mRNA_P-wetherbeei_contig8518.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8518.2.1
Unique NamemRNA_P-wetherbeei_contig8518.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A835YYF6_9STRA (DNA repair metallo-beta-lactamase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.860e-14
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 3 
Query:  180 QLVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFIGTM 362
            QL+PYSEHSN+ ELVEFV FL+P+ V+PTVFSD +DR+ I+RRFA  +D  A  RAF  +M
Sbjct:  161 QLIPYSEHSNYTELVEFVTFLKPRLVIPTVFSDENDRKAIIRRFAPLLDHNANKRAFFASM 221
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A7S4DF74_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF74_HETAK)

HSP 1 Score: 79.0 bits (193), Expect = 1.010e-12
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3 
Query:  183 LVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFIGTM 362
            LVPYSEHSNF ELVEF+RF++P++V+PTVFSDA D   +V+RF   +D TA  R F   M
Sbjct:   40 LVPYSEHSNFEELVEFIRFIKPRQVIPTVFSDAKDSARMVKRFQSYIDHTANKRTFFHKM 99
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A7S2SCG2_9STRA (DNA ligase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SCG2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.830e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3 
Query:  174 CTQLVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFIGTMTRG 371
            C +L+ YSEHS+F  L  FV FLRP++++PTV+SD   RQ IV RF +CVD+ A  RAFI + ++G
Sbjct:  314 CVRLIAYSEHSDFEGLQTFVSFLRPRQIVPTVYSDEKHRQKIVHRFRNCVDQMANKRAFIASFSKG 379
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A7S0DGP3_9EUKA (DNA ligase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGP3_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 2.940e-11
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:  165 NITCTQLVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFIGTMT 365
            NIT  +++PYSEHSNF ELV+FV+ LRP  ++PTVFSDA+DRQ I  RF+   D     R F+ T++
Sbjct:  316 NIT-VRIIPYSEHSNFPELVQFVKALRPVHIVPTVFSDAADRQRIKNRFSRLTDSNTIKRRFLSTIS 381
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A7S4UDV2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UDV2_GUITH)

HSP 1 Score: 73.6 bits (179), Expect = 1.270e-10
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  186 VPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFIGTMTRG 371
            VPYSEHSN+ ELVEFV FLRP+ V PTVF+D   R+ ++ RF+  VD  A  +AF+ +M  G
Sbjct:  328 VPYSEHSNYNELVEFVEFLRPRNVFPTVFTDEKARRTMISRFSRYVDSNAVKKAFVTSMFAG 389
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A830H9C1_9CHLO (DNA ligase n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H9C1_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 1.650e-10
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:  183 LVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFIGTMTR 368
            LVPYSEHS+F EL E+V+FLRP EV PTVF+D  DR+ IV RF   VD T+A + F+  M +
Sbjct:  423 LVPYSEHSSFTELREYVKFLRPVEVRPTVFADEGDRRRIVARFRDLVDTTSAKQFFLQGMAK 484
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A7R9TSY1_9VIRI (DNA ligase n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TSY1_9VIRI)

