mRNA_P-wetherbeei_contig8574.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8574.2.1
Unique NamemRNA_P-wetherbeei_contig8574.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8574.2.1 vs. uniprot
Match: D7FNQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.290e-20
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:    1 DDERLYYGLTFKKDVETRFAPRLQPLPPDAAAGERYAIGETVESTAGKGVWYPATVVAARDNDTYDVRHDDGETASHVFSHQVRRRIPRRYSPLLRLLFAGALVLAAGWPLLALPAFAPTA 363
            ++  L+YG  F++ + T F P L      AA GERY +G  V   AGK  WYP  V A+R+NDTYDVR+D+G+ A HVFSH +R       S L    +  AL  AA WPL     F+ T+
Sbjct:  348 EEPELWYGREFRRQLMTYFKPELSR---PAAGGERYPVGARVACFAGKDAWYPGAVAASRENDTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTS 465
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BLAST of mRNA_P-wetherbeei_contig8574.2.1 vs. uniprot
Match: A0A6H5L3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.380e-19
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:    1 DDERLYYGLTFKKDVETRFAPRLQPLPPDAAAGERYAIGETVESTAGKGVWYPATVVAARDNDTYDVRHDDGETASHVFSHQVRRRIPRRYSPLLRLLFAGALVLAAGWPLLALPAFAPTA 363
            ++  L+YG  F++ + T F P L      AA+G RY +G  V   AGK  WYP  V A+R+N+TYDVR+D+G+ A HVFSH +R       S L    +  AL  AA WPL     F+ T+
Sbjct:  155 EEPELWYGREFRRQLMTYFKPELSR---PAASGGRYPVGARVACFAGKDAWYPGAVAASRENNTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTS 272
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BLAST of mRNA_P-wetherbeei_contig8574.2.1 vs. uniprot
Match: A0A7S3ZN40_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZN40_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.960e-5
Identity = 32/88 (36.36%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:    4 DERLYYGLTFKKDVETRFAPRLQPLPPDAAA--GERYAIGETVESTAGKGVWYPATVVAARDNDTYDVRHDDGETASHVFSHQVRRRI 261
            D  L+   +FKK V+     + +P+P       GERY +G+ VES      WYPATV     N +Y +R  +GE A  V   ++R RI
Sbjct:  606 DGMLFNDWSFKKKVK-----KFKPVPDRRMLEEGERYCVGDEVESFEHMPTWYPATVTKYNSNGSYVIRFHNGEEADAVPKSKIRYRI 688
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8574.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNQ8_ECTSI2.290e-2042.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3X8_9PHAE7.380e-1941.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3ZN40_9STRA2.960e-536.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8574contigP-wetherbeei_contig8574:1962..2736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size450
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004610.1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.9875407-CDS-P-wetherbeei_contig8574:1961..20501683187047.9875407-CDS-P-wetherbeei_contig8574:1961..2050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8574 1962..2050 -
1683187047.9987633-CDS-P-wetherbeei_contig8574:2375..27361683187047.9987633-CDS-P-wetherbeei_contig8574:2375..2736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8574 2376..2736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8574.2.1prot_P-wetherbeei_contig8574.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8574 1962..2736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8574.2.1

>prot_P-wetherbeei_contig8574.2.1 ID=prot_P-wetherbeei_contig8574.2.1|Name=mRNA_P-wetherbeei_contig8574.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
DDERLYYGLTFKKDVETRFAPRLQPLPPDAAAGERYAIGETVESTAGKGV
WYPATVVAARDNDTYDVRHDDGETASHVFSHQVRRRIPRRYSPLLRLLFA
GALVLAAGWPLLALPAFAPTAAATAALLAAAAPSEAPLTAVMTLVTAAAA
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mRNA from alignment at P-wetherbeei_contig8574:1962..2736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8574.2.1 ID=mRNA_P-wetherbeei_contig8574.2.1|Name=mRNA_P-wetherbeei_contig8574.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=775bp|location=Sequence derived from alignment at P-wetherbeei_contig8574:1962..2736- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGAACGGCTCTACTATGGGCTGACGTTCAAAAAGGATGTTGAGAC
GCGCTTCGCCCCGCGACTGCAGCCGCTGCCGCCGGACGCCGCCGCCGGTG
AACGGTACGCCATCGGCGAGACCGTGGAGAGCACGGCCGGAAAGGGCGTC
TGGTATCCGGCCACCGTTGTCGCCGCCCGCGACAACGACACATATGACGT
CCGCCACGACGACGGCGAGACCGCCAGCCACGTCTTCTCGCACCAGGTGC
GGCGGCGCATCCCCCGGCGGTACTCGCCGCTCCTCCGGCTGCTGTTCGCC
GGCGCGCTCGTGCTTGCTGCAGGGTGGCCGCTGCTGGCGCTGCCGGCCTT
CGCCCCGACGGGTAGCGGCGGCGGCGGCGGCGGCGGCACCGGCGGTAGCA
GTAGCGCCGAAAGTGGAAACAGCGGCGGAGGCGAGAAGCGGGCAGCGGCG
GCGGCAACGGCGGCGCCGGTGGCGGCGTCTGGGGCCCTGTGGCTGGCAGC
CGTATGGGCCACCTTCGGCGCCATCGCCGCCAAGGAGCCGCGCGCGGGCT
GGCGGTTTGTGACGCGCCTCGCCGTCGCCTACAGCGGACCGCCGCTCGCC
CTCCTGTGCTTGGGCGCCTTGGCCCTCCACAAGATTGCGCAGCAGCAATT
GGACTCACCGGAATCCGCCGGTGGCAGCGGCAGCAGCGGCGGCGACAGCG
GCTCTCTTGGCGGCAGCAGCTCCATCGGAGGCTCCTCTGACAGCGGTGAT
GACGTTGGTGACGGCGGCGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8574:1962..2736-

>mRNA_P-wetherbeei_contig8574.2.1 ID=mRNA_P-wetherbeei_contig8574.2.1|Name=mRNA_P-wetherbeei_contig8574.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig8574:1962..2736- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGAACGGCTCTACTATGGGCTGACGTTCAAAAAGGATGTTGAGAC
GCGCTTCGCCCCGCGACTGCAGCCGCTGCCGCCGGACGCCGCCGCCGGTG
AACGGTACGCCATCGGCGAGACCGTGGAGAGCACGGCCGGAAAGGGCGTC
TGGTATCCGGCCACCGTTGTCGCCGCCCGCGACAACGACACATATGACGT
CCGCCACGACGACGGCGAGACCGCCAGCCACGTCTTCTCGCACCAGGTGC
GGCGGCGCATCCCCCGGCGGTACTCGCCGCTCCTCCGGCTGCTGTTCGCC
GGCGCGCTCGTGCTTGCTGCAGGGTGGCCGCTGCTGGCGCTGCCGGCCTT
CGCCCCGACGGCGGCGGCGACAGCGGCTCTCTTGGCGGCAGCAGCTCCAT
CGGAGGCTCCTCTGACAGCGGTGATGACGTTGGTGACGGCGGCGGCGGCG
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