mRNA_P-wetherbeei_contig8562.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8562.2.1
Unique NamemRNA_P-wetherbeei_contig8562.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A835YUG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.600e-10
Identity = 48/103 (46.60%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:  160 AEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPP----AEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVKVEPPPA 456
            AE  FR  V E L +L+ +G+   AA+D LL  +R      P    A  EV AL    GYS QDAVRALVV +ELR+L+ +GLD   A   LT RV    PPA
Sbjct:    6 AETAFRAAVQEHLSRLMQQGMPRSAAIDTLLVAVRGQEANSPLASAAADEVAALVAAHGYSHQDAVRALVVTQELRSLREQGLDTVDALNILTSRVARAQPPA 108
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A662XMV1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMV1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.300e-7
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:   49 DKEESSSFYLSVGIQEREGKPWIPAFRFISKMEDEVQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVK 438
            D+EE      +VG + R G   + AF     +E    A+R F++ V +EL+ L+ RG +   AV LLL R+      PP  + V  +      +  DAVRAL+V++EL  LK +GLD+ AA   LTR+++
Sbjct:   16 DREEDKHPPAAVGSRPRRG---VAAFASAKMLE----AQRSFQKVVKQELETLLARGAKREDAVKLLLHRIVP-RTDPPEASAVRGVMRQFQMNYDDAVRALIVKQELGRLKRKGLDSFAAIEELTRKMQ 137
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A3R7HIA3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HIA3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.740e-7
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:  154 VQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVKVEPPPAVRE 465
            ++A+R F+  V +ELQ L+ RG +   AV LLL R+   +  PP  A V  +      +  DAVRAL+V++EL  LK +GLD+ AA   LTR++K +    V++
Sbjct:   18 LEAQRNFQSVVKQELQLLLTRGTKREVAVKLLLKRIVQ-STEPPEPAAVRGVMRQFQMNYDDAVRALIVKQELGRLKRQGLDSFAAIEELTRKMKSQEEETVQD 120
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A662XR93_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XR93_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.570e-7
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:   49 DKEESSSFYLSVGIQEREGKPWIPAFRFISKMEDEVQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVK 438
            D+EE      +VG + R G   + AF     +E    A+R F++ V +EL+ L+ RG +   AV LLL R+      PP  + V  +      +  DAVRAL+V++EL  LK +GLD+ AA   LTR+++
Sbjct:    5 DREEEKQPPPAVGSRPRRG---VAAFASAKMLE----AQRSFQKAVKQELETLLARGAKREDAVKLLLHRIVP-RTDPPEASAVRGVMRQFQMNYDDAVRALIVKQELGRLKRKGLDSFAAIEELTRKMR 126
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A329SAA0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SAA0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-6
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  154 VQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVK 438
            ++A+R F+  V +ELQ L+G G +   AV LLL R+   +  PP  A V  +      +  DAVRAL+V++EL  LK +GLD+ AA   LTR+++
Sbjct:   25 LEAQRTFQSVVKQELQMLLGSGTKREEAVKLLLRRIV-ASTEPPEAAAVRGVMRQFQMNYDDAVRALIVKQELGRLKRQGLDSFAAIEELTRKMR 118
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A484DZC9_BRELC (Uncharacterized protein n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZC9_BRELC)

HSP 1 Score: 61.2 bits (147), Expect = 1.620e-6
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:  154 VQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVK 438
            ++A+REF+  V +ELQ L+  G++   AV LLL R+   ++ PP    V  +      + +DAVRAL+V++EL  LK +GLD+ AA   LTR++K
Sbjct:   27 LEAQREFQGVVKQELQLLLTSGIRREEAVKLLLRRIV-ASLEPPDAIAVRDVVRQFQMNHEDAVRALIVKQELGRLKRQGLDSYAAIEELTRKMK 120
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A1V9ZN24_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZN24_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.030e-6
Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:  157 QAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVKVEPPPAVREQH 471
            +A+  F + V  EL  L+   V    AV +LL R+    V  P++AEV  +      SR+DAVRAL+V++EL  LKLRGLD+ AA   LTR+++ + P + R  H