HSP 1 Score: 70.5 bits (171), Expect = 2.160e-9
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:  183 LVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFIGTMTRG 371
            LVPYSEHS+F EL ++V+FL+P  + PTV+S+  +   IV RF   VD T A  AF+G+MT G
Sbjct:  355 LVPYSEHSSFEELRQYVKFLKPVRIRPTVYSNERESDRIVARFRDLVDSTGAKHAFLGSMTAG 417
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A2P6V7L2_9CHLO (DNA ligase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V7L2_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 4.030e-9
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3 
Query:  183 LVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASD----RQNIVRRFAHCVDRTAAARAFIGTMTRGNSCGDG 389
            LVPYSEHS++ EL E+VRFLRPQ+V+PTV  D +D    R+ + + F   VD TA+   F+G   RG S G G
Sbjct:  952 LVPYSEHSSWSELQEYVRFLRPQQVIPTVGVDGADADRARERMQKEFRLLVDETASKAKFLGLFQRGGSSGGG 1024
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A4D9D1N4_9STRA (DRMBL domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1N4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.020e-8
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:  180 QLVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFI 353
            QL+PYSEH+ F +L++FV +LRP+ V+PTV+SDA ++  I+RRF   +D     RAF+
Sbjct:  436 QLIPYSEHTPFADLLDFVGYLRPRRVVPTVWSDAKEKDRILRRFRGVLDDAEGKRAFL 493
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BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Match: A0A7S3H108_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H108_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.090e-7
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 3 
Query:  198 EHSNFLELVEFVRFLRPQEVLPTVFSDASDRQNIVRRFAHCVDRTAAARAFI 353
            EHSN  EL+EFV FL+P+EV+PTVFSD  +R  I+  F +CVDR +  R FI
Sbjct:    1 EHSNCNELIEFVTFLKPREVIPTVFSDEKNRLFILDLFRNCVDRVSNMRNFI 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8518.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYF6_9STRA3.860e-1462.30DNA repair metallo-beta-lactamase-domain-containin... [more]
A0A7S4DF74_HETAK1.010e-1260.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SCG2_9STRA8.830e-1253.03DNA ligase n=1 Tax=labyrinthulid quahog parasite Q... [more]
A0A7S0DGP3_9EUKA2.940e-1153.73DNA ligase n=1 Tax=Amorphochlora amoebiformis TaxI... [more]
A0A7S4UDV2_GUITH1.270e-1054.84Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A830H9C1_9CHLO1.650e-1058.06DNA ligase n=1 Tax=Pycnococcus provasolii TaxID=41... [more]
A0A7R9TSY1_9VIRI2.160e-952.38DNA ligase n=1 Tax=Prasinoderma coloniale TaxID=15... [more]
A0A2P6V7L2_9CHLO4.030e-950.68DNA ligase n=1 Tax=Micractinium conductrix TaxID=5... [more]
A0A4D9D1N4_9STRA2.020e-850.00DRMBL domain-containing protein n=3 Tax=Monodopsid... [more]
A0A7S3H108_9STRA1.090e-757.69Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8518contigP-wetherbeei_contig8518:1264..2388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_86217
PFAMsDNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N,DRMBL
Model size1125
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K10747,ko:K15340
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000726,GO:0002237,GO:0003006,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006303,GO:0006304,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009791,GO:0009845,GO:0009987,GO:0010033,GO:0010154,GO:0010225,GO:0010243,GO:0015074,GO:0016070,GO:0016874,GO:0016886,GO:0018130,GO:0019438,GO:0022414,GO:0022616,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035510,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044728,GO:0046483,GO:0046677,GO:0048316,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051704,GO:0051707,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0070988,GO:0071704,GO:0071897,GO:0080111,GO:0090304,GO:0090351,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1904975,GO:2000683,GO:2000685
Exons1
Evalue8.65e-09
EggNOG OGsCOG1236@1|root,COG1793@1|root,KOG0967@2759|Eukaryota,KOG1361@2759|Eukaryota
EC6.5.1.1,6.5.1.6,6.5.1.7
Descriptionprotection from non-homologous end joining at telomere
Cds size966
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.7717142-UTR-P-wetherbeei_contig8518:1263..14061683187044.7717142-UTR-P-wetherbeei_contig8518:1263..1406Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8518 1264..1406 +
1683187044.7949557-UTR-P-wetherbeei_contig8518:2372..23881683187044.7949557-UTR-P-wetherbeei_contig8518:2372..2388Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8518 2373..2388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.7828624-CDS-P-wetherbeei_contig8518:1406..23721683187044.7828624-CDS-P-wetherbeei_contig8518:1406..2372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8518 1407..2372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8518.2.1prot_P-wetherbeei_contig8518.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8518 1407..2372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8518.2.1

