|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2607 |
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Cds size | 2523 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683187042.638924-UTR-P-wetherbeei_contig848:74..129 | 1683187042.638924-UTR-P-wetherbeei_contig848:74..129 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig848 75..129 + |
| 1683187042.666409-UTR-P-wetherbeei_contig848:3031..3060 | 1683187042.666409-UTR-P-wetherbeei_contig848:3031..3060 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig848 3032..3060 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683187042.6486785-CDS-P-wetherbeei_contig848:129..568 | 1683187042.6486785-CDS-P-wetherbeei_contig848:129..568 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig848 130..568 + |
| 1683187042.6573756-CDS-P-wetherbeei_contig848:947..3031 | 1683187042.6573756-CDS-P-wetherbeei_contig848:947..3031 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig848 948..3031 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig848.1.1 >prot_P-wetherbeei_contig848.1.1 ID=prot_P-wetherbeei_contig848.1.1|Name=mRNA_P-wetherbeei_contig848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=841bp
MKLIGSSSVVLVAPFLAGCAGFIASPQLPLLSPMWRKGECSNIFTCSHRS
GTPRIASAGPSSGLEGGRSDDYIAKLEAAIERVDDELGELRVEEKLIRDG
LLRSEGPYAGKDETFVGSQLVAVQQKEESLRREKEILSVKMTHANEVRQR
FMKALSWQEWLQARGWWRAAGEDDKQRLLAIMPTGMALPFVDRGMQLDEM
KQFLRAGYGPRCKGIWPRMPILYFQASPGVGKTRLLLELCRSCNGSETAA
PFYFLPVSFSGLTPIASPEHGIARRFHDPLPLLILRLVFSEACSMASVSW
TAFVSTAALSIASGELTFSKNFSSMAIKALLSARGVGDDFPTIVFLVDEI
TKLELLGADAADEMRRSLCLVADELWASVVFSTLNDTTITNEHMTSYREI
CLLPLPLLDVNEAAQALETALRNTTIEWRLPEADVDATLLKSLAQWLAAA
ALGHGRTMEYAVRSFDDEVESQRAGWMAGSAFDIEPVMRTTISRLANLHS
AHVRAGNELVQAAILGKRVWGDDVAFSDNGVDVSWSDCLRRGILQGCLPG
KSDCAFVPQLSLFSMGAIGKASGLSGGLGSHLDAILRTSGGRGRVCPPAA
FETAHARWECMVRLCRSAAGFRNITLAELYLGRHGVGGLAGTSGSRLLHS
VRIVADSATPLDCKVYDHLRTLCRPLPGQGTERAMLASNVWQPRDERQPG
FDLVMFYQMHATDDDSASEETPKKLLPVAFQLKWSQADSSKTLTSVEVDK
AVVSTRRQFAAVGWNEEVDEIPVIFVCWGGVSEPVAAAAPTNCLFLNRTS
