mRNA_P-wetherbeei_contig84.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig84.8.1
Unique NamemRNA_P-wetherbeei_contig84.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig84.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig84contigP-wetherbeei_contig84:10066..10622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size557
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187037.9734857-UTR-P-wetherbeei_contig84:10065..101311683187037.9734857-UTR-P-wetherbeei_contig84:10065..10131Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig84 10066..10131 -
1683187037.9963038-UTR-P-wetherbeei_contig84:10500..106221683187037.9963038-UTR-P-wetherbeei_contig84:10500..10622Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig84 10501..10622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187037.984472-CDS-P-wetherbeei_contig84:10131..105001683187037.984472-CDS-P-wetherbeei_contig84:10131..10500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig84 10132..10500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig84.8.1prot_P-wetherbeei_contig84.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig84 10132..10500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig84.8.1

>prot_P-wetherbeei_contig84.8.1 ID=prot_P-wetherbeei_contig84.8.1|Name=mRNA_P-wetherbeei_contig84.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MAEVAVALLDTGRDVIWNLHWRTRNAVAPLVGEPTVRPGEWQVTTRAIDA
LLTELLGSLIWGWLAGSEREVFAVVGRIRDCRFGGEGSVSLRPGKLPVLR
FSAAWQRTAAAPVAARPGLGRS*
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mRNA from alignment at P-wetherbeei_contig84:10066..10622-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig84.8.1 ID=mRNA_P-wetherbeei_contig84.8.1|Name=mRNA_P-wetherbeei_contig84.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=557bp|location=Sequence derived from alignment at P-wetherbeei_contig84:10066..10622- (Phaeothamnion wetherbeei SAG_119_79)
AAGCAAAGACGGTGTGGGGCCGGTTGCGGCGTGTGTGGGAGACCTTTCTC
GTGCTGCCCGCCTTTCCTGGTGCAGTGGGGCCGCTGCTGTTCTCGAGCGG
CCTCGGCCAGCTAGCGGCGGGGATGGCGGAAGTGGCGGTGGCGCTGCTGG
ACACTGGGCGAGACGTCATCTGGAACCTGCACTGGCGCACGCGAAATGCC
GTCGCCCCCTTGGTGGGTGAACCGACTGTCCGCCCCGGTGAGTGGCAAGT
GACAACGAGAGCGATCGATGCGCTGTTGACGGAGCTCCTCGGGAGCTTGA
TTTGGGGCTGGCTCGCCGGCTCGGAGAGAGAAGTTTTTGCAGTCGTGGGG
CGCATCCGCGATTGTAGGTTCGGGGGAGAGGGTAGCGTCTCCCTGAGGCC
AGGTAAGCTCCCGGTGCTGCGGTTCTCGGCTGCTTGGCAACGGACAGCTG
CGGCGCCGGTGGCGGCCCGCCCAGGCCTAGGCCGTTCATGATAGTAGGAA
GTAGTTGCACAAGGAAATGGATGCGCAGGAAGGCAGGAAGGGGTTGCTCA
GCTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig84:10066..10622-

>mRNA_P-wetherbeei_contig84.8.1 ID=mRNA_P-wetherbeei_contig84.8.1|Name=mRNA_P-wetherbeei_contig84.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig84:10066..10622- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAAGTGGCGGTGGCGCTGCTGGACACTGGGCGAGACGTCATCTG
GAACCTGCACTGGCGCACGCGAAATGCCGTCGCCCCCTTGGTGGGTGAAC
CGACTGTCCGCCCCGGTGAGTGGCAAGTGACAACGAGAGCGATCGATGCG
CTGTTGACGGAGCTCCTCGGGAGCTTGATTTGGGGCTGGCTCGCCGGCTC
GGAGAGAGAAGTTTTTGCAGTCGTGGGGCGCATCCGCGATTGTAGGTTCG
GGGGAGAGGGTAGCGTCTCCCTGAGGCCAGGTAAGCTCCCGGTGCTGCGG
TTCTCGGCTGCTTGGCAACGGACAGCTGCGGCGCCGGTGGCGGCCCGCCC
AGGCCTAGGCCGTTCATGA
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