mRNA_P-wetherbeei_contig8557.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8557.1.1
Unique NamemRNA_P-wetherbeei_contig8557.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: UPI00199565A2 (FkbM family methyltransferase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI00199565A2)

HSP 1 Score: 359 bits (922), Expect = 1.680e-119
Identity = 170/252 (67.46%), Postives = 212/252 (84.13%), Query Frame = 1 
Query:    1 LSLAEYELLEPHQTVDDGVTEVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            L+L +YE ++P + V D   EV YATPNV T+WRVD+LF+KEP+TIEWI GF+ADEV +D+GANVG+YTIWAAKTRGVR +AFEPESQNYA+L +NIVLN L++ V AYC AL+D AGYSLLHL+QFQ G S HS+GEKV++ LE+RD+++SQGC++ TLD+LV +GV+P P+HIKIDVDG EHKVL G   +LAD  L+SVL+EINTNLE HR+I+TDM+A GF YSE+QVA+A RTEG F G+GNYVF R
Sbjct:    5 LTLEQYETMDPQRCVRDRGVEVIYATPNVATEWRVDTLFSKEPETIEWIAGFQADEVLIDVGANVGIYTIWAAKTRGVRVYAFEPESQNYAVLYKNIVLNQLSKQVVAYCAALTDEAGYSLLHLNQFQAGRSNHSYGEKVDYQLEYRDSEVSQGCVAATLDSLVKTGVVPMPDHIKIDVDGFEHKVLTGSASILADRHLRSVLIEINTNLEQHRKIVTDMRAYGFTYSEEQVARALRTEGPFSGIGNYVFSR 256
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: A0A4R6WWE0_9PROT (FkbM family methyltransferase n=2 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WWE0_9PROT)

HSP 1 Score: 274 bits (701), Expect = 6.290e-86
Identity = 141/270 (52.22%), Postives = 171/270 (63.33%), Query Frame = 1 
Query:    7 LAEYELLEPHQTVDDGVTEVA--------------------YATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            LAE E   P+  +D  V E                      YA P     WRV +LFTKEP TIEW+   +     +D+GANVGMYT++AA  R  R FAFEPESQNYALLCRNIV N L+E VTA+C ALSD A +S +HLS F IG SCHSF E V+  LE R +   QGC S  +D L+A GV+P P+HIK+DVDG EHKV+AG  E L +P +KS+++EIN +L  HR I+  +  LGF Y   QVA+A RTEGAF GVG YVF R
Sbjct:    5 LAETEPRRPNMQIDPRVIEAVKRYDAGMPVIGIPYKGKKLRYALPGKTPLWRVQTLFTKEPSTIEWLESIEMGGTLLDVGANVGMYTVFAAVIRDARVFAFEPESQNYALLCRNIVSNSLSERVTAFCCALSDEAKFSTIHLSDFTIGGSCHSFDESVDFKLEQRKSPFIQGCFSARIDQLIADGVMPVPSHIKLDVDGFEHKVIAGAAETLRNPAVKSLIIEINPHLAEHRGILDHLSELGFSYDPAQVARAARTEGAFTGVGEYVFRR 274
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: UPI00199A42C9 (FkbM family methyltransferase n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI00199A42C9)

HSP 1 Score: 269 bits (688), Expect = 2.710e-84
Identity = 136/254 (53.54%), Postives = 174/254 (68.50%), Query Frame = 1 
Query:    1 LSLAEYELLEPHQTVDDGVTEVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTK--LSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            ++L +YE L P   V  G  +V YATP++ TKWRVD+LF KEP T+EWI GF+  EV VD+GANVGMYT+WAA+TRGVR +AFEPES NYALL RNIV NGL   V AYC ALSD +G+  LHLSQF  G SCHS  EK++    HR  K   +QGC+S ++D LV +G +  P++IKIDVDG E KV+ G  E +    L+S+L+E+N NL  H  ++ ++ ALGF +   QV +A+R  G F G   YVF R
Sbjct:    1 MNLEDYEKLNPRCVVRSGDIDVVYATPSLATKWRVDTLFEKEPVTLEWIAGFQQGEVLVDVGANVGMYTVWAARTRGVRVYAFEPESLNYALLNRNIVANGLAGQVMAYCAALSDRSGFGELHLSQFMAGGSCHSLDEKMDP--YHRPAKPVYTQGCVSTSVDELVRAGRVDPPHYIKIDVDGFEPKVVLGAAETVRSGTLRSLLIEVNQNLPDHMEMVRELNALGFRHDPAQVERAERKSGPFTGCAEYVFKR 252
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: A0A3N5X944_9PROT (FkbM family methyltransferase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5X944_9PROT)