LEGLYGPSLAPFMSALEKGHRLVAPFRGGEVPAEKDDKSI* back to topmRNA from alignment at P-wetherbeei_contig848:75..3060+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig848.1.1 ID=mRNA_P-wetherbeei_contig848.1.1|Name=mRNA_P-wetherbeei_contig848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2986bp|location=Sequence derived from alignment at P-wetherbeei_contig848:75..3060+ (Phaeothamnion wetherbeei SAG_119_79)
CCTTAAACCGGGTCACCCACTGTACTCACCATATCTTCAGCCCCTCTTCA
AGACTATGAAGCTCATAGGCTCCTCCAGCGTGGTTCTCGTGGCCCCCTTC
TTAGCGGGCTGTGCGGGCTTTATCGCCTCGCCTCAGCTTCCCTTGTTGTC
GCCCATGTGGCGCAAGGGTGAATGCTCCAATATCTTCACGTGCAGCCACC
GCAGCGGAACGCCTAGAATCGCAAGCGCTGGCCCCTCCAGCGGACTGGAA
GGGGGACGGAGCGATGACTATATTGCAAAATTGGAGGCCGCGATCGAACG
CGTCGACGACGAGCTGGGCGAACTGCGCGTGGAGGAGAAGCTCATCAGGG
ACGGCCTTCTTCGGAGCGAGGGCCCCTACGCCGGCAAGGACGAGACATTC
GTGGGAAGCCAGCTCGTGGCCGTGCAGCAGAAAGAAGAGAGCCTGCGGCG
GGAAAAAGAGATCCTTTCCGTGAAGATGACCCATGCCAACGAAGGTGCGT
TCGGGAAGATTGAACTCCGCAAGATCCGGCCTTGTCCCAGATTCAACGTT
TGCTTGCACGTTCCGGTAATGATCAGAATTCCTTCCATGTTGCCGCCCAT
AATCTTGCGCCGTGATCTTGTGAACACGACAGCCACAAGCTCAGGTTTCT
ATTAAGTTATAATTATTGTCGAGGCTCCTGATGGTTGTCCGTCTCTATGC
ACCTGGCTCACCATGGCCGTGCCTTCACCCCTTCCAGCTTCCTCCGTCCG
CCACGCTGCCGCCGTTGGCACGCCGGAAGCACCCTTGCCGTTTTCACTAA
CCACGACGTCGTGACTGCCGCTGCTGGCCACGCTTCCGTCCCGTGGATTG
TGCTATTTTCTCTCCAATCGTAGTGAGACAGCGCTTCATGAAGGCGCTTA
GCTGGCAAGAATGGCTTCAGGCACGCGGCTGGTGGCGTGCGGCAGGTGAA
GACGACAAGCAGCGCCTCCTGGCAATTATGCCAACAGGAATGGCCCTGCC
ATTCGTCGACCGTGGCATGCAGCTAGATGAGATGAAGCAGTTTTTGAGGG
CGGGTTATGGACCCAGGTGCAAGGGGATATGGCCGCGGATGCCGATATTG
TATTTCCAAGCTTCTCCCGGCGTCGGGAAAACACGGCTGCTGCTCGAGCT
GTGCCGAAGCTGCAACGGGTCCGAGACGGCGGCGCCGTTCTACTTCTTGC
CCGTGAGCTTCAGCGGCCTGACTCCAATCGCTTCGCCCGAGCACGGCATC
GCGCGCCGCTTCCACGACCCCTTGCCTCTCTTGATTCTGCGGCTGGTGTT
TTCCGAGGCTTGCTCGATGGCGAGCGTTTCATGGACGGCCTTCGTTTCGA
CAGCCGCCCTTTCCATCGCATCTGGCGAGCTCACGTTCTCTAAGAACTTC
AGTAGCATGGCGATCAAAGCCTTGCTGTCGGCGAGAGGGGTCGGCGACGA
TTTTCCAACAATAGTCTTTCTGGTCGACGAAATCACCAAGTTGGAGCTAC
TTGGCGCAGACGCGGCGGATGAGATGCGCCGCAGCCTCTGCCTCGTCGCC
GACGAGCTGTGGGCGTCCGTGGTCTTCTCGACGCTGAATGACACCACGAT
CACGAACGAGCACATGACGTCATACCGCGAAATTTGTCTGCTCCCCTTGC
CCCTACTGGATGTGAACGAGGCGGCCCAGGCTCTAGAAACGGCGCTGCGG
AATACAACCATTGAGTGGCGGCTGCCCGAGGCTGACGTTGACGCAACTCT
GCTGAAGTCCCTGGCGCAATGGCTCGCTGCCGCGGCTCTCGGCCACGGCA
GGACGATGGAGTACGCCGTCCGCTCTTTCGACGACGAGGTGGAAAGCCAG
CGAGCGGGGTGGATGGCAGGCAGCGCGTTCGACATTGAACCCGTAATGCG
GACGACGATCTCGCGACTGGCCAATCTCCACAGTGCGCACGTGCGAGCGG
GAAATGAATTGGTACAAGCTGCAATTCTGGGGAAACGAGTGTGGGGCGAC
GACGTTGCTTTTTCGGACAACGGCGTCGACGTGTCGTGGTCCGACTGCTT
AAGGCGAGGCATTCTTCAAGGCTGCTTGCCCGGCAAGAGCGACTGTGCAT
TTGTACCGCAGCTTTCGCTCTTTTCGATGGGTGCTATCGGTAAGGCCAGC
GGTCTTTCTGGCGGCCTCGGCTCTCATCTGGACGCTATCCTTCGAACAAG
CGGCGGCAGAGGGAGAGTCTGCCCGCCGGCGGCATTTGAAACGGCGCACG
CTCGATGGGAGTGCATGGTGCGTCTTTGCCGCTCGGCAGCTGGGTTCCGC
AACATCACCCTGGCAGAACTTTACCTGGGCCGGCACGGTGTGGGGGGATT
GGCTGGCACTTCGGGCAGCCGACTTCTGCACTCGGTCAGGATCGTCGCGG
ATTCTGCGACCCCGCTGGACTGCAAAGTGTACGATCATCTCCGAACGCTT
TGCCGCCCGTTGCCGGGCCAAGGTACGGAAAGAGCAATGCTTGCAAGTAA
CGTGTGGCAGCCCAGGGACGAGCGGCAGCCCGGGTTTGACCTCGTGATGT
TCTACCAAATGCATGCGACCGACGATGATTCTGCCAGCGAGGAGACTCCG
AAGAAGCTCCTGCCGGTGGCCTTCCAGCTCAAATGGAGCCAGGCCGACTC
CAGCAAGACGCTTACTTCGGTTGAAGTCGACAAGGCCGTCGTCAGCACGC
GGCGCCAGTTCGCGGCGGTCGGATGGAATGAGGAAGTCGACGAAATCCCT
GTCATTTTTGTATGCTGGGGGGGCGTGTCGGAGCCGGTGGCGGCGGCGGC
GCCGACAAATTGCCTCTTTTTGAACCGGACGTCCCTGGAGGGGCTGTATG
GTCCCAGCCTCGCGCCGTTCATGAGCGCGCTGGAAAAGGGCCATCGCCTC
GTCGCTCCGTTTAGGGGAGGGGAAGTACCGGCGGAGAAGGACGACAAGAG
CATTTGAAGATGTAAAGAGAGAATGTATTCATTTTC back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig848:75..3060+ >mRNA_P-wetherbeei_contig848.1.1 ID=mRNA_P-wetherbeei_contig848.1.1|Name=mRNA_P-wetherbeei_contig848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2523bp|location=Sequence derived from alignment at P-wetherbeei_contig848:75..3060+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCTCATAGGCTCCTCCAGCGTGGTTCTCGTGGCCCCCTTCTTAGC
GGGCTGTGCGGGCTTTATCGCCTCGCCTCAGCTTCCCTTGTTGTCGCCCA
TGTGGCGCAAGGGTGAATGCTCCAATATCTTCACGTGCAGCCACCGCAGC
GGAACGCCTAGAATCGCAAGCGCTGGCCCCTCCAGCGGACTGGAAGGGGG
ACGGAGCGATGACTATATTGCAAAATTGGAGGCCGCGATCGAACGCGTCG
ACGACGAGCTGGGCGAACTGCGCGTGGAGGAGAAGCTCATCAGGGACGGC
CTTCTTCGGAGCGAGGGCCCCTACGCCGGCAAGGACGAGACATTCGTGGG
AAGCCAGCTCGTGGCCGTGCAGCAGAAAGAAGAGAGCCTGCGGCGGGAAA
AAGAGATCCTTTCCGTGAAGATGACCCATGCCAACGAAGTGAGACAGCGC
TTCATGAAGGCGCTTAGCTGGCAAGAATGGCTTCAGGCACGCGGCTGGTG