Sbjct:   16 EAQEIFSRVVKAELAILLEDHVPRPVAVKILLQRIVKDMV-EPSDAEVRKVMVQFQLSREDAVRALIVKQELGRLKLRGLDSLAAIEELTRKMQRKLPLSPRLVH 119
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: M4B7U0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7U0_HYAAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.370e-6
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  154 VQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVK 438
            ++A+R F+  V  ELQ L+  G +   AV LLLGR+   +  PP    V  +      +  DAVRAL+V++EL  LK +GLD+ AA   LTR++K
Sbjct:    2 LEAQRTFQNVVKHELQLLLASGTKREDAVKLLLGRIV-ASTEPPEALAVRGVMRQFQMNCDDAVRALIVKQELGRLKRQGLDSFAAIEELTRKMK 95
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A2P4XAJ6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XAJ6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.280e-6
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  154 VQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVK 438
            ++A+R F+  V +ELQ L+  G +   AV LLL R+   +  PP  A V  +      +  DAVRAL+V++EL  LK +GLD+ AA   LTR+++
Sbjct:   25 LEAQRTFQSVVKQELQLLLTGGTKREEAVKLLLRRIV-ASTEPPEAAAVRGVMRQFQMNYDDAVRALIVKQELGRLKRQGLDSFAAIEELTRKMR 118
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BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Match: A0A6G0XQG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQG6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.310e-5
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:  154 VQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAEAEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVKV 441
            ++A+  FR+ V  ELQ L+ +G+    AV  LL R+   A   P+E+EV  +      +R DAVRAL+V++EL  LK RGLD+ AA   LT ++++
Sbjct:   20 MEAQSLFRRVVKAELQLLLDQGIARDVAVKNLLQRIVKCAT-EPSESEVRKVMYQFQMNRDDAVRALIVKQELARLKQRGLDSFAAIEELTLKMQL 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8562.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A835YUG9_9STRA6.600e-1046.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XMV1_9STRA1.300e-736.15Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3R7HIA3_9STRA2.740e-739.42Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A662XR93_9STRA6.570e-736.15Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A329SAA0_9STRA1.220e-641.05Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A484DZC9_BRELC1.620e-641.05Uncharacterized protein n=2 Tax=Bremia lactucae Ta... [more]
A0A1V9ZN24_9STRA5.030e-640.95Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
M4B7U0_HYAAE5.370e-641.05Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2P4XAJ6_9STRA7.280e-640.00Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A6G0XQG6_9STRA1.310e-540.63Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8562contigP-wetherbeei_contig8562:1375..2768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog272952.HpaP802342
Model size1394
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.1e-07
EggNOG OGs2C337@1|root,2S2SZ@2759|Eukaryota,3Q7D8@4776|Peronosporales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004550.1
Cds size1158
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.2947934-UTR-P-wetherbeei_contig8562:1374..15151683187047.2947934-UTR-P-wetherbeei_contig8562:1374..1515Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8562 1375..1515 +
1683187047.3143797-UTR-P-wetherbeei_contig8562:2673..27681683187047.3143797-UTR-P-wetherbeei_contig8562:2673..2768Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8562 2674..2768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.3053782-CDS-P-wetherbeei_contig8562:1515..26731683187047.3053782-CDS-P-wetherbeei_contig8562:1515..2673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8562 1516..2673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8562.2.1prot_P-wetherbeei_contig8562.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8562 1516..2673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8562.2.1