>prot_P-wetherbeei_contig8518.2.1 ID=prot_P-wetherbeei_contig8518.2.1|Name=mRNA_P-wetherbeei_contig8518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=322bp
MPLSCPANITCTQLVPYSEHSNFLELVEFVRFLRPQEVLPTVFSDASDRQ
NIVRRFAHCVDRTAAARAFIGTMTRGNSCGDGVGGAIGGATSVSGVSSGG
RGNTSRNGSHFTGAAKYASLSNEPDSPGPGSPAPAALEASAAAGALAGSS
TMETIEIDDAVANAAADAATATTQPAPWVCLACTFKHRSPREAAFLQCGV
CCTPRAAPANSVGGTTAAGAAAEESGCRGAGVNNVGSPAAAKSAAGARAG
KKADQVTPSPAGAKRKAGSGGKGGGSGSGDGSGRSRCGGGSEKHGGNKQG
KTIGHFFAKQRADGRSEHITK*
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mRNA from alignment at P-wetherbeei_contig8518:1264..2388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8518.2.1 ID=mRNA_P-wetherbeei_contig8518.2.1|Name=mRNA_P-wetherbeei_contig8518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1125bp|location=Sequence derived from alignment at P-wetherbeei_contig8518:1264..2388+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGGAAAGTTCTACTTGGCGCCCTATCCTTCTTAGCAACTACCTTCCAT
TTCTACGCGCTCTCTAGCGATAAACGCTCCTTCTCGCCGTCTTTACCGGC
TGCCGTACCGCCGTTTCCGTTTCTCCTGCCATTCCGGTGCCGAATGCCGC
TTTCCTGCCCGGCAAACATTACTTGCACGCAGCTGGTGCCGTATTCGGAG
CACTCTAACTTCTTGGAGCTGGTGGAATTTGTGCGCTTCCTGCGGCCCCA
GGAGGTGCTGCCGACCGTCTTTTCCGACGCCAGCGACCGCCAGAACATCG
TCCGCCGGTTCGCCCACTGCGTCGACCGCACCGCTGCCGCGCGGGCATTC
ATCGGCACCATGACGCGCGGCAACAGCTGTGGCGATGGCGTCGGTGGCGC
AATTGGCGGCGCAACCAGCGTTAGCGGCGTGAGCAGCGGTGGCAGGGGCA
ACACCAGCCGCAATGGCAGCCATTTCACCGGTGCCGCAAAGTACGCATCT
CTTTCGAACGAGCCAGATTCTCCCGGGCCGGGATCGCCTGCGCCGGCTGC
TTTGGAGGCGTCTGCCGCAGCGGGGGCCCTGGCGGGCAGCAGCACAATGG
AAACAATCGAGATAGATGACGCTGTCGCCAATGCGGCGGCGGACGCCGCG
ACTGCGACTACGCAGCCAGCGCCGTGGGTGTGCCTGGCCTGCACCTTCAA
GCACCGGTCGCCCCGCGAGGCGGCGTTTTTGCAGTGCGGTGTGTGCTGCA
CGCCGCGGGCGGCGCCGGCCAACAGCGTCGGTGGCACGACCGCTGCGGGG
GCGGCGGCGGAGGAGTCAGGCTGTCGTGGCGCCGGTGTGAATAATGTAGG
AAGCCCTGCTGCTGCGAAGTCGGCGGCAGGAGCGAGAGCGGGGAAAAAAG
CTGACCAAGTGACGCCATCGCCGGCTGGCGCGAAGCGAAAGGCTGGCAGC
GGCGGCAAGGGCGGCGGGAGTGGGAGCGGAGACGGCAGCGGGCGCAGCCG
ATGCGGTGGCGGGAGTGAGAAGCACGGCGGCAACAAGCAAGGCAAAACCA
TTGGTCATTTCTTCGCGAAGCAACGGGCAGACGGGAGGTCCGAGCATATC
ACAAAATAGAGAATTAACTTTGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8518:1264..2388+

>mRNA_P-wetherbeei_contig8518.2.1 ID=mRNA_P-wetherbeei_contig8518.2.1|Name=mRNA_P-wetherbeei_contig8518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig8518:1264..2388+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTTTCCTGCCCGGCAAACATTACTTGCACGCAGCTGGTGCCGTA
TTCGGAGCACTCTAACTTCTTGGAGCTGGTGGAATTTGTGCGCTTCCTGC
GGCCCCAGGAGGTGCTGCCGACCGTCTTTTCCGACGCCAGCGACCGCCAG
AACATCGTCCGCCGGTTCGCCCACTGCGTCGACCGCACCGCTGCCGCGCG
GGCATTCATCGGCACCATGACGCGCGGCAACAGCTGTGGCGATGGCGTCG
GTGGCGCAATTGGCGGCGCAACCAGCGTTAGCGGCGTGAGCAGCGGTGGC
AGGGGCAACACCAGCCGCAATGGCAGCCATTTCACCGGTGCCGCAAAGTA
CGCATCTCTTTCGAACGAGCCAGATTCTCCCGGGCCGGGATCGCCTGCGC
CGGCTGCTTTGGAGGCGTCTGCCGCAGCGGGGGCCCTGGCGGGCAGCAGC
ACAATGGAAACAATCGAGATAGATGACGCTGTCGCCAATGCGGCGGCGGA
CGCCGCGACTGCGACTACGCAGCCAGCGCCGTGGGTGTGCCTGGCCTGCA
CCTTCAAGCACCGGTCGCCCCGCGAGGCGGCGTTTTTGCAGTGCGGTGTG
TGCTGCACGCCGCGGGCGGCGCCGGCCAACAGCGTCGGTGGCACGACCGC
TGCGGGGGCGGCGGCGGAGGAGTCAGGCTGTCGTGGCGCCGGTGTGAATA
ATGTAGGAAGCCCTGCTGCTGCGAAGTCGGCGGCAGGAGCGAGAGCGGGG
AAAAAAGCTGACCAAGTGACGCCATCGCCGGCTGGCGCGAAGCGAAAGGC
TGGCAGCGGCGGCAAGGGCGGCGGGAGTGGGAGCGGAGACGGCAGCGGGC
GCAGCCGATGCGGTGGCGGGAGTGAGAAGCACGGCGGCAACAAGCAAGGC
AAAACCATTGGTCATTTCTTCGCGAAGCAACGGGCAGACGGGAGGTCCGA
GCATATCACAAAATAG
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