HSP 1 Score: 269 bits (687), Expect = 4.090e-84
Identity = 128/252 (50.79%), Postives = 173/252 (68.65%), Query Frame = 1 
Query:    1 LSLAEYELLEPHQTVDDGVTEVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            L+L +YE L P   ++     + ++TP   T+WRV+S+ +KEP T+EWI  F+ DE+ +D GANVGMYT+WAA TR VR +AFEPESQNYALL RNI  N L   V AYC+ LSD +G   LH++  ++G SCH+ GE ++   +    +  QGC++ TLD LVA G +P PNHIKIDVDG E KV+AG R  LADPR++S+L+E N NLE HR ++ ++ ALG  +   QV +A+R +G FKGV  +VF R
Sbjct:    3 LTLEQYEQLNPRCEIEHDGVNMVFSTPGTLTRWRVESIHSKEPWTLEWIASFQPDEILLDCGANVGMYTVWAAATRRVRVYAFEPESQNYALLNRNIQNNRLQHRVKAYCMGLSDQSGLFDLHMADMRVGGSCHAVGEALDFEHKPLQAQFVQGCVAGTLDELVAGGAVPVPNHIKIDVDGFEPKVIAGARATLADPRVRSLLIETNPNLEDHRAMVRELNALGLLHDPAQVRRAERKDGTFKGVAEHVFRR 254
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: A0A7C7CG52_9FLAO (FkbM family methyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7CG52_9FLAO)

HSP 1 Score: 269 bits (687), Expect = 4.230e-84
Identity = 131/252 (51.98%), Postives = 173/252 (68.65%), Query Frame = 1 
Query:    1 LSLAEYELLEPHQTVDDGVTEVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            ++L +YE ++P   +  G   V++ TP+   KWRV++L +KEP TIEWI  FK DE+ +DIGANVGMYTIWAA+TRG + FAFEPESQNYALL RNIV+N L   V AYC A+SD+ G+  L+L +F  GSS ++FGEK++          SQGC S T+D LV SGVLP P ++KIDVDG+E KV+ G +E + D   KS+LVEIN NLE H   +  ++  GF +S+ QV  + R +G FKG+  YVF R
Sbjct:    3 ITLKQYESIDPIYQLSIGNVSVSFCTPSEGMKWRVETLLSKEPATIEWISEFKRDEILLDIGANVGMYTIWAAQTRGAKVFAFEPESQNYALLNRNIVINQLGNQVCAYCTAISDTVGFDYLYLGRFSAGSSANTFGEKIDFKYRPLHPAYSQGCFSTTIDHLVTSGVLPIPQYMKIDVDGLEPKVIRGAKETIKDENFKSILVEINQNLEDHMETVKFLENCGFVFSQDQVDSSTRKDGPFKGIAEYVFRR 254
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: A0A1Y0I9F6_9GAMM (FkbM family methyltransferase n=1 Tax=Oleiphilus messinensis TaxID=141451 RepID=A0A1Y0I9F6_9GAMM)

