mRNA_P-wetherbeei_contig8470.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8470.1.1
Unique NamemRNA_P-wetherbeei_contig8470.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8470.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8470contigP-wetherbeei_contig8470:322..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002605764.1
Preferred nameINTS2
PFAMsINTS2
Model size132
Max annot lvl33208|Metazoa
KEGG koko:K13139
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009987,GO:0010467,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032039,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue0.000142
EggNOG OGs28K8B@1|root,2QSP2@2759|Eukaryota,38I1N@33154|Opisthokonta,3BBSZ@33208|Metazoa,3CY28@33213|Bilateria,487PR@7711|Chordata
Ec32 ortholog descriptionIntegrator complex subunit 2
Ec32 orthologEc-19_003130.1
DescriptionsnRNA 3'-end processing
Cds size132
COG categoryS
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.2706926-CDS-P-wetherbeei_contig8470:321..4531683187042.2706926-CDS-P-wetherbeei_contig8470:321..453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8470 322..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8470.1.1prot_P-wetherbeei_contig8470.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8470 322..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8470.1.1

>prot_P-wetherbeei_contig8470.1.1 ID=prot_P-wetherbeei_contig8470.1.1|Name=mRNA_P-wetherbeei_contig8470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
SRGLTYRALSQEPLSVFRCWPAVFECPDALAVVLSVLRSLLASS
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mRNA from alignment at P-wetherbeei_contig8470:322..453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8470.1.1 ID=mRNA_P-wetherbeei_contig8470.1.1|Name=mRNA_P-wetherbeei_contig8470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig8470:322..453- (Phaeothamnion wetherbeei SAG_119_79)
TCCCGCGGGCTGACGTACCGGGCGCTGAGCCAGGAGCCGCTTAGCGTGTT
CCGCTGTTGGCCCGCCGTCTTCGAGTGCCCTGACGCCCTGGCCGTCGTGC
TGTCGGTGCTGCGGTCGCTGCTGGCGTCGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8470:322..453-

>mRNA_P-wetherbeei_contig8470.1.1 ID=mRNA_P-wetherbeei_contig8470.1.1|Name=mRNA_P-wetherbeei_contig8470.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig8470:322..453- (Phaeothamnion wetherbeei SAG_119_79)
TCCCGCGGGCTGACGTACCGGGCGCTGAGCCAGGAGCCGCTTAGCGTGTT
CCGCTGTTGGCCCGCCGTCTTCGAGTGCCCTGACGCCCTGGCCGTCGTGC
TGTCGGTGCTGCGGTCGCTGCTGGCGTCGTCC
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