEFTEGAKSR 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8582.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQG1_ECTSI8.950e-2346.73DEP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835W5K2_CHLIN5.150e-1644.44DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A2K3DW24_CHLRE7.040e-1646.75DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A835WVW9_9CHLO2.440e-1544.44DEP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A4Y6Q314_9DELT6.050e-1341.56FAD-containing oxidoreductase n=2 Tax=Persicimonas... [more]
A0A6P0Y2Y8_9CYAN4.230e-1239.19DEP domain-containing protein (Fragment) n=1 Tax=O... [more]
A0A845XCG9_9CYAN6.240e-1245.95DEP domain-containing protein n=1 Tax=Spirulina sp... [more]
A0A7S0N8A5_9CHLO1.070e-1144.16Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A0L0DTK9_THETB1.240e-1143.84Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
X6MLF0_RETFI1.920e-1139.51Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8582contigP-wetherbeei_contig8582:1678..2092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227086.JGI_V11_75616
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,ZU5
Model size416
Max annot lvl2759|Eukaryota
KEGG koko:K15502,ko:K15503,ko:K20032,ko:K21440
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.02e-12
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
EC2.3.1.225
Descriptionprotein ubiquitination
Cds size402
COG categoryI
BRITEko00000,ko01000,ko01009,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.3154228-CDS-P-wetherbeei_contig8582:1677..20791683187048.3154228-CDS-P-wetherbeei_contig8582:1677..2079Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8582 1678..2079 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.3279123-UTR-P-wetherbeei_contig8582:2079..20921683187048.3279123-UTR-P-wetherbeei_contig8582:2079..2092Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8582 2080..2092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8582.2.1prot_P-wetherbeei_contig8582.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8582 1678..2079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8582.2.1

>prot_P-wetherbeei_contig8582.2.1 ID=prot_P-wetherbeei_contig8582.2.1|Name=mRNA_P-wetherbeei_contig8582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MREGIVVCDRIYSFKAYEGCFTGADAVTWMVAADVAGSPNEALEIGRRLM
EFGLIDHVMGDHRFKDEPIFYQFKGADARWESVQNMSDEAAKAMAYRMNL
ELEMADHRAPAPAAVTDDNGENDGFAAEGDSSGE
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mRNA from alignment at P-wetherbeei_contig8582:1678..2092-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8582.2.1 ID=mRNA_P-wetherbeei_contig8582.2.1|Name=mRNA_P-wetherbeei_contig8582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=415bp|location=Sequence derived from alignment at P-wetherbeei_contig8582:1678..2092- (Phaeothamnion wetherbeei SAG_119_79)
GCTCTGCGGGCGGATGCGTGAGGGCATCGTGGTCTGCGACCGCATTTACA GCTTCAAAGCGTACGAGGGCTGCTTCACGGGTGCCGACGCAGTCACGTGG ATGGTCGCTGCCGACGTCGCCGGCTCCCCTAACGAGGCACTTGAGATCGG CCGCCGCCTGATGGAGTTCGGGCTGATCGACCACGTCATGGGGGACCACC GCTTCAAGGATGAGCCGATTTTTTACCAGTTCAAAGGGGCGGACGCTCGA TGGGAGTCCGTCCAAAACATGTCCGATGAGGCTGCCAAGGCAATGGCCTA CCGGATGAACCTCGAACTCGAGATGGCCGACCACCGCGCGCCGGCGCCCG CCGCAGTAACCGACGACAACGGCGAAAATGACGGTTTCGCTGCCGAGGGA GACAGCAGCGGAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8582:1678..2092-

>mRNA_P-wetherbeei_contig8582.2.1 ID=mRNA_P-wetherbeei_contig8582.2.1|Name=mRNA_P-wetherbeei_contig8582.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig8582:1678..2092- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGAGGGCATCGTGGTCTGCGACCGCATTTACAGCTTCAAAGCGTA
CGAGGGCTGCTTCACGGGTGCCGACGCAGTCACGTGGATGGTCGCTGCCG
ACGTCGCCGGCTCCCCTAACGAGGCACTTGAGATCGGCCGCCGCCTGATG
GAGTTCGGGCTGATCGACCACGTCATGGGGGACCACCGCTTCAAGGATGA
GCCGATTTTTTACCAGTTCAAAGGGGCGGACGCTCGATGGGAGTCCGTCC
AAAACATGTCCGATGAGGCTGCCAAGGCAATGGCCTACCGGATGAACCTC
GAACTCGAGATGGCCGACCACCGCGCGCCGGCGCCCGCCGCAGTAACCGA
CGACAACGGCGAAAATGACGGTTTCGCTGCCGAGGGAGACAGCAGCGGAG
AG
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