HSP 1 Score: 272 bits (695), Expect = 1.320e-81
Identity = 129/233 (55.36%), Postives = 170/233 (72.96%), Query Frame = 1 
Query:   58 TEVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            TE+ Y   N   KWR +SL+TKEPDT+ WI  FK ++V VDIGANVGMYT+ AAK  G R +AFEPESQNYALL RNIV N + +   A+C+AL+D +    L+LS F +G SCH+FG+ ++ NL+ R T L+QGC+S  LD LVA GV+P P+HIKIDVDG+EH VL G  + +++P+LKS+LVE+NTNL  H+ +I  +  LGF + ++QV  A R EG FKGVGN++F R
Sbjct:   16 TELIYEASNDMVKWRAESLYTKEPDTVVWISQFKENDVLVDIGANVGMYTVLAAKGMGARVYAFEPESQNYALLNRNIVYNQIQDKCVAFCMALTDESKVDRLYLSTFGLGGSCHTFGQDIDFNLQQRSTHLAQGCVSFQLDELVAKGVIPQPDHIKIDVDGLEHCVLQGALDAISNPKLKSILVELNTNLPEHQSLINQLAELGFVFDQRQVGVAIRQEGTFKGVGNFIFYR 248
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: B1XXZ0_LEPCP (Methyltransferase FkbM family n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) TaxID=395495 RepID=B1XXZ0_LEPCP)

HSP 1 Score: 268 bits (684), Expect = 2.410e-78
Identity = 137/261 (52.49%), Postives = 181/261 (69.35%), Query Frame = 1 
Query:   43 VDDGVTEVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR*RTRDVPDRQRADTRVSVRAYLR 825
            VDD    + + TPN  T+WRV+SLFTKEPDTI W++  K+ EV VD+GANVGMY+++ A  RGV+  AFEPESQNYALL  NI LNGL+  V AY LALSD++G   L+LS F  G SCHSFGE+V  +L+ R +  +QG  S TLD LV++G +P P+HIK+DVDG EHKV+AG    L DP++K+VLVE+NT+L+ HR++I  +  LGF +  QQ   A R  GAF+GVG ++F R   + V   QR   R+ + +  R
Sbjct:  207 VDDK--RLKFHTPNRMTQWRVESLFTKEPDTIAWLKQMKSGEVLVDVGANVGMYSVFGAVCRGVQVHAFEPESQNYALLNSNIALNGLSGRVVAYPLALSDTSGADKLYLSDFSPGGSCHSFGEQVGFDLKPRGSAFAQGAFSVTLDQLVSAGSVPVPDHIKLDVDGFEHKVIAGALTTLRDPKVKTVLVELNTHLDEHRQVIQTLHELGFSHDPQQAQGALRASGAFEGVGEFIFTRQLEKKVELIQRTTLRLPMSSRAR 465
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: A0A2E6X5L8_9PROT (Methyltransferase FkbM n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E6X5L8_9PROT)

HSP 1 Score: 254 bits (648), Expect = 3.050e-78
Identity = 126/252 (50.00%), Postives = 170/252 (67.46%), Query Frame = 1 
Query:    1 LSLAEYELLEPHQTVDDGVTEVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            +++ EYE LEP  T+     EV Y  PN  T WR +SL +KEPDT+ WI  F A++V  D+GANVGMY+IWAA T+     AFEPE+QNYA+L +NI LN L E   AY +ALSD  G+  LHLS F IG SCH+FGE ++H L+ R + L QG  S T+D +++S  +P P  IKIDVDGIEHKV+ G ++ L D R++S+LVE+NTNL +H  +I  ++  GF    + +  + R +G FKGVGN++F R
Sbjct:    4 MTIEEYEKLEPIFTLKYKNVEVLYNVPNRQTLWRAESLNSKEPDTLAWIDNFDAEDVLFDVGANVGMYSIWAAATKKCSVVAFEPEAQNYAILNKNIGLNNLRESTIAYPVALSDGTGFGDLHLSDFVIGGSCHTFGEALDHRLQPRKSWLRQGSFSTTIDRIISSKSVPFPTQIKIDVDGIEHKVIEGAKKTLKDDRVRSILVELNTNLSIHNNLIKSLERKGFRLWRETLDISIRKKGEFKGVGNHIFQR 255
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: A0A2S6TCY1_9PROT (Methyltransf_21 domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin3 TaxID=2013069 RepID=A0A2S6TCY1_9PROT)

