mRNA_P-wetherbeei_contig8375.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8375.1.1
Unique NamemRNA_P-wetherbeei_contig8375.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: D7FT92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT92_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.730e-16
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  457 LVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATASCVVS 765
            L EL+C GN  L  +P  L SDT +I+W+C L+  HA++ + ++ LN  +E  A ++EE+KLRL+E++  LQE++R L+ ERP  YLA +R +  AT S V S
Sbjct:  139 LEELDCAGNADLDVVPAALHSDTAMILWVCRLHKDHAEDAEQLQRLNDALENKAQKIEETKLRLKEEIRILQEQRRALLKERPGAYLAAKRKVD-ATVSKVCS 240          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: A0A2P4YKA4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YKA4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.770e-15
Identity = 122/242 (50.41%), Postives = 171/242 (70.66%), Query Frame = 1
Query:   31 PNEEGILVLANSSWREVPDLTVA-AETLQVLDLSFN-LVEVLPGATIGSFSLLRELDVSANRLNALPLELEQCKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNKLVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA 750
            P+E GIL L +  W  + ++  + A +L VL++S N LV +     +G+ +LLREL ++ NR++++P+++ +C   XXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        L E+ CEGN  L  IPE LRS+T+L++W+C+   +H  E+  + E+N+ +E  A   +E +L+LRE++  LQ +K+ L +ERP  YL +++ + R T+
Sbjct:   11 PDENGILDLQDKHWVTLDEVVWSYAHSLLVLNVSRNQLVHI--SEAVGNLNLLRELLLANNRISSIPVQIARCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTLCDCPVLEEVGCEGNEGLTDIPESLRSNTKLVLWICSTVKRHRTEVAELVEINSELERMARLGDEERLKLREEIADLQRKKKSLEDERPHNYLFMKKQVERITS 250          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: A0A024TF49_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF49_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.300e-12
Identity = 39/101 (38.61%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  457 LVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATASCV 759
            L  L CEGN +LA IPE LR ++ L++W+     +HA E++ I ++N  +E  A   +E KL+L++++ RL+ +K+ L +ERP  YL L+R ++ A A+ +
Sbjct:  154 LTTLACEGNSELAQIPESLRDNSRLVLWILQRLREHAAEIKYITDINNNLEEAARLADEEKLKLKDEILRLERDKQVLWDERPVHYLKLKRHIKHAAATTM 254          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: H3H307_PHYRM (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=H3H307_PHYRM)

HSP 1 Score: 74.3 bits (181), Expect = 4.090e-12
Identity = 40/98 (40.82%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  457 LVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA 750
            L E+ CEGN  L  IPE LRS+T+L++W+C+   +H  E+  + E+N+ +E  A   +E +L+LRE++  LQ +KR L +ERP  YL +++ + R T+
Sbjct:  153 LEEVGCEGNDGLTDIPESLRSNTKLVLWICSTVKRHRGEVAELVEINSELERMARLGDEERLKLREEIADLQRKKRILEDERPHNYLFVKKHVARITS 250          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: A0A6G0WW04_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW04_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.590e-12
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  454 KLVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA 750
            KL  L CEGN  LA IPE LR ++ L++W+     +HA E++ I ++N  +E  A   +E KL+L+E++ RL+ +K+ L +ERP  YL L+  ++ A A
Sbjct:  153 KLTTLACEGNNDLAQIPESLRDNSRLVLWILQRLREHAAEIKYITDINNNLEEAARLADEEKLKLKEEILRLERDKQLLWDERPVHYLKLKSHVKHAAA 251          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: A0A225UQY5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQY5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.470e-11
Identity = 39/103 (37.86%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  457 LVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATAS-CVV 762
            L E+ CEGN  L  IPE LRS+T+L++W+C+   +H  E+  + E+N  +E  A   +E +L+LRE++  LQ ++++L +ERP  YL +++ + R T+  C +
Sbjct:  153 LEEVGCEGNEGLTDIPESLRSNTKLVLWICSTVKRHRTEVAELIEINTELERMARLGDEERLKLREELADLQRKRKKLEDERPHNYLFMKKQVVRLTSEVCAI 255          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: A0A485KNY7_9STRA (Aste57867_9662 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNY7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.620e-11
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  454 KLVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA 750
            KLV L CEGN  LA IPE LR ++ L++W+     +HA E++ I ++N  +E  A   +E KL+L+E++ RL+ +K+ L +ERP  YL  +  ++ A +
Sbjct:  153 KLVTLACEGNKDLAQIPESLRDNSRLVLWILQRLREHAAEIKYITDINNNLEEAARLADEEKLKLKEEILRLERDKKLLWDERPVHYLKFKGHVKHAAS 251          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: A0A8J5JBD1_9STRA (AAA domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JBD1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.690e-11
Identity = 39/98 (39.80%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  457 LVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA 750
            L E+ CEGN  L  IPE LRS+T+L++W+C+   +H  E+  + E+N+ +E  A   +E +L+LRE++  LQ +K+ L +ERP  YL +++ + R T+
Sbjct:  153 LEEVGCEGNEGLIDIPESLRSNTKLVLWICSTVKRHRAEVSELVEINSELERMARLGDEERLKLREEITNLQRKKKVLEDERPHNYLFVKKHVVRVTS 250          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: K3XA63_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XA63_GLOUD)

HSP 1 Score: 71.2 bits (173), Expect = 5.230e-11
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  463 ELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA 750
            EL CE NP L  IPE LR +T+L++W+C    KH  E+Q + ++NA +E  A   ++ +L+LRE +  LQ +K  L  ERP  YL +++ +  AT+
Sbjct:  155 ELGCEKNPGLEDIPESLRGNTKLVLWICATMKKHRAEVQELVDINAELERMARLGDQERLQLREQIAALQSDKAALEAERPHHYLFVKKHVLHATS 250          
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Match: A0A2D4C0D4_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0D4_PYTIN)

HSP 1 Score: 72.0 bits (175), Expect = 1.290e-10
Identity = 38/99 (38.38%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  454 KLVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNACMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA 750
            +L  ++C+ NP LA IPE LR +T+L++W+C    +H  ++Q +  +NA +E  A   +E +L+LR+++ RL  EK  L  ERP  YL ++R L R ++
Sbjct:  835 QLERVSCQENPDLADIPESLRENTKLVLWICGTMKQHRAQVQELVGINAELERLARLSDEERLQLRQEIARLSREKAALEAERPHHYLFVKRQLHRVSS 933          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8375.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FT92_ECTSI2.730e-1644.66Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A2P4YKA4_9STRA1.770e-1550.41Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A024TF49_9STRA3.300e-1238.61Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
H3H307_PHYRM4.090e-1240.82Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A6G0WW04_9STRA8.590e-1240.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A225UQY5_9STRA1.470e-1137.86Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A485KNY7_9STRA1.620e-1139.39Aste57867_9662 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8J5JBD1_9STRA2.690e-1139.80AAA domain-containing protein n=1 Tax=Phytophthora... [more]
K3XA63_GLOUD5.230e-1140.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4C0D4_PYTIN1.290e-1038.38DNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8375contigP-wetherbeei_contig8375:818..2397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT92
PFAMsLRR_8,NB-ARC
Model size768
Max annot lvl2759|Eukaryota
KEGG koko:K19613,ko:K22038
KEGG TC1.A.25.3
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.47e-17
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size768
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187036.5669224-CDS-P-wetherbeei_contig8375:817..10021683187036.5669224-CDS-P-wetherbeei_contig8375:817..1002Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8375 818..1002 +
1683187036.5798523-CDS-P-wetherbeei_contig8375:1100..14741683187036.5798523-CDS-P-wetherbeei_contig8375:1100..1474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8375 1101..1474 +
1683187036.5895886-CDS-P-wetherbeei_contig8375:1776..18411683187036.5895886-CDS-P-wetherbeei_contig8375:1776..1841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8375 1777..1841 +
1683187036.6089966-CDS-P-wetherbeei_contig8375:2253..23971683187036.6089966-CDS-P-wetherbeei_contig8375:2253..2397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8375 2254..2397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8375.1.1prot_P-wetherbeei_contig8375.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8375 818..2397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8375.1.1

>prot_P-wetherbeei_contig8375.1.1 ID=prot_P-wetherbeei_contig8375.1.1|Name=mRNA_P-wetherbeei_contig8375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
MEENDELVPLPNEEGILVLANSSWREVPDLTVAAETLQVLDLSFNLVEVL
PGATIGSFSLLRELDVSANRLNALPLELEQCKQLRRLKANGNYLRSVPPG
LGTCMLLEEVVLSENKLTELPDSFGNLIVLRVLLLQNNDLRSLPCGLGGL
NKLVELNCEGNPQLATIPEPLRSDTELIMWLCNLNAKHAKELQLIEELNA
CMEAHAVQVEESKLRLREDVERLQEEKRRLINERPKRYLALQRGLRRATA
SCVVS*
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mRNA from alignment at P-wetherbeei_contig8375:818..2397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8375.1.1 ID=mRNA_P-wetherbeei_contig8375.1.1|Name=mRNA_P-wetherbeei_contig8375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1580bp|location=Sequence derived from alignment at P-wetherbeei_contig8375:818..2397+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGAGAACGACGAGCTCGTACCACTCCCCAACGAAGAGGGGATTCT TGTCCTTGCCAATAGCAGCTGGAGAGAAGTGCCTGACCTTACTGTCGCCG CCGAGACGCTGCAGGTCCTCGACCTTTCTTTTAACCTCGTTGAGGTTTTG CCGGGGGCGACCATCGGCAGCTTTTCGCTTTTGAGGTAAGCTCTTTCTTT CCTTGGACTTTAGCGGGTCCGAGGTCCGTTGACCTGATCTGACCTAGGAG TTACTGTATTCTCGCCTTTATTCCCCGCCCTAGGGAACTCGATGTCTCTG CCAATAGGCTCAACGCGCTACCGCTGGAGCTGGAGCAATGCAAGCAGCTG CGAAGGCTCAAAGCCAATGGAAACTACCTGCGGTCGGTGCCGCCGGGCCT CGGCACCTGCATGCTGCTCGAGGAGGTTGTCCTCTCGGAGAACAAGCTCA CCGAATTGCCGGATTCGTTTGGTAACCTCATCGTGCTACGAGTGCTGCTG CTGCAGAACAACGATCTGCGGTCGCTGCCGTGCGGTCTTGGCGGGTTGAA CAAGCTCGTGGAGTTAAATTGCGAGGGGAACCCGCAGCTGGCGACGATTC CGGAGCCACTACGGTCTGACACCGAGCTGATAATGTGGCTCTGCAATCTT AATGCTAGTGGGTTTATCTTTTTAGCATCTGCGTTGGCATTCTGAGGGGT TGCGAAGCAATAGATACCGATTGCGCCACCTTCCATGCCGAGTCATCATC GCTGAAGGTGCTGATGGGTCATCTTTGGGCATAGATCCTTCCTTTCACTT TTCCTGCACGCGACGATCGACCACACTTCTCTGAAATCCAGCTGGTGTAC TTTCGTCTTCTTCAAAGCAAGAGATTGGTCGCGCGAAGATATTTGATTCC TGCCGTAACTGCCGGCGGCTTGCCCