mRNA_P-wetherbeei_contig8428.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8428.2.2
Unique NamemRNA_P-wetherbeei_contig8428.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8428.2.2 vs. uniprot
Match: A0A7S2XXP6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXP6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.620e-8
Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   10 PRVTG--WPLDMVPGSSGGNQ-------FQLYDRRVNLDAFGKDAPLYSLLRAWIQDDPSRP 168
            PR T   W   +   SS  N        + + DRRVNL AF +D  LYSLLRAW+QDDPSRP
Sbjct:   57 PRATSHSWGESLSSPSSPSNALYQSDPLYIIMDRRVNLSAFPEDMSLYSLLRAWVQDDPSRP 118
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BLAST of mRNA_P-wetherbeei_contig8428.2.2 vs. uniprot
Match: A0A4D9D8X2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8X2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 9.910e-6
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   70 QLYDRRVNLDAFGKDAPLYSLLRAWIQDDPSRPV 171
            ++  RRVN DA   DA LYS+LRAW+QDDP+R V
Sbjct:   91 EILGRRVNFDALSADASLYSMLRAWVQDDPTRQV 124
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BLAST of mRNA_P-wetherbeei_contig8428.2.2 vs. uniprot
Match: K8YP16_NANGC (Uroporphyrinogen 3 C-methyltransferase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YP16_NANGC)

HSP 1 Score: 50.4 bits (119), Expect = 1.010e-5
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   70 QLYDRRVNLDAFGKDAPLYSLLRAWIQDDPSRPV 171
            ++  RRVN DA   DA LYS+LRAW+QDDP+R V
Sbjct:  551 EILGRRVNFDALSADASLYSMLRAWVQDDPTRQV 584
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8428.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2XXP6_9STRA8.620e-850.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D8X2_9STRA9.910e-661.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YP16_NANGC1.010e-561.76Uroporphyrinogen 3 C-methyltransferase n=1 Tax=Nan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8428contigP-wetherbeei_contig8428:1848..2349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size173
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187039.7396622-CDS-P-wetherbeei_contig8428:1848..19331683187039.7396622-CDS-P-wetherbeei_contig8428:1848..1933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8428 1849..1933 -
1683187039.7556043-CDS-P-wetherbeei_contig8428:2263..23491683187039.7556043-CDS-P-wetherbeei_contig8428:2263..2349Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8428 2264..2349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8428.2.2prot_P-wetherbeei_contig8428.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8428 1849..2349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8428.2.2

>prot_P-wetherbeei_contig8428.2.2 ID=prot_P-wetherbeei_contig8428.2.2|Name=mRNA_P-wetherbeei_contig8428.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
VQQPRVTGWPLDMVPGSSGGNQFQLYDRRVNLDAFGKDAPLYSLLRAWIQ
DDPSRPV
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mRNA from alignment at P-wetherbeei_contig8428:1848..2349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8428.2.2 ID=mRNA_P-wetherbeei_contig8428.2.2|Name=mRNA_P-wetherbeei_contig8428.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=502bp|location=Sequence derived from alignment at P-wetherbeei_contig8428:1848..2349- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAGCAGCCCCGTGTTACTGGATGGCCGCTGGATATGGTTCCTGGTTC
CTCCGGTGGCAACCAATTTCAGCTCTACGATCGGAGGCAGGTGAAAAGAG
GAAGGGCGAGGGGTGCAATCAAGGATTTCTTTTGGATTGCTGCCCAAGAG
GCTTCTTCCCTGTTATGACGAATGACGTTTCTGCAGCGGCTTTTCAAACA
GACGCGATACTGGGAATAGAATGCTTATTTGGAGGCTACATCTCCGTTTT
ATTATCACAATAATCGCGTAATGCAAGTCATTGCAACGCCTTTTTAACTT
CGAGGACCTCGCGTGCCGACATTGGCATACTCGGTCATGATCATGATGGT
TGGCCTGACACGCTTACGATGACTCCGTGACCGCGATCCCCGCCGCCTTT
CGGAACCCGCCGCCAGGGTAAATCTGGACGCCTTCGGCAAGGACGCGCCC
CTCTACTCGCTCCTGCGGGCGTGGATTCAAGATGACCCGTCGCGGCCCGT
CA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8428:1848..2349-

>mRNA_P-wetherbeei_contig8428.2.2 ID=mRNA_P-wetherbeei_contig8428.2.2|Name=mRNA_P-wetherbeei_contig8428.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig8428:1848..2349- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAGCAGCCCCGTGTTACTGGATGGCCGCTGGATATGGTTCCTGGTTC
CTCCGGTGGCAACCAATTTCAGCTCTACGATCGGAGGGTAAATCTGGACG
CCTTCGGCAAGGACGCGCCCCTCTACTCGCTCCTGCGGGCGTGGATTCAA
GATGACCCGTCGCGGCCCGTC
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