HSP 1 Score: 259 bits (661), Expect = 1.930e-75
Identity = 121/232 (52.16%), Postives = 161/232 (69.40%), Query Frame = 1 
Query:   61 EVAYATPNVFTKWRVDSLFTKEPDTIEWIRGFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLNGLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTKLSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLKSVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVFVR 756
            ++ Y TPN  TKWRVDS FTKEPDTI WI     +E+ +D+GANVGMYTI A+  RG++ FAFEPESQNY+LL RNI LNG+++ VTAYC  LSD +G    +LS F +G SCH+ GE ++ NL  +     QGC   TLD ++ S  +P P HIKIDVDG EHKV+ G ++ L  P +KSVL+E+N +LE HR +   M+ LG+ Y E Q  ++++ +GAF G+GN +F R
Sbjct:  168 DLCYHTPNRMTKWRVDSFFTKEPDTIRWISCMTDEEILLDVGANVGMYTIMASVGRGLKVFAFEPESQNYSLLNRNIYLNGVSDLVTAYCAGLSDHSGLDKFYLSNFSLGGSCHAVGESLDFNLIPQQADYVQGCTVYTLDEMIESNAIPVPTHIKIDVDGFEHKVITGMQKTLTKPEVKSVLIELNPHLEEHRGLFQKMEELGYRYFESQAEESRQPDGAFAGIGNVIFYR 399
[Close]
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Match: UPI0019AC2E28 (Uncharacterized protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019AC2E28)

HSP 1 Score: 239 bits (611), Expect = 1.000e-72
Identity = 113/237 (47.68%), Postives = 156/237 (65.82%), Query Frame = 2 
Query:  743 MSSSAEEHVMYQIANAPIREYPYAHIYVENVFPDDFYAAMRASWPDQSALITIADTGRVAKGAYPERFVMPFNQSEVNKLNEAHRPFWNELASWLITQRFLTAMIDKFEPYVKERFGDELYECVFENDSLIVRDLTNYSIGPHTDSPSRLLSMLFYCPPDETHKHLGTSLYVPCDPAFRCAGGPHYPHQLFHKVRTMEYKPNSLFAFVKNDHSFHGVEPIGDQNVLRDILLYDIRVR 1453
            MSSSAE+H +YQIANAP+RE+PY HI V  VF  D Y  M+ +      +  I +   V K    +R V    + ++  L + HR FW+EL  WL+   F   + +KF  ++ ERFGD   +  F N++L+V D   YS+GPH+D+PS+++++LFY P D++  HLGTS+Y P DP+FRC GGPHYP  LF +V TM Y  N+LFAFVK D+SFHGVEPI D++  R +LLYD++ R
Sbjct:    1 MSSSAEQHTLYQIANAPLREHPYPHILVHEVFEPDLYRRMQENLLPPELMRPIKEERAVGKAYSDDRHVFTLAKDKIGALPQPHRAFWDELTGWLLNAPFAVTLFNKFGRHIHERFGDP--QPPFYNEALLVDDRVRYSLGPHSDTPSKVITLLFYLPADDSRSHLGTSIYTPRDPSFRCPGGPHYPFDLFDRVVTMPYVSNTLFAFVKTDNSFHGVEPIRDKDYRRHLLLYDVKCR 235
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8557.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199565A21.680e-11967.46FkbM family methyltransferase n=1 Tax=Pyrinomonada... [more]
A0A4R6WWE0_9PROT6.290e-8652.22FkbM family methyltransferase n=2 Tax=Dongia mobil... [more]
UPI00199A42C92.710e-8453.54FkbM family methyltransferase n=1 Tax=Candidatus P... [more]
A0A3N5X944_9PROT4.090e-8450.79FkbM family methyltransferase n=1 Tax=Betaproteoba... [more]
A0A7C7CG52_9FLAO4.230e-8451.98FkbM family methyltransferase n=1 Tax=Flavobacteri... [more]
A0A1Y0I9F6_9GAMM1.320e-8155.36FkbM family methyltransferase n=1 Tax=Oleiphilus m... [more]
B1XXZ0_LEPCP2.410e-7852.49Methyltransferase FkbM family n=1 Tax=Leptothrix c... [more]
A0A2E6X5L8_9PROT3.050e-7850.00Methyltransferase FkbM n=1 Tax=Magnetovibrio sp. T... [more]
A0A2S6TCY1_9PROT1.930e-7552.16Methyltransf_21 domain-containing protein (Fragmen... [more]
UPI0019AC2E281.000e-7247.68Uncharacterized protein n=1 Tax=Candidatus Parcuba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8557contigP-wetherbeei_contig8557:181..1642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog395495.Lcho_0484
PFAMsGlycos_transf_2,Methyltransf_11,Methyltransf_21,Methyltransf_23,Methyltransf_25
Model size1462
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.59e-81
EggNOG OGsCOG2227@1|root,COG2520@1|root,COG2227@2|Bacteria,COG2520@2|Bacteria
DescriptiontRNA (guanine(37)-N(1))-methyltransferase activity
Cds size759
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187046.912742-CDS-P-wetherbeei_contig8557:180..9391683187046.912742-CDS-P-wetherbeei_contig8557:180..939Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8557 181..939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187046.9241862-UTR-P-wetherbeei_contig8557:939..16421683187046.9241862-UTR-P-wetherbeei_contig8557:939..1642Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8557 940..1642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8557.1.1prot_P-wetherbeei_contig8557.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8557 181..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8557.1.1

