mRNA_P-wetherbeei_contig8402.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8402.1.1
Unique NamemRNA_P-wetherbeei_contig8402.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8402.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8402contigP-wetherbeei_contig8402:131..2813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2600
Hectar predicted targeting categoryother localisation
Exons2
Cds size2577
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.4758317-CDS-P-wetherbeei_contig8402:130..14501683187038.4758317-CDS-P-wetherbeei_contig8402:130..1450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8402 131..1450 -
1683187038.4857461-CDS-P-wetherbeei_contig8402:1534..27911683187038.4857461-CDS-P-wetherbeei_contig8402:1534..2791Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8402 1535..2791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187038.4958823-UTR-P-wetherbeei_contig8402:2791..28131683187038.4958823-UTR-P-wetherbeei_contig8402:2791..2813Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8402 2792..2813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8402.1.1prot_P-wetherbeei_contig8402.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8402 131..2791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8402.1.1

>prot_P-wetherbeei_contig8402.1.1 ID=prot_P-wetherbeei_contig8402.1.1|Name=mRNA_P-wetherbeei_contig8402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=859bp
MGAGAGEEQKVGGGGRGGDAGSGGAHGNDDEATEAHAVYVGGGGGDAGHE
LENASAAAPLSKRQRKLAAVKARREAKLAKQGARQKVQTRLKAGSALSFV
DEIFEAFDYSDFVPEARTRTAAPEGPEGWQLGRCRGGSDGGGGGAMRRPP
LMPLPKTFSSWDHYRAAFQPLLLAEALAVVSQAAAAAAAQTAAGRSRDPE
ALPFPLQLDSVAEKVDERGRCMLVAAVPPGRMPRGRVLLPGSVLLLVGIG
ASALPRPSGTNGRGTNGRGALGGFHGGFRAVGGDGRGGGNNVFAVAVVMP
QARAAVRDVPGTVHLQALLDPDAGGDLLATGSSWTALPVASVLHLQRMYA
ALLDPRARPPFLDLLWLRACRRSHIRFGGSDEESSDDGGADGGGGGVGGG
CGGSDRRGGGRAGGDRGTFSSSSSSRRQRMPRCVRCDSFQALNVGQRAAV
ESFVSSTGPSAGLQLLQGPPGTGKTCTIVALLLMLLDRRCTKAAAAMAAA
AEAGATGRAAVLAGATGVGKAVEAAEVAADAGEPTNASSADRSSSAAATE
VASGATTVAGAGDVVAAAAVATAASATGLATIVEAVAVEATSAAEVRFDP
NGVVSALADEVWSEPMEEDDFLDKSDAEEFDGETEEALGEDVRAVARAPA
DGAIETAAVAAARRKAGAVAEAPLVAVCAPSNKAVRVVLQEFLKALARPE
