mRNA_P-wetherbeei_contig8499.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE) HSP 1 Score: 218 bits (556), Expect = 9.130e-60 Identity = 181/437 (41.42%), Postives = 231/437 (52.86%), Query Frame = 1
Query: 1 DMGVQTDSGSDFLARSRWLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLLQKSLERSISTCSEQAIMAVCNRITEIVEPEAPLPSFYAGLCAKL--RSPLKPRTAAASGVDGGGSSTVADLSAALAR------ALEEAVDEAGRDDGGPAAIGCVGGGAAGCGSGIXXXXVXXXXXXXXXXALHELVVMANSAHVALMAMRSVEAAMRSHLEGDNNLVQLMLEQMGRLLAAYTALRDSHLAEVLERTYPPVAKALRHGFAAGVQAVDSAAFEKAALEVPPAAVAGALATILEGPLAGECRRGMIPDVYELLLEGLAKAIAAELSALILAPNGGCGNGAIVGGGGTXXXXXXXXXXXXXXGGSGARYNEWGALLLQRGVRAVQQQLAELFNGVALTGHFAKVNQLLLILNLERPADVVNYCIPP 1287
D+G+ D S+F A+ R EG YVQLEDAYCL SV EA+RIAEPIEV DG VSSMVED FL+ KSL RS+ST SEQAIMAVCNR+TEI++P AP PSFY GL + R P+ + G D S ALA+ ALEEA DE GP G GGAAG +G V +V NS HVAL ++ +++ A+ LE N LV LML+++ R+L +Y LRDS L +VLE PPV+ A+ + F + A+ A +E + ++P A AT + G G XXXXXXXXXXXXXX G + EWGALLL++ VR +QQ LA L +L+ F +N+L+ +LN ERPAD ++Y PP
Sbjct: 386 DLGLPEDQSSEFYAQVRLTEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFYGGLATEADHRVPVGGGEGGRGDGEKGSDQQPNDFSTALAKWDCGGWALEEAADE----HSGPRGEGSGNGGAAGIWAGEGFGEVEGA------------MVGINSVHVALSSVSAIQDALNRFLEASNPLVGLMLDEVARILRSYKELRDSRLNDVLEALSPPVSSAIANAFGSSSYALGPAQYELRSGDLPGARRVLHAAT---RAMTGSDSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--FTEWGALLLRKEVRTLQQGLAALMETDSLSTEFGDLNELVRLLNFERPADALDYRPPP 801
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: D8LT95_ECTSI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT95_ECTSI) HSP 1 Score: 204 bits (518), Expect = 6.820e-57 Identity = 174/448 (38.84%), Postives = 229/448 (51.12%), Query Frame = 1
Query: 1 DMGVQTDSGSDFLARSRWLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLLQKSLERSISTCSEQAIMAVCNRITEIVEPEAPLPSFYAGLCAKL--RSPLKPRTAAASGVDGGGSSTVADLSAALARALEEAVDEAGRDDGGPAAIGCVGGGAAGCGSGIXXXXVXXXXXXXXXXALHELVVMANSAHVALMAMRSVEAAMRSHLEGDNNLVQLMLEQMGRLLAAYTALRDSHLAEVLERTYPPVAKALRHGFAAGVQAVDSAAFEKAALEVPPA-----------------AVAGALATILEGPLAGECRRGMIPDVYELLLEGLAKAIAAELSALILAPNGGCGNGAIVGGGGTXXXXXXXXXXXXXXGGSGARYNEWGALLLQRGVRAVQQQLAELFNGVALTGHFAKVNQLLLILNLERPADVVNYCIPP 1287
D+G+ D S+F A+ R +EG YVQLEDAYCL SV EA+RIAEPIEV DG VSSMVED FL+ KSL RS+ST SEQAIMAVCNR+TEI++P AP PSF+ GL + R P+ GGG XXXX XXXXXXXXXX + +V NS HVAL ++ +++ A+ LE N LV LML+++ R+L +Y LRDS L +VLE PPV+ AL + F + A+ A +E + ++P A +G G CR ++ + +E L+ LA +AA + A G XXXXXX + EWGALLL++ VR +QQ LA L +L F +N+L+ +LN ERPAD ++Y PP
Sbjct: 18 DLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHRVPV-----------GGGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXVEGAMVGINSVHVALSSVSAIQDALNRFLEASNPLVGLMLDEVARILRSYKDLRDSRLNDVLEALSPPVSSALANAFGSSSYALGPAQYELRSGDLPGARRVLHAATRAMTGSDNSGESGGXXXXXXXXADGGCRAALLQEPFEELVRRLASRVAAGVEMAARAKGHGX-------------------XXXXXXXXXXXXFTEWGALLLRKEVRTLQQGLAALMETDSLNMEFGDLNELVRLLNFERPADALDYRPPP 430