>prot_P-wetherbeei_contig8557.1.1 ID=prot_P-wetherbeei_contig8557.1.1|Name=mRNA_P-wetherbeei_contig8557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
LSLAEYELLEPHQTVDDGVTEVAYATPNVFTKWRVDSLFTKEPDTIEWIR
GFKADEVFVDIGANVGMYTIWAAKTRGVRTFAFEPESQNYALLCRNIVLN
GLTEYVTAYCLALSDSAGYSLLHLSQFQIGSSCHSFGEKVNHNLEHRDTK
LSQGCISNTLDALVASGVLPTPNHIKIDVDGIEHKVLAGCREVLADPRLK
SVLVEINTNLELHRRIITDMKALGFDYSEQQVAQAQRTEGAFKGVGNYVF
VR*
back to top

mRNA from alignment at P-wetherbeei_contig8557:181..1642+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8557.1.1 ID=mRNA_P-wetherbeei_contig8557.1.1|Name=mRNA_P-wetherbeei_contig8557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1462bp|location=Sequence derived from alignment at P-wetherbeei_contig8557:181..1642+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCGCTCGCCGAATACGAATTGCTGGAGCCGCACCAGACTGTCGATGA
CGGCGTGACGGAGGTCGCTTATGCGACTCCCAACGTATTCACCAAATGGC
GCGTGGATTCGCTGTTTACCAAGGAACCCGACACCATCGAATGGATCAGG
GGGTTTAAGGCGGATGAGGTTTTCGTCGACATCGGCGCCAACGTCGGCAT
GTACACGATATGGGCCGCCAAGACCCGCGGGGTGCGCACTTTCGCATTTG
AGCCGGAGTCGCAGAACTACGCCCTGCTTTGCCGCAATATAGTGCTCAAC
GGGTTGACTGAATATGTCACCGCCTACTGCCTTGCGCTGAGCGACTCCGC
CGGTTATTCGCTCCTGCATCTGAGCCAGTTTCAGATCGGCAGTTCGTGTC
ACTCGTTCGGCGAGAAGGTTAACCACAATCTCGAGCACCGCGACACCAAA
CTTTCGCAAGGCTGCATCTCGAATACGCTCGATGCGCTGGTGGCGAGCGG
CGTGCTGCCGACGCCCAATCACATCAAGATCGATGTGGACGGAATCGAGC
ACAAGGTGCTCGCCGGTTGCCGCGAGGTACTCGCCGACCCCAGGCTGAAA
TCGGTGCTGGTGGAAATCAACACCAACCTGGAGCTACACCGTAGAATAAT
TACCGATATGAAAGCGCTCGGGTTCGACTATTCCGAGCAGCAGGTGGCGC
AGGCGCAACGCACTGAAGGCGCATTCAAGGGCGTCGGGAACTATGTCTTC
GTCCGCTGAAGAACACGTGATGTACCAGATCGCCAACGCGCCGATACGCG
AGTATCCGTACGCGCATATCTACGTTGAGAACGTATTCCCGGATGATTTC
