mRNA_P-wetherbeei_contig8525.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8525.1.1
Unique NamemRNA_P-wetherbeei_contig8525.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8525.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8525contigP-wetherbeei_contig8525:539..1068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size511
Hectar predicted targeting categorymitochondrion
Exons2
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187045.0817835-UTR-P-wetherbeei_contig8525:538..6591683187045.0817835-UTR-P-wetherbeei_contig8525:538..659Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8525 539..659 -
1683187045.1066532-UTR-P-wetherbeei_contig8525:1050..10681683187045.1066532-UTR-P-wetherbeei_contig8525:1050..1068Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8525 1051..1068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187045.0906794-CDS-P-wetherbeei_contig8525:659..8651683187045.0906794-CDS-P-wetherbeei_contig8525:659..865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8525 660..865 -
1683187045.0986912-CDS-P-wetherbeei_contig8525:884..10501683187045.0986912-CDS-P-wetherbeei_contig8525:884..1050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8525 885..1050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8525.1.1prot_P-wetherbeei_contig8525.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8525 660..1050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8525.1.1

>prot_P-wetherbeei_contig8525.1.1 ID=prot_P-wetherbeei_contig8525.1.1|Name=mRNA_P-wetherbeei_contig8525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MRFVRGLACSRVNTTLAVSCIARREYKILPFLVVGSACCCPPTDSLLLLS
AERFLDSWNWKEPTGRHSFCLVELKRDRRYLDTDISNSDLALLVLCGCSK
PRATTLKRTNHRFLSPTGTASAS*
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mRNA from alignment at P-wetherbeei_contig8525:539..1068-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8525.1.1 ID=mRNA_P-wetherbeei_contig8525.1.1|Name=mRNA_P-wetherbeei_contig8525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=530bp|location=Sequence derived from alignment at P-wetherbeei_contig8525:539..1068- (Phaeothamnion wetherbeei SAG_119_79)
GCTAATAAGGGGGTTCGAATGAGATTTGTGCGGGGACTGGCGTGCAGCCG
CGTCAATACAACTCTCGCCGTGTCGTGCATTGCTCGCAGAGAATATAAAA
TCCTGCCCTTCTTGGTGGTTGGTTCTGCCTGCTGCTGCCCGCCGACCGAC
AGTCTCTTGCTTCTTTCAGCTGAAAGGTTCCTTGCTGCCTTCTGTCTGGT
TCTATTCATGGAACTGGAAGGAACCGACGGGACGCCATTCCTTTTGTTTG
GTAGAGTTAAAACGTGACCGGCGTTATCTTGATACCGATATTTCAAATAG
CGATTTGGCTTTGTTGGTACTCTGCGGTTGTAGTAAGCCACGCGCCACCA
CCCTCAAACGAACAAATCACAGGTTCCTTTCCCCAACTGGTACAGCGTCG
GCTTCGTAGTGCACGGCAAGCGACAGGGTTGGCAGCGACAGTGGCAACGG
CGGCGGCGCGCAACGCGCGAATGGAGTGCGGCAGCGGGCTATTTTGACAG
CGATGCTGTGTTTAAGGGCATACGCCTCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8525:539..1068-

>mRNA_P-wetherbeei_contig8525.1.1 ID=mRNA_P-wetherbeei_contig8525.1.1|Name=mRNA_P-wetherbeei_contig8525.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig8525:539..1068- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATTTGTGCGGGGACTGGCGTGCAGCCGCGTCAATACAACTCTCGC
CGTGTCGTGCATTGCTCGCAGAGAATATAAAATCCTGCCCTTCTTGGTGG
TTGGTTCTGCCTGCTGCTGCCCGCCGACCGACAGTCTCTTGCTTCTTTCA
GCTGAAAGGTTCCTTGATTCATGGAACTGGAAGGAACCGACGGGACGCCA
TTCCTTTTGTTTGGTAGAGTTAAAACGTGACCGGCGTTATCTTGATACCG
ATATTTCAAATAGCGATTTGGCTTTGTTGGTACTCTGCGGTTGTAGTAAG
CCACGCGCCACCACCCTCAAACGAACAAATCACAGGTTCCTTTCCCCAAC
TGGTACAGCGTCGGCTTCGTAG
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