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: A0A7S3XW30_HETAK (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW30_HETAK) HSP 1 Score: 109 bits (272), Expect = 1.350e-22 Identity = 83/262 (31.68%), Postives = 128/262 (48.85%), Query Frame = 1
Query: 4 MGVQTDSGSDFLARSRWLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLLQKSLERSISTCSEQAIMAVCNRITEIVEPEAPL------PSFYAGLCA----KLRSPLKPRTAAASGVDGGGSSTVA---------DLSAAL-ARALEEAVDEAGRDDGGPAAIGCVGGGAAGCGSGIXXXXVXXXXXXXXXXALHELVVMANSAHVALMAMRSVEAAMRSHLEGDNNLVQLMLEQMGRLLAAYTALRD 729
M + D + + + L G ++ +ED YC +V A+ ++EPIEV G+ S++VED FL++KSLER++STCS+QA MAV NR+ E+++P+ PSFYA L A + + L + AAA+ GG+ V DL+ AL A A+EE +A R D + NSAHVA+ ++ ++ M +L+ ++ LVQ ML+ R++ Y AL D
Sbjct: 124 MTIGHDEQGELYGKLQQLIGTFISVEDLYCQLNVRRAIELSEPIEVQPGVYCSTLVEDAFFLVKKSLERTLSTCSDQATMAVSNRLAELLDPQQAAAGGEGAPSFYAALRAMGDVRPQEVLAEKRAAAAAQGEGGAGKVPGAEAPPAPPDLAQALLAAAIEEEESKALRVD--------------------------------------SIAFQINSAHVAISSITAMRDMMSEYLDAESPLVQTMLDDFRRIMEPYQALVD 347
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: A0A836CHF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF9_9STRA) HSP 1 Score: 105 bits (263), Expect = 8.270e-21 Identity = 86/255 (33.73%), Postives = 114/255 (44.71%), Query Frame = 1
Query: 571 ELVVMANSAHVALMAMRSVEAAMRSHLEGDNNLVQLMLEQMGRLLA----------------------AYTALRDSHLAEVL-ERTYPPVAKALRHGFAA-GVQAVDSAAFEKAALEVPPAAVAGALATILEGPLAGECRRGMIPDVYELLLEGLAKAIAAELSALILAPNGGCGNGAIVGGGGTXXXXXXXXXXXXXXGGSGARYNEWGALLLQRGVRAVQQQLAELFNGVALTGHFAKVNQLLLILNLERPAD 1263
+LVVMANSAH A + +V AA+ L LV ++EQ+ AY LRD HLA +L E YPP+A+ LR G A +D+ +E A PAA A A A EGPL CR G+ V+ LL + A + A++ A +L EWGALLLQR VR +QQ+L L G LT F+++ Q++ +L LERPAD
Sbjct: 450 DLVVMANSAHFAAHSAAAVRAAIAGRLREGAPLVVALMEQVAAAQVCXXXXXXXXXXXXXXXXXXXQRAYEQLRDEHLACLLREAAYPPLAEVLRRGACARACYDIDADGYEAAVAAGAPAAAALATAAD-EGPLGAACRAGLDSGVFALLAQAAAARLCADVEAAVLGXX------------------------------XXXXVTEWGALLLQREVRVLQQRLGALVEGGTLTAQFSRLQQVVQLLTLERPAD 673
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: W7TYV3_9STRA (Conserved oligomeric Golgi complex subunit 4 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYV3_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.110e-20 Identity = 114/430 (26.51%), Postives = 189/430 (43.95%), Query Frame = 1
Query: 31 DFLARSRWLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLLQKSLERSISTCSEQAIMAVCNRITEIVEPEAPLPSFYAGLCAKLRSPLKPRTAAASGVDGGGSSTVADLSAALARALEEAVDEAGRDDGGPAAIGCVGGGAAGCGSGIXXXXVXXXXXXXXXXALHELVVMA-NSAHVALMAMRSV-----EAAMRSHLEGDN--------NLVQLMLEQMGRLLAAYTALRDSHLAEVLERTYPP-VAKALRHGFAAGVQAVDSAAFEK-AALEVPPAAVAGALATILEGPLAGECRRGMIPDVYELLLEGLAKAIAAELS-ALILAPNGGCGNGAIVGGGGTXXXXXXXXXXXXXXGGSGARYNEWGALLLQRGVRAVQQQLAELFNGVA-LTGHFAKVNQLLLILNLERPADV 1266
D + + L G YV +E AYC +VA+A+ +P EV +G+ VS++VED +L +S+ER+ T S+QAI+AV +R TE++ P++ +PSF A L A + + +GV+ GG + +RAL++ +DE ++G HE ++ A NS A+ AM+ + E +R EG++ ++V+ + ++ GR+L Y + L + R + L +D+ +EK AA P ++ + +C+ GM L G + +A LS ALI A + EWG + L++ VR +Q+QL EL +G L FA+V+Q++ +LNL+ PADV
