mRNA_P-wetherbeei_contig8434.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8434.1.1
Unique NamemRNA_P-wetherbeei_contig8434.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8434.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8434contigP-wetherbeei_contig8434:1512..2257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009041274.1
PFAMsABC1,Galactosyl_T,Peptidase_C48
Model size746
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categorymitochondrion
Exons1
Evalue0.000115
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size744
COG categoryE
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.0776339-CDS-P-wetherbeei_contig8434:1513..22571683187040.0776339-CDS-P-wetherbeei_contig8434:1513..2257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8434 1514..2257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8434.1.1prot_P-wetherbeei_contig8434.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8434 1514..2257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8434.1.1

>prot_P-wetherbeei_contig8434.1.1 ID=prot_P-wetherbeei_contig8434.1.1|Name=mRNA_P-wetherbeei_contig8434.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
LPRLRRLSLHGANRVSRPALARLLGAFGRGAASASRRELTLKTSLVDCAF
AVAAIAPALHTCRGLEALDLSHNRIGLAGAAALAAAAADAPRLRLLRLRS
NSLGDAAAELLVRAWLGLPFRGGGGGDGCGDGGGEGDVGVESALEAMDVH
DRDGTRPGDRATVRSAEGGDGGGGRGKAYGGPMRTLDISSNEFLTERGAA
ALLALVGRGGEQLPPGGGRQPEGSALLWRPHRPLRLELTTALLERAAA
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mRNA from alignment at P-wetherbeei_contig8434:1512..2257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8434.1.1 ID=mRNA_P-wetherbeei_contig8434.1.1|Name=mRNA_P-wetherbeei_contig8434.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=746bp|location=Sequence derived from alignment at P-wetherbeei_contig8434:1512..2257- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGCGCCTCCGCCGCCTGTCGCTCCACGGCGCCAACCGGGTCAGCCG
GCCGGCGCTGGCCCGCCTGCTGGGCGCGTTCGGCCGCGGCGCTGCCAGCG
CATCCCGAAGAGAGCTGACGCTGAAGACATCGCTGGTGGACTGCGCGTTC
GCCGTCGCCGCCATCGCGCCCGCGCTCCACACCTGCCGCGGCCTCGAGGC
GCTGGATTTAAGCCATAACCGCATTGGGCTGGCCGGTGCAGCGGCGCTGG
CGGCGGCGGCTGCTGACGCGCCGCGGTTGCGCCTCCTGCGGCTGCGCAGC
AACTCGCTAGGGGACGCTGCCGCCGAGCTGCTTGTGCGTGCCTGGCTCGG
CCTGCCGTTCCGAGGTGGCGGCGGCGGTGATGGCTGCGGCGACGGCGGCG
GGGAAGGCGACGTTGGGGTGGAAAGCGCTCTGGAAGCGATGGACGTGCAT
GACCGCGACGGCACCCGTCCTGGCGACCGAGCGACGGTGCGGAGTGCCGA
AGGCGGCGACGGCGGCGGTGGCAGGGGCAAAGCGTATGGTGGACCAATGC
GGACCCTCGACATCAGCAGCAACGAGTTTTTGACGGAGCGCGGCGCCGCG
GCGCTTCTGGCACTGGTCGGTCGCGGCGGCGAGCAGCTGCCACCGGGCGG
CGGGCGGCAGCCCGAGGGGTCGGCGCTGCTCTGGCGGCCGCACCGGCCCC
TGCGGCTGGAGCTGACGACGGCGCTGCTGGAGCGCGCCGCCGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8434:1512..2257-

>mRNA_P-wetherbeei_contig8434.1.1 ID=mRNA_P-wetherbeei_contig8434.1.1|Name=mRNA_P-wetherbeei_contig8434.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig8434:1512..2257- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGCGCCTCCGCCGCCTGTCGCTCCACGGCGCCAACCGGGTCAGCCG
GCCGGCGCTGGCCCGCCTGCTGGGCGCGTTCGGCCGCGGCGCTGCCAGCG
CATCCCGAAGAGAGCTGACGCTGAAGACATCGCTGGTGGACTGCGCGTTC
GCCGTCGCCGCCATCGCGCCCGCGCTCCACACCTGCCGCGGCCTCGAGGC
GCTGGATTTAAGCCATAACCGCATTGGGCTGGCCGGTGCAGCGGCGCTGG
CGGCGGCGGCTGCTGACGCGCCGCGGTTGCGCCTCCTGCGGCTGCGCAGC
AACTCGCTAGGGGACGCTGCCGCCGAGCTGCTTGTGCGTGCCTGGCTCGG
CCTGCCGTTCCGAGGTGGCGGCGGCGGTGATGGCTGCGGCGACGGCGGCG
GGGAAGGCGACGTTGGGGTGGAAAGCGCTCTGGAAGCGATGGACGTGCAT
GACCGCGACGGCACCCGTCCTGGCGACCGAGCGACGGTGCGGAGTGCCGA
AGGCGGCGACGGCGGCGGTGGCAGGGGCAAAGCGTATGGTGGACCAATGC
GGACCCTCGACATCAGCAGCAACGAGTTTTTGACGGAGCGCGGCGCCGCG
GCGCTTCTGGCACTGGTCGGTCGCGGCGGCGAGCAGCTGCCACCGGGCGG
CGGGCGGCAGCCCGAGGGGTCGGCGCTGCTCTGGCGGCCGCACCGGCCCC
TGCGGCTGGAGCTGACGACGGCGCTGCTGGAGCGCGCCGCCGCC
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