TACGCGGCAATGCGCGCCAGCTGGCCTGACCAATCCGCGCTGATCACTAT
TGCCGACACCGGGCGGGTAGCCAAGGGCGCGTACCCCGAGCGCTTTGTCA
TGCCGTTCAACCAATCCGAGGTCAACAAGCTCAATGAAGCTCACCGCCCC
TTCTGGAACGAACTGGCGAGCTGGTTGATCACGCAACGATTTTTGACCGC
AATGATAGACAAGTTCGAACCATACGTTAAAGAACGGTTCGGAGATGAGT
TGTACGAGTGTGTTTTCGAAAACGATTCGCTCATTGTGCGCGACCTGACC
AATTACAGCATCGGTCCACACACCGATTCACCGAGCCGCCTGCTGTCAAT
GCTGTTTTACTGTCCACCTGACGAAACGCACAAACACCTCGGCACTTCAC
TTTATGTGCCGTGCGATCCTGCATTCCGGTGCGCGGGCGGTCCGCATTAC
CCCCACCAGCTCTTCCACAAAGTCCGCACCATGGAATACAAACCCAACTC
GCTGTTCGCTTTCGTCAAAAACGACCACTCGTTTCACGGCGTGGAGCCGA
TTGGCGATCAAAACGTGCTGCGCGACATCCTGCTCTACGACATCCGCGTG
CGGCGGCCCAAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8557:181..1642+

>mRNA_P-wetherbeei_contig8557.1.1 ID=mRNA_P-wetherbeei_contig8557.1.1|Name=mRNA_P-wetherbeei_contig8557.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig8557:181..1642+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCGCTCGCCGAATACGAATTGCTGGAGCCGCACCAGACTGTCGATGA
CGGCGTGACGGAGGTCGCTTATGCGACTCCCAACGTATTCACCAAATGGC
GCGTGGATTCGCTGTTTACCAAGGAACCCGACACCATCGAATGGATCAGG
GGGTTTAAGGCGGATGAGGTTTTCGTCGACATCGGCGCCAACGTCGGCAT
GTACACGATATGGGCCGCCAAGACCCGCGGGGTGCGCACTTTCGCATTTG
AGCCGGAGTCGCAGAACTACGCCCTGCTTTGCCGCAATATAGTGCTCAAC
GGGTTGACTGAATATGTCACCGCCTACTGCCTTGCGCTGAGCGACTCCGC
CGGTTATTCGCTCCTGCATCTGAGCCAGTTTCAGATCGGCAGTTCGTGTC
ACTCGTTCGGCGAGAAGGTTAACCACAATCTCGAGCACCGCGACACCAAA
CTTTCGCAAGGCTGCATCTCGAATACGCTCGATGCGCTGGTGGCGAGCGG
CGTGCTGCCGACGCCCAATCACATCAAGATCGATGTGGACGGAATCGAGC
ACAAGGTGCTCGCCGGTTGCCGCGAGGTACTCGCCGACCCCAGGCTGAAA
TCGGTGCTGGTGGAAATCAACACCAACCTGGAGCTACACCGTAGAATAAT
TACCGATATGAAAGCGCTCGGGTTCGACTATTCCGAGCAGCAGGTGGCGC
AGGCGCAACGCACTGAAGGCGCATTCAAGGGCGTCGGGAACTATGTCTTC
GTCCGCTGA
back to top