GCGTGCGGCAGGTGAAGACGACAAGCAGCGCCTCCTGGCAATTATGCCAA
CAGGAATGGCCCTGCCATTCGTCGACCGTGGCATGCAGCTAGATGAGATG
AAGCAGTTTTTGAGGGCGGGTTATGGACCCAGGTGCAAGGGGATATGGCC
GCGGATGCCGATATTGTATTTCCAAGCTTCTCCCGGCGTCGGGAAAACAC
GGCTGCTGCTCGAGCTGTGCCGAAGCTGCAACGGGTCCGAGACGGCGGCG
CCGTTCTACTTCTTGCCCGTGAGCTTCAGCGGCCTGACTCCAATCGCTTC
GCCCGAGCACGGCATCGCGCGCCGCTTCCACGACCCCTTGCCTCTCTTGA
TTCTGCGGCTGGTGTTTTCCGAGGCTTGCTCGATGGCGAGCGTTTCATGG
ACGGCCTTCGTTTCGACAGCCGCCCTTTCCATCGCATCTGGCGAGCTCAC
GTTCTCTAAGAACTTCAGTAGCATGGCGATCAAAGCCTTGCTGTCGGCGA
GAGGGGTCGGCGACGATTTTCCAACAATAGTCTTTCTGGTCGACGAAATC
ACCAAGTTGGAGCTACTTGGCGCAGACGCGGCGGATGAGATGCGCCGCAG
CCTCTGCCTCGTCGCCGACGAGCTGTGGGCGTCCGTGGTCTTCTCGACGC
TGAATGACACCACGATCACGAACGAGCACATGACGTCATACCGCGAAATT
TGTCTGCTCCCCTTGCCCCTACTGGATGTGAACGAGGCGGCCCAGGCTCT
AGAAACGGCGCTGCGGAATACAACCATTGAGTGGCGGCTGCCCGAGGCTG
ACGTTGACGCAACTCTGCTGAAGTCCCTGGCGCAATGGCTCGCTGCCGCG
GCTCTCGGCCACGGCAGGACGATGGAGTACGCCGTCCGCTCTTTCGACGA
CGAGGTGGAAAGCCAGCGAGCGGGGTGGATGGCAGGCAGCGCGTTCGACA
TTGAACCCGTAATGCGGACGACGATCTCGCGACTGGCCAATCTCCACAGT
GCGCACGTGCGAGCGGGAAATGAATTGGTACAAGCTGCAATTCTGGGGAA
ACGAGTGTGGGGCGACGACGTTGCTTTTTCGGACAACGGCGTCGACGTGT
CGTGGTCCGACTGCTTAAGGCGAGGCATTCTTCAAGGCTGCTTGCCCGGC
AAGAGCGACTGTGCATTTGTACCGCAGCTTTCGCTCTTTTCGATGGGTGC
TATCGGTAAGGCCAGCGGTCTTTCTGGCGGCCTCGGCTCTCATCTGGACG
CTATCCTTCGAACAAGCGGCGGCAGAGGGAGAGTCTGCCCGCCGGCGGCA
TTTGAAACGGCGCACGCTCGATGGGAGTGCATGGTGCGTCTTTGCCGCTC
GGCAGCTGGGTTCCGCAACATCACCCTGGCAGAACTTTACCTGGGCCGGC
ACGGTGTGGGGGGATTGGCTGGCACTTCGGGCAGCCGACTTCTGCACTCG
GTCAGGATCGTCGCGGATTCTGCGACCCCGCTGGACTGCAAAGTGTACGA
TCATCTCCGAACGCTTTGCCGCCCGTTGCCGGGCCAAGGTACGGAAAGAG
CAATGCTTGCAAGTAACGTGTGGCAGCCCAGGGACGAGCGGCAGCCCGGG
TTTGACCTCGTGATGTTCTACCAAATGCATGCGACCGACGATGATTCTGC
CAGCGAGGAGACTCCGAAGAAGCTCCTGCCGGTGGCCTTCCAGCTCAAAT
GGAGCCAGGCCGACTCCAGCAAGACGCTTACTTCGGTTGAAGTCGACAAG
GCCGTCGTCAGCACGCGGCGCCAGTTCGCGGCGGTCGGATGGAATGAGGA
AGTCGACGAAATCCCTGTCATTTTTGTATGCTGGGGGGGCGTGTCGGAGC
CGGTGGCGGCGGCGGCGCCGACAAATTGCCTCTTTTTGAACCGGACGTCC
CTGGAGGGGCTGTATGGTCCCAGCCTCGCGCCGTTCATGAGCGCGCTGGA
AAAGGGCCATCGCCTCGTCGCTCCGTTTAGGGGAGGGGAAGTACCGGCGG
AGAAGGACGACAAGAGCATTTGA back to top
|