mRNA_P-wetherbeei_contig845.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig845.1.1
Unique NamemRNA_P-wetherbeei_contig845.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig845contigP-wetherbeei_contig845:2589..3815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size707
Hectar predicted targeting categoryother localisation
Exons3
Cds size588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.1359715-UTR-P-wetherbeei_contig845:2588..26631683187041.1359715-UTR-P-wetherbeei_contig845:2588..2663Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig845 2589..2663 -
1683187041.1805468-UTR-P-wetherbeei_contig845:3771..38151683187041.1805468-UTR-P-wetherbeei_contig845:3771..3815Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig845 3772..3815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.1486566-CDS-P-wetherbeei_contig845:2663..29211683187041.1486566-CDS-P-wetherbeei_contig845:2663..2921Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig845 2664..2921 -
1683187041.1586938-CDS-P-wetherbeei_contig845:3167..32491683187041.1586938-CDS-P-wetherbeei_contig845:3167..3249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig845 3168..3249 -
1683187041.1711924-CDS-P-wetherbeei_contig845:3523..37711683187041.1711924-CDS-P-wetherbeei_contig845:3523..3771Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig845 3524..3771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig845.1.1prot_P-wetherbeei_contig845.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig845 2664..3771 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig845.1.1

>prot_P-wetherbeei_contig845.1.1 ID=prot_P-wetherbeei_contig845.1.1|Name=mRNA_P-wetherbeei_contig845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=196bp
MAGDGSPNIEATTEKAKDATGSMKETASDAAGSAKDKVSEAAGSAKDKAS
EAAGSAKDKASEAAGSMKDTASDATDSAKEHASTKGEEMRNAAYEAAAKT
GEYAKEKAGEGFEAAKHVAGTAYEMAKEKAAEAMQAAKAKTQEVAASAKD
KSAEAIGSAKEKTSEAMGAAKSSMGDEASSRAAEQDNQSINRDEK*
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mRNA from alignment at P-wetherbeei_contig845:2589..3815-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig845.1.1 ID=mRNA_P-wetherbeei_contig845.1.1|Name=mRNA_P-wetherbeei_contig845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1227bp|location=Sequence derived from alignment at P-wetherbeei_contig845:2589..3815- (Phaeothamnion wetherbeei SAG_119_79)
AGGCATCAGATGCTGTCGGCTCCGCGAAGGGCAAGGCGAAGGAGATGGCC
GGCGATGGTAGCCCCAACATAGAAGCGACGACGGAGAAGGCGAAGGACGC
CACCGGCTCCATGAAGGAGACGGCGTCGGATGCCGCCGGCTCTGCCAAGG
ACAAGGTGTCAGAGGCCGCCGGCTCTGCCAAGGATAAGGCGTCGGAGGCC
GCCGGCTCTGCCAAGGACAAGGCGTCAGAGGCCGCCGGCTCGATGAAGGA
CACAGCATCGGACGCCACCGACTCCGCCAAGGAGCATGCCAGGTACGAGC
ATTCATTCTATCTTTTATTCTTCAGGGATATCTCAAACAAAGCTAATCGA
AAAAGGAGTCAGGGAGGTAGCCTCAGCGCCATCATCTATCTGTTGCTGCA
GGTTGTACCGTCTTTGCGAACTTTTGCCGCTGGTTGTACCGTCGCTTGTT
ACCGCTTTTCCTTACTCCGCTGCTTCAATTGCCGCCTCCGAGCGTGTCTG
CCGGTGCTGGTGTGCCACTGCTGTCGTTCCGGCATATTGTGGCCGCCGCC
ACCGCTCCCTTCGCAGCACCAAGGGCGAGGAGATGCGGAACGCAGCGTAC
GAGGCGGCAGCCAAGACGGGGGAGTACGCGAAGGAGAAGGCCGGCGAGGT
GAGAGAAGAATACCGCGGGTTCTAGGTCAACTTATTATCTGCCTTCGGAT
CTGGTTTCGGCCGACTGCTGGTGTACGGGCATTGCATTATACAAGGCGTC
CGCTCACAATCGAGTATCGTTTATGAGTTGTCGAGTTTGCTCCGCTTCGG
CGTTAGAAGCTTCCAAACTTCGTGCTCTCAGCATTCATCAGCGGAGACCG
ACTGGCACGCCTCTCCAACCTCCCAACCAATCTCTCTCCCTCAGGGCTTT
GAGGCGGCCAAGCATGTGGCCGGGACGGCCTACGAGATGGCGAAAGAGAA
AGCGGCCGAAGCGATGCAAGCCGCCAAGGCCAAGACACAGGAGGTTGCCG
CCTCAGCCAAGGACAAGTCCGCCGAGGCAATTGGCTCCGCCAAGGAAAAG
ACATCCGAGGCGATGGGCGCCGCCAAGAGTTCCATGGGCGATGAGGCCAG
CAGCCGCGCCGCAGAGCAGGACAACCAGTCCATCAATCGCGACGAAAAGT
GAGGTGGCGGCGACGGCAAGAGAGTTGCAGAAAGCGCCGGCGTTGCGGGC
GGCCGTTGCTGTCGCTGCTGTCCCAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig845:2589..3815-

>mRNA_P-wetherbeei_contig845.1.1 ID=mRNA_P-wetherbeei_contig845.1.1|Name=mRNA_P-wetherbeei_contig845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=588bp|location=Sequence derived from alignment at P-wetherbeei_contig845:2589..3815- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGCGATGGTAGCCCCAACATAGAAGCGACGACGGAGAAGGCGAA
GGACGCCACCGGCTCCATGAAGGAGACGGCGTCGGATGCCGCCGGCTCTG
CCAAGGACAAGGTGTCAGAGGCCGCCGGCTCTGCCAAGGATAAGGCGTCG
GAGGCCGCCGGCTCTGCCAAGGACAAGGCGTCAGAGGCCGCCGGCTCGAT
GAAGGACACAGCATCGGACGCCACCGACTCCGCCAAGGAGCATGCCAGCA
CCAAGGGCGAGGAGATGCGGAACGCAGCGTACGAGGCGGCAGCCAAGACG
GGGGAGTACGCGAAGGAGAAGGCCGGCGAGGGCTTTGAGGCGGCCAAGCA
TGTGGCCGGGACGGCCTACGAGATGGCGAAAGAGAAAGCGGCCGAAGCGA
TGCAAGCCGCCAAGGCCAAGACACAGGAGGTTGCCGCCTCAGCCAAGGAC
AAGTCCGCCGAGGCAATTGGCTCCGCCAAGGAAAAGACATCCGAGGCGAT
GGGCGCCGCCAAGAGTTCCATGGGCGATGAGGCCAGCAGCCGCGCCGCAG
AGCAGGACAACCAGTCCATCAATCGCGACGAAAAGTGA
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