>prot_P-wetherbeei_contig8562.2.1 ID=prot_P-wetherbeei_contig8562.2.1|Name=mRNA_P-wetherbeei_contig8562.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=386bp
MEDEVQAEREFRQTVAEELQKLVGRGVQHGAAVDLLLGRLRDGAVMPPAE
AEVLALTTMQGYSRQDAVRALVVREELRALKLRGLDNAAATRHLTRRVKV
EPPPAVREQHLAGGCGVRSAGPLGPVQVGSASGAVGCSACAAALGTCENH
CPGRALDGAGFETGYANEDAARALFGADMDVGVGISTGGGDDNGDGGGGN
DGNGGGGGGGDRLPPLQVSTALPPVLAGWDANRALDGSSWGATDATPTHG
RGGGGGGDAKMPRSLSRKRSLDYHPMDADSGGGGGGGGGGGGFPGLCSPD
AKRHRGADGRLRVPSPHHHLHYHHHHHHIAPFGLSCSGGGGGINDFPHGC
CPAHPTGCPTKRSRSPGEDGGGGGGNGHNKRNRTA*
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mRNA from alignment at P-wetherbeei_contig8562:1375..2768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8562.2.1 ID=mRNA_P-wetherbeei_contig8562.2.1|Name=mRNA_P-wetherbeei_contig8562.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1394bp|location=Sequence derived from alignment at P-wetherbeei_contig8562:1375..2768+ (Phaeothamnion wetherbeei SAG_119_79)
GTCTCTAGCTGCAGTTTCGCTGCTTCGCTGTTGGCAGGAGAGCGTTAGGA
CAAGGAAGAGTCCTCCTCTTTCTATTTGTCAGTGGGAATTCAGGAGAGGG
AAGGAAAGCCGTGGATTCCGGCTTTCCGCTTTATCTCGAAGATGGAAGAT
GAGGTCCAAGCGGAACGAGAATTTAGGCAGACCGTGGCTGAAGAGCTGCA
AAAGCTGGTCGGGCGCGGTGTCCAGCACGGCGCAGCGGTGGACCTACTCT
TGGGACGTCTTCGCGACGGGGCAGTCATGCCGCCTGCCGAGGCTGAAGTC
CTGGCGTTGACGACGATGCAAGGCTACTCTAGACAGGACGCCGTGCGTGC
GCTTGTCGTCCGCGAAGAATTGCGCGCATTGAAACTGCGCGGCCTCGATA
ACGCCGCAGCGACACGGCATCTCACTCGCCGCGTCAAGGTGGAGCCTCCG
CCGGCCGTCCGAGAGCAGCACTTGGCAGGAGGATGCGGCGTTCGAAGCGC
TGGTCCCTTGGGCCCGGTGCAGGTGGGCAGCGCCTCAGGCGCTGTTGGCT
GCAGTGCGTGCGCCGCGGCGCTGGGCACGTGCGAGAACCATTGCCCAGGC
AGGGCGCTTGACGGTGCTGGTTTTGAAACGGGCTATGCAAACGAAGATGC
CGCGCGCGCCCTCTTTGGCGCTGACATGGACGTTGGCGTCGGTATCAGCA
CCGGCGGGGGCGACGACAACGGCGACGGCGGTGGAGGCAACGACGGCAAC
GGCGGCGGCGGCGGCGGCGGCGACCGGCTGCCACCGCTGCAGGTCAGTAC
GGCGCTGCCACCGGTCCTCGCCGGCTGGGACGCAAACCGGGCCCTGGATG
GGTCCTCGTGGGGAGCCACCGACGCGACACCAACGCACGGCAGAGGCGGC
GGCGGCGGCGGCGACGCCAAGATGCCGCGGAGCTTGTCGCGGAAACGGAG
CCTAGACTACCACCCCATGGATGCCGACTCCGGTGGCGGCGGTGGCGGCG
GCGGCGGCGGCGGTGGCTTCCCGGGGCTCTGCTCGCCCGATGCCAAACGC
CACCGCGGCGCTGACGGACGCCTCAGGGTGCCGTCTCCGCACCACCACTT
GCATTACCACCACCACCACCACCACATTGCGCCGTTTGGACTCAGCTGCA
GCGGCGGCGGCGGCGGCATCAACGACTTCCCGCACGGCTGCTGCCCGGCC
CACCCGACCGGGTGTCCGACCAAGCGCAGCCGCTCTCCGGGCGAGGACGG
CGGAGGCGGCGGCGGCAACGGGCATAACAAGCGCAACCGGACGGCGTGAG
AGAAGAGAATGGGCATCACTTTGAAGCTCTTGAACGGCGGGCGGCGGCAT
TTATGTGGTGAGACATGACCGAAGGCTTAATGAAGCGAGACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8562:1375..2768+

>mRNA_P-wetherbeei_contig8562.2.1 ID=mRNA_P-wetherbeei_contig8562.2.1|Name=mRNA_P-wetherbeei_contig8562.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig8562:1375..2768+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGATGAGGTCCAAGCGGAACGAGAATTTAGGCAGACCGTGGCTGA
AGAGCTGCAAAAGCTGGTCGGGCGCGGTGTCCAGCACGGCGCAGCGGTGG
ACCTACTCTTGGGACGTCTTCGCGACGGGGCAGTCATGCCGCCTGCCGAG
GCTGAAGTCCTGGCGTTGACGACGATGCAAGGCTACTCTAGACAGGACGC
CGTGCGTGCGCTTGTCGTCCGCGAAGAATTGCGCGCATTGAAACTGCGCG
GCCTCGATAACGCCGCAGCGACACGGCATCTCACTCGCCGCGTCAAGGTG
GAGCCTCCGCCGGCCGTCCGAGAGCAGCACTTGGCAGGAGGATGCGGCGT
TCGAAGCGCTGGTCCCTTGGGCCCGGTGCAGGTGGGCAGCGCCTCAGGCG
CTGTTGGCTGCAGTGCGTGCGCCGCGGCGCTGGGCACGTGCGAGAACCAT
TGCCCAGGCAGGGCGCTTGACGGTGCTGGTTTTGAAACGGGCTATGCAAA
CGAAGATGCCGCGCGCGCCCTCTTTGGCGCTGACATGGACGTTGGCGTCG
GTATCAGCACCGGCGGGGGCGACGACAACGGCGACGGCGGTGGAGGCAAC
GACGGCAACGGCGGCGGCGGCGGCGGCGGCGACCGGCTGCCACCGCTGCA
GGTCAGTACGGCGCTGCCACCGGTCCTCGCCGGCTGGGACGCAAACCGGG
CCCTGGATGGGTCCTCGTGGGGAGCCACCGACGCGACACCAACGCACGGC
AGAGGCGGCGGCGGCGGCGGCGACGCCAAGATGCCGCGGAGCTTGTCGCG
GAAACGGAGCCTAGACTACCACCCCATGGATGCCGACTCCGGTGGCGGCG
GTGGCGGCGGCGGCGGCGGCGGTGGCTTCCCGGGGCTCTGCTCGCCCGAT
GCCAAACGCCACCGCGGCGCTGACGGACGCCTCAGGGTGCCGTCTCCGCA
CCACCACTTGCATTACCACCACCACCACCACCACATTGCGCCGTTTGGAC
TCAGCTGCAGCGGCGGCGGCGGCGGCATCAACGACTTCCCGCACGGCTGC
TGCCCGGCCCACCCGACCGGGTGTCCGACCAAGCGCAGCCGCTCTCCGGG
CGAGGACGGCGGAGGCGGCGGCGGCAACGGGCATAACAAGCGCAACCGGA
CGGCGTGA
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