AAARVARTAALQACIAATVAGNPSDCDEETAASADASAVASAALRLSRKD
AGPVAILIGVDEGLLPGASAREVFVHAFADVWAQKLAALAADVFQPLTNA
PGWGTGCAEAAAQAAATVTALVALADAVVALRRRVPRFFAQTLRPQLEAD
ALRATAMSA
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mRNA from alignment at P-wetherbeei_contig8402:131..2813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8402.1.1 ID=mRNA_P-wetherbeei_contig8402.1.1|Name=mRNA_P-wetherbeei_contig8402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2683bp|location=Sequence derived from alignment at P-wetherbeei_contig8402:131..2813- (Phaeothamnion wetherbeei SAG_119_79)
TACTGCTGGGACGGTAGCGGCGATGGGAGCGGGGGCGGGGGAAGAGCAGA
AGGTGGGCGGCGGCGGCCGTGGCGGCGATGCCGGCAGTGGCGGCGCTCAC
GGCAATGACGATGAGGCCACCGAGGCTCACGCTGTTTATGTCGGCGGCGG
CGGCGGTGACGCCGGCCATGAGCTAGAAAACGCCAGCGCGGCTGCACCAC
TATCAAAGAGACAGAGGAAACTGGCGGCGGTGAAGGCGCGGCGGGAGGCA
AAGCTGGCGAAGCAGGGAGCGAGGCAGAAGGTGCAGACCCGATTGAAGGC
TGGGTCGGCGCTGAGCTTTGTCGACGAGATTTTCGAGGCGTTTGACTACT
CCGACTTTGTGCCGGAAGCGCGGACGCGGACGGCGGCCCCGGAGGGGCCG
GAGGGGTGGCAGCTGGGACGTTGTCGCGGCGGCAGCGACGGCGGCGGCGG
CGGCGCGATGCGGCGCCCGCCGCTGATGCCGCTGCCGAAGACTTTCTCAT
CGTGGGACCATTACCGCGCCGCCTTTCAGCCGCTCCTGCTGGCGGAAGCG
TTGGCAGTCGTCTCGCAGGCCGCCGCAGCCGCGGCGGCGCAGACGGCGGC
GGGCCGCAGCCGGGACCCGGAAGCGTTGCCGTTCCCGCTGCAGCTGGACA
GCGTCGCAGAGAAGGTGGACGAGCGCGGACGCTGCATGCTGGTGGCGGCG
GTGCCGCCGGGGCGCATGCCGCGGGGGCGGGTTCTTCTCCCGGGCTCGGT
GTTGCTGCTGGTCGGTATCGGTGCCTCGGCACTGCCGCGGCCGAGCGGTA
CGAACGGACGCGGTACGAACGGACGCGGTGCTCTCGGCGGCTTCCACGGC
GGTTTTCGCGCCGTCGGTGGTGACGGCAGAGGCGGCGGCAATAACGTGTT
TGCCGTGGCCGTCGTGATGCCGCAAGCCCGCGCCGCAGTCCGCGACGTGC
CTGGCACTGTTCACCTGCAGGCGCTGCTCGATCCCGACGCTGGAGGCGAC
CTGCTCGCGACGGGCTCGTCGTGGACGGCGCTGCCGGTGGCCTCTGTCCT
CCACTTGCAGCGGATGTACGCCGCGCTGCTTGACCCGCGGGCGCGACCGC
CGTTCCTCGACTTGCTGTGGCTGCGCGCGTGCCGGCGCTCCCACATCCGC
TTTGGCGGCTCCGACGAGGAAAGTTCGGATGATGGTGGCGCCGACGGTGG
AGGCGGCGGCGTAGGCGGCGGTTGCGGTGGATCTGACCGCCGCGGTGGCG
GCAGAGCTGGCGGCGACCGCGGCACTTTTCTCTGCTGCGAGGCTGGCAGC
AGCAATGGAAGGAGCAGCCTCAGCGGTGTGGACGGCGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGCGGCAGCGGATGCCCA
GGTGCGTGCGGTGCGACTCCTTCCAGGCGCTGAACGTGGGCCAGCGGGCG
GCGGTGGAGTCATTTGTGTCCTCTACCGGTCCGTCTGCCGGCCTGCAGCT
CCTGCAGGGGCCGCCGGGCACGGGCAAGACATGCACCATCGTGGCCCTCC
TGCTGATGCTGCTGGACCGCCGTTGCACCAAGGCTGCGGCTGCGATGGCG
GCGGCGGCAGAGGCGGGCGCGACGGGACGAGCCGCTGTGCTGGCGGGGGC
AACTGGGGTGGGAAAGGCGGTGGAGGCGGCGGAAGTGGCGGCGGATGCGG
GTGAGCCGACAAACGCATCGTCCGCTGACAGAAGCTCATCGGCAGCGGCA
ACTGAGGTTGCTTCCGGAGCAACCACTGTGGCCGGCGCAGGCGATGTTGT
CGCCGCAGCTGCGGTCGCGACGGCAGCTTCTGCGACTGGCCTGGCGACGA
TCGTCGAAGCTGTGGCCGTGGAGGCAACGTCGGCGGCGGAAGTTCGTTTT
GACCCGAATGGAGTCGTTTCGGCGTTGGCCGATGAAGTGTGGTCCGAACC
TATGGAGGAGGATGACTTCCTTGATAAATCTGATGCGGAGGAATTCGACG
GAGAGACGGAGGAGGCTTTAGGGGAGGATGTGCGGGCAGTGGCGCGAGCG
CCGGCCGATGGAGCAATTGAAACGGCAGCGGTGGCGGCGGCGCGAAGGAA
AGCCGGCGCTGTTGCAGAGGCGCCGCTCGTGGCGGTCTGCGCTCCCAGCA
ACAAGGCGGTGCGCGTCGTCCTGCAGGAATTCCTTAAGGCGCTGGCGAGG
CCCGAGGCTGCGGCGCGGGTGGCCAGGACCGCCGCGCTGCAGGCCTGCAT
CGCCGCAACTGTTGCCGGGAATCCGTCGGACTGTGACGAGGAGACCGCGG
CGTCGGCCGACGCGTCCGCCGTGGCCTCGGCCGCGCTGCGACTGTCCCGG
AAGGATGCCGGACCCGTGGCCATCCTCATCGGCGTCGACGAGGGATTACT
CCCCGGCGCGTCTGCCCGGGAGGTGTTTGTGCACGCCTTCGCCGATGTCT
GGGCACAGAAGCTGGCGGCGCTCGCCGCGGATGTCTTTCAGCCGCTGACG
AACGCCCCGGGATGGGGCACTGGCTGCGCGGAGGCGGCGGCGCAGGCGGC
GGCGACGGTAACGGCACTAGTCGCGCTGGCGGACGCCGTGGTGGCGCTGC
GGCGGCGGGTGCCGCGCTTCTTCGCGCAGACGCTTCGGCCGCAGCTGGAA
GCGGACGCGCTCCGCGCGACGGCAATGTCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8402:131..2813-

>mRNA_P-wetherbeei_contig8402.1.1 ID=mRNA_P-wetherbeei_contig8402.1.1|Name=mRNA_P-wetherbeei_contig8402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2577bp|location=Sequence derived from alignment at P-wetherbeei_contig8402:131..2813- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGCGGGGGCGGGGGAAGAGCAGAAGGTGGGCGGCGGCGGCCGTGG
CGGCGATGCCGGCAGTGGCGGCGCTCACGGCAATGACGATGAGGCCACCG
AGGCTCACGCTGTTTATGTCGGCGGCGGCGGCGGTGACGCCGGCCATGAG
CTAGAAAACGCCAGCGCGGCTGCACCACTATCAAAGAGACAGAGGAAACT
GGCGGCGGTGAAGGCGCGGCGGGAGGCAAAGCTGGCGAAGCAGGGAGCGA
GGCAGAAGGTGCAGACCCGATTGAAGGCTGGGTCGGCGCTGAGCTTTGTC
GACGAGATTTTCGAGGCGTTTGACTACTCCGACTTTGTGCCGGAAGCGCG
GACGCGGACGGCGGCCCCGGAGGGGCCGGAGGGGTGGCAGCTGGGACGTT
GTCGCGGCGGCAGCGACGGCGGCGGCGGCGGCGCGATGCGGCGCCCGCCG
CTGATGCCGCTGCCGAAGACTTTCTCATCGTGGGACCATTACCGCGCCGC
CTTTCAGCCGCTCCTGCTGGCGGAAGCGTTGGCAGTCGTCTCGCAGGCCG
CCGCAGCCGCGGCGGCGCAGACGGCGGCGGGCCGCAGCCGGGACCCGGAA
GCGTTGCCGTTCCCGCTGCAGCTGGACAGCGTCGCAGAGAAGGTGGACGA
GCGCGGACGCTGCATGCTGGTGGCGGCGGTGCCGCCGGGGCGCATGCCGC
GGGGGCGGGTTCTTCTCCCGGGCTCGGTGTTGCTGCTGGTCGGTATCGGT
GCCTCGGCACTGCCGCGGCCGAGCGGTACGAACGGACGCGGTACGAACGG
ACGCGGTGCTCTCGGCGGCTTCCACGGCGGTTTTCGCGCCGTCGGTGGTG
ACGGCAGAGGCGGCGGCAATAACGTGTTTGCCGTGGCCGTCGTGATGCCG
CAAGCCCGCGCCGCAGTCCGCGACGTGCCTGGCACTGTTCACCTGCAGGC
GCTGCTCGATCCCGACGCTGGAGGCGACCTGCTCGCGACGGGCTCGTCGT
GGACGGCGCTGCCGGTGGCCTCTGTCCTCCACTTGCAGCGGATGTACGCC
GCGCTGCTTGACCCGCGGGCGCGACCGCCGTTCCTCGACTTGCTGTGGCT
GCGCGCGTGCCGGCGCTCCCACATCCGCTTTGGCGGCTCCGACGAGGAAA
GTTCGGATGATGGTGGCGCCGACGGTGGAGGCGGCGGCGTAGGCGGCGGT
TGCGGTGGATCTGACCGCCGCGGTGGCGGCAGAGCTGGCGGCGACCGCGG
CACTTTTAGCAGCAGCAGCAGCAGCCGGCGGCAGCGGATGCCCAGGTGCG
TGCGGTGCGACTCCTTCCAGGCGCTGAACGTGGGCCAGCGGGCGGCGGTG
GAGTCATTTGTGTCCTCTACCGGTCCGTCTGCCGGCCTGCAGCTCCTGCA
GGGGCCGCCGGGCACGGGCAAGACATGCACCATCGTGGCCCTCCTGCTGA
TGCTGCTGGACCGCCGTTGCACCAAGGCTGCGGCTGCGATGGCGGCGGCG
GCAGAGGCGGGCGCGACGGGACGAGCCGCTGTGCTGGCGGGGGCAACTGG
GGTGGGAAAGGCGGTGGAGGCGGCGGAAGTGGCGGCGGATGCGGGTGAGC
CGACAAACGCATCGTCCGCTGACAGAAGCTCATCGGCAGCGGCAACTGAG
GTTGCTTCCGGAGCAACCACTGTGGCCGGCGCAGGCGATGTTGTCGCCGC
AGCTGCGGTCGCGACGGCAGCTTCTGCGACTGGCCTGGCGACGATCGTCG
AAGCTGTGGCCGTGGAGGCAACGTCGGCGGCGGAAGTTCGTTTTGACCCG
AATGGAGTCGTTTCGGCGTTGGCCGATGAAGTGTGGTCCGAACCTATGGA
GGAGGATGACTTCCTTGATAAATCTGATGCGGAGGAATTCGACGGAGAGA
CGGAGGAGGCTTTAGGGGAGGATGTGCGGGCAGTGGCGCGAGCGCCGGCC
GATGGAGCAATTGAAACGGCAGCGGTGGCGGCGGCGCGAAGGAAAGCCGG
CGCTGTTGCAGAGGCGCCGCTCGTGGCGGTCTGCGCTCCCAGCAACAAGG
CGGTGCGCGTCGTCCTGCAGGAATTCCTTAAGGCGCTGGCGAGGCCCGAG
GCTGCGGCGCGGGTGGCCAGGACCGCCGCGCTGCAGGCCTGCATCGCCGC
AACTGTTGCCGGGAATCCGTCGGACTGTGACGAGGAGACCGCGGCGTCGG
CCGACGCGTCCGCCGTGGCCTCGGCCGCGCTGCGACTGTCCCGGAAGGAT
GCCGGACCCGTGGCCATCCTCATCGGCGTCGACGAGGGATTACTCCCCGG
CGCGTCTGCCCGGGAGGTGTTTGTGCACGCCTTCGCCGATGTCTGGGCAC
AGAAGCTGGCGGCGCTCGCCGCGGATGTCTTTCAGCCGCTGACGAACGCC
CCGGGATGGGGCACTGGCTGCGCGGAGGCGGCGGCGCAGGCGGCGGCGAC
GGTAACGGCACTAGTCGCGCTGGCGGACGCCGTGGTGGCGCTGCGGCGGC
GGGTGCCGCGCTTCTTCGCGCAGACGCTTCGGCCGCAGCTGGAAGCGGAC
GCGCTCCGCGCGACGGCAATGTCAGCC
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