mRNA_P-wetherbeei_contig8471.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8471.1.1
Unique NamemRNA_P-wetherbeei_contig8471.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8471.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8471contigP-wetherbeei_contig8471:539..1552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1014
Hectar predicted targeting categoryother localisation
Exons1
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.2967362-UTR-P-wetherbeei_contig8471:538..9221683187042.2967362-UTR-P-wetherbeei_contig8471:538..922Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8471 539..922 -
1683187042.3145795-UTR-P-wetherbeei_contig8471:1459..15521683187042.3145795-UTR-P-wetherbeei_contig8471:1459..1552Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8471 1460..1552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.3060274-CDS-P-wetherbeei_contig8471:922..14591683187042.3060274-CDS-P-wetherbeei_contig8471:922..1459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8471 923..1459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8471.1.1prot_P-wetherbeei_contig8471.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8471 923..1459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8471.1.1

>prot_P-wetherbeei_contig8471.1.1 ID=prot_P-wetherbeei_contig8471.1.1|Name=mRNA_P-wetherbeei_contig8471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
MSFESQLCCQYRAMPAAKFSPVCPLRDREGFGRMTECFGIECDVSFGIHS
TAAFVIAEKLIAENALTCEHCGNLVWCFEGIGAHGSQCCRCPYQAEGCPW
IWDGGLPQPDQLYARRIAFQASRCAHLASCPYRKLKISAMMHAHQLARLT
EKFGQSVRAVVGVKPFDLFDRENLLDEV*
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mRNA from alignment at P-wetherbeei_contig8471:539..1552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8471.1.1 ID=mRNA_P-wetherbeei_contig8471.1.1|Name=mRNA_P-wetherbeei_contig8471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1014bp|location=Sequence derived from alignment at P-wetherbeei_contig8471:539..1552- (Phaeothamnion wetherbeei SAG_119_79)
CTTGCCAAGTAAACAGGACCCCCTCTCTCTAGCTCCCAACAGAGCGGAGA
GCGGAAGGGCAGAATCGCACTTCGACGTTTGTATCCCAAATCGATGAGTT
TCGAGAGTCAGTTATGTTGCCAGTACCGCGCGATGCCTGCGGCAAAGTTT
TCACCTGTGTGTCCTCTTCGGGACAGGGAGGGCTTTGGTAGAATGACGGA
ATGCTTCGGCATTGAGTGCGATGTTTCATTTGGAATTCACAGCACCGCTG
CTTTTGTTATCGCAGAGAAACTGATCGCAGAAAACGCGTTGACGTGTGAG
CACTGTGGGAACCTTGTGTGGTGCTTCGAAGGGATCGGTGCCCACGGATC
TCAGTGCTGCCGCTGCCCATATCAGGCTGAGGGCTGCCCGTGGATCTGGG
ATGGCGGTCTGCCCCAGCCGGACCAGCTCTACGCCCGCCGCATCGCGTTT
CAGGCCAGCCGCTGCGCGCACCTGGCGTCGTGCCCTTATCGAAAGCTAAA
GATCTCTGCCATGATGCATGCCCACCAGCTTGCCCGCCTCACAGAAAAGT
TTGGGCAGTCAGTGCGGGCCGTTGTTGGGGTCAAGCCCTTCGACCTTTTC
GATCGTGAGAATCTGCTAGATGAAGTCTAATGGCCCTCCTCCTTTTATTC
CCCATATGAGATGCATGCGAAATAATGTGACCTGTGAAGTCTCTACGTAC
ACCAACTTTTTCGCTTGCGCTTACCTGTCTCCAAACCTTGCTTTCCGCCT
ACGGCTGCCGCCTTCACGTAGTTTGGGTTGAAGGCAGCTTCGTCCTCAGA
CCTTTCCCAGCGAGGTCTCGCGTCTAACGAGCTTGCAGGACCTTGATCTT
GTAGCGAACGGCCTGAGCGATGAGTGAGTCGCCCGCAGGGTGTAAAAAGC
GCTTTTTTATTCAATCAGTCAACCTTCCTCCCTTCGCTTCGTTTCTATAC
TAGGCCTGCACCCTTTACGCCTTCCTTTCCTGCCTCTCCTTTCGCTTTAA
ATTGCATTTTGCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8471:539..1552-

>mRNA_P-wetherbeei_contig8471.1.1 ID=mRNA_P-wetherbeei_contig8471.1.1|Name=mRNA_P-wetherbeei_contig8471.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig8471:539..1552- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTTCGAGAGTCAGTTATGTTGCCAGTACCGCGCGATGCCTGCGGC
AAAGTTTTCACCTGTGTGTCCTCTTCGGGACAGGGAGGGCTTTGGTAGAA
TGACGGAATGCTTCGGCATTGAGTGCGATGTTTCATTTGGAATTCACAGC
ACCGCTGCTTTTGTTATCGCAGAGAAACTGATCGCAGAAAACGCGTTGAC
GTGTGAGCACTGTGGGAACCTTGTGTGGTGCTTCGAAGGGATCGGTGCCC
ACGGATCTCAGTGCTGCCGCTGCCCATATCAGGCTGAGGGCTGCCCGTGG
ATCTGGGATGGCGGTCTGCCCCAGCCGGACCAGCTCTACGCCCGCCGCAT
CGCGTTTCAGGCCAGCCGCTGCGCGCACCTGGCGTCGTGCCCTTATCGAA
AGCTAAAGATCTCTGCCATGATGCATGCCCACCAGCTTGCCCGCCTCACA
GAAAAGTTTGGGCAGTCAGTGCGGGCCGTTGTTGGGGTCAAGCCCTTCGA
CCTTTTCGATCGTGAGAATCTGCTAGATGAAGTCTAA
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