mRNA_P-wetherbeei_contig8406.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8406.2.1
Unique NamemRNA_P-wetherbeei_contig8406.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8406.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8406contigP-wetherbeei_contig8406:1411..2711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1301
Hectar predicted targeting categoryother localisation
Exons1
Cds size915
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.6301818-UTR-P-wetherbeei_contig8406:1410..17401683187038.6301818-UTR-P-wetherbeei_contig8406:1410..1740Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8406 1411..1740 -
1683187038.6520703-UTR-P-wetherbeei_contig8406:2655..27111683187038.6520703-UTR-P-wetherbeei_contig8406:2655..2711Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8406 2656..2711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.641731-CDS-P-wetherbeei_contig8406:1740..26551683187038.641731-CDS-P-wetherbeei_contig8406:1740..2655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8406 1741..2655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8406.2.1prot_P-wetherbeei_contig8406.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8406 1741..2655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8406.2.1

>prot_P-wetherbeei_contig8406.2.1 ID=prot_P-wetherbeei_contig8406.2.1|Name=mRNA_P-wetherbeei_contig8406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=305bp
MRDSFPLEMWDKVFVFAGRSEFLFLAAVSKSWKAAFLQCTGAAATSFAAA
VASTPRSIWAFGSGDLVWDDAMTVAAARNVDCGAQVLEWAVARGLFRLSW
DGVDGVDPSSVMSQALETAAGAGNVTVLRWAWGRYQHFCRGDDRDGASDG
CRGGGDDGSGDNSVGDGSGASGADDDGGPTEGGGNGDGDGGSGGGGAGQD
MCGTNRNHRDGGDGRRIFGPECWYRAAYHGRIAVLAWAKACGFLEAGWGV
HRFACRGAAEGGSLAAVRWLRENELPWGKVSQREKSWQIKRKHRGGEDLL
HFDL*
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mRNA from alignment at P-wetherbeei_contig8406:1411..2711-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8406.2.1 ID=mRNA_P-wetherbeei_contig8406.2.1|Name=mRNA_P-wetherbeei_contig8406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1301bp|location=Sequence derived from alignment at P-wetherbeei_contig8406:1411..2711- (Phaeothamnion wetherbeei SAG_119_79)
GCCGATTTTGGCCTTCGGCTCCAAACCCCTAGTTTTGATCCTTAAACACG
CCGCCAATGCGCGACTCGTTCCCGCTCGAGATGTGGGACAAGGTATTCGT
CTTCGCTGGACGAAGCGAGTTCCTCTTTTTGGCCGCCGTGTCAAAATCAT
GGAAAGCAGCGTTCCTGCAGTGCACAGGCGCCGCGGCAACCTCCTTTGCA
GCGGCAGTTGCCTCCACCCCACGCTCGATATGGGCTTTCGGGAGCGGTGA
CCTCGTGTGGGACGACGCGATGACTGTCGCCGCCGCCAGAAACGTTGACT
GCGGTGCACAAGTCCTGGAGTGGGCCGTCGCGCGTGGTCTTTTTCGCCTG
AGCTGGGACGGAGTCGATGGCGTAGACCCGAGCAGCGTTATGTCACAGGC
GCTCGAGACCGCCGCGGGCGCTGGCAATGTAACCGTTCTCCGGTGGGCGT
GGGGTCGCTACCAGCACTTTTGCCGCGGCGACGATCGCGACGGCGCGAGC
GACGGCTGCAGGGGCGGCGGTGATGATGGGAGCGGCGACAACAGCGTTGG
AGATGGCAGCGGAGCTAGCGGCGCTGATGACGACGGCGGCCCAACTGAGG
GCGGCGGCAACGGCGATGGAGACGGTGGCAGTGGCGGCGGCGGTGCTGGC
CAGGACATGTGCGGCACCAACCGAAACCACAGAGACGGTGGCGACGGCCG
CCGCATTTTCGGCCCCGAGTGCTGGTATAGAGCGGCGTACCACGGGCGCA
TCGCCGTCTTGGCGTGGGCAAAAGCCTGCGGTTTTCTGGAGGCCGGCTGG
GGCGTGCACCGCTTTGCGTGCCGCGGCGCTGCTGAGGGCGGGTCGCTCGC
TGCCGTCCGCTGGCTGAGAGAGAACGAGCTGCCGTGGGGCAAGGTGAGCC
AGCGAGAAAAGTCTTGGCAAATAAAGAGGAAGCACAGGGGCGGGGAGGAT
TTGTTGCATTTTGACCTCTGAAGCAACTGTAAAGAGTCTGGTAAATGTGG
GATGCGAAGCATCTTTCGTTATCCTTTAATAGGTCTTTTGTCAACAGAAG
GTACCAAAAATTTCATTGTAGTCCGTTTCCAAGGGTAAATGAGAGGAATA
GTTTGGTTTCGTTCTTTCACCTGCTCTGGTTTCATTGGCATTTGTGGAAG
GTGAGCAAATTGTTCGTCGGCTGTCTCGATCCCTGATACTGCATGCAGCC
CATCAAACCCGTCGCTGATCGACCTCCGCGGTGTCTTTCCGTCGTTCTTT
CCCTTTCTCCGCCCATTTTTCTGTGCAAAACCGGGGTCCCGCTGTCGGAG
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8406:1411..2711-

>mRNA_P-wetherbeei_contig8406.2.1 ID=mRNA_P-wetherbeei_contig8406.2.1|Name=mRNA_P-wetherbeei_contig8406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig8406:1411..2711- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGACTCGTTCCCGCTCGAGATGTGGGACAAGGTATTCGTCTTCGC
TGGACGAAGCGAGTTCCTCTTTTTGGCCGCCGTGTCAAAATCATGGAAAG
CAGCGTTCCTGCAGTGCACAGGCGCCGCGGCAACCTCCTTTGCAGCGGCA
GTTGCCTCCACCCCACGCTCGATATGGGCTTTCGGGAGCGGTGACCTCGT
GTGGGACGACGCGATGACTGTCGCCGCCGCCAGAAACGTTGACTGCGGTG
CACAAGTCCTGGAGTGGGCCGTCGCGCGTGGTCTTTTTCGCCTGAGCTGG
GACGGAGTCGATGGCGTAGACCCGAGCAGCGTTATGTCACAGGCGCTCGA
GACCGCCGCGGGCGCTGGCAATGTAACCGTTCTCCGGTGGGCGTGGGGTC
GCTACCAGCACTTTTGCCGCGGCGACGATCGCGACGGCGCGAGCGACGGC
TGCAGGGGCGGCGGTGATGATGGGAGCGGCGACAACAGCGTTGGAGATGG
CAGCGGAGCTAGCGGCGCTGATGACGACGGCGGCCCAACTGAGGGCGGCG
GCAACGGCGATGGAGACGGTGGCAGTGGCGGCGGCGGTGCTGGCCAGGAC
ATGTGCGGCACCAACCGAAACCACAGAGACGGTGGCGACGGCCGCCGCAT
TTTCGGCCCCGAGTGCTGGTATAGAGCGGCGTACCACGGGCGCATCGCCG
TCTTGGCGTGGGCAAAAGCCTGCGGTTTTCTGGAGGCCGGCTGGGGCGTG
CACCGCTTTGCGTGCCGCGGCGCTGCTGAGGGCGGGTCGCTCGCTGCCGT
CCGCTGGCTGAGAGAGAACGAGCTGCCGTGGGGCAAGGTGAGCCAGCGAG
AAAAGTCTTGGCAAATAAAGAGGAAGCACAGGGGCGGGGAGGATTTGTTG
CATTTTGACCTCTGA
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