Sbjct: 360 DLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDS-VPSFAAALQALVED------RSLTGVEAGGGAMDQ-----FSRALQQQLDE---EEG---------------------------------NVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSGILDYLSQVVGRTNYTIDATTYEKEAAGRGDPFVTQFLDYMFVKDKVLRDCKAGMTGSA----LLGFVERVAMSLSPALIQALEE-------------------------------KEFTEWGGMKLRQQVRLLQEQLMELVDGHGTLLPQFARVDQMVTLLNLDSPADV 706
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: W7TI94_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI94_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 8.430e-14 Identity = 51/137 (37.23%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 31 DFLARSRWLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGICVSSMVEDGGFLLQKSLERSISTCSEQAIMAVCNRITEIVEPEAPLPSFYAGLCAKLRSPLKPRTAAASGVDGGGSSTVADLSAALARALEEAVDE 441
D + + L G YV +E AYC +VA+A+ +P EV +G+ VS++VED +L +S+ER+ T S+QAI+AV +R TE++ P++ +PSF A L A + + +GV+ GG + +RAL++ +DE
Sbjct: 360 DLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDS-VPSFAAALQALVED------RSLTGVEAGGGAMDQ-----FSRALQQQLDE 484
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: A0A7S1XX70_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX70_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.160e-9 Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 61 GVYVQLEDAYCLASVAEAVRIAEPIEVADGI-CVSSMVEDGGFLLQKSLERSISTCSEQAIMAVCNRITEIVEPEAPLPSFYAGLC------AKLRSPLKPR 345
GVYV LE+ + A++ +A+ I+ V DG VS++ ED F+L+KS+ R++ST QAIMAV NR+ E+++P + P YA L A+LR+ K R
Sbjct: 177 GVYVTLEETFLGANIKKALSISRMRRVGDGARFVSTLAEDAFFILKKSMGRALSTGDTQAIMAVTNRVAEMLDPASAEPLIYAALTDATELIAQLRAERKAR 278
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Match: A0A7S2FSW2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSW2_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 4.480e-5 Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 1102 SGARYNEWGALLLQRGVRAVQQQLAELFNGV--ALTGHFAKVNQLLLILNLERPADVVNY 1275
+G R NEWGALLLQR VR +++ L+ G +L FA++ Q LL+LNLERPA++ Y
Sbjct: 221 TGLRVNEWGALLLQREVRDLERLLSAYLVGSPHSLNPKFARLEQALLLLNLERPAEISMY 280 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8499.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8499.2.1 >prot_P-wetherbeei_contig8499.2.1 ID=prot_P-wetherbeei_contig8499.2.1|Name=mRNA_P-wetherbeei_contig8499.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=428bp MGVQTDSGSDFLARSRWLEGVYVQLEDAYCLASVAEAVRIAEPIEVADGIback to top mRNA from alignment at P-wetherbeei_contig8499:967..2783- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8499.2.1 ID=mRNA_P-wetherbeei_contig8499.2.1|Name=mRNA_P-wetherbeei_contig8499.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1817bp|location=Sequence derived from alignment at P-wetherbeei_contig8499:967..2783- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8499:967..2783- >mRNA_P-wetherbeei_contig8499.2.1 ID=mRNA_P-wetherbeei_contig8499.2.1|Name=mRNA_P-wetherbeei_contig8499.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig8499:967..2783- (Phaeothamnion wetherbeei SAG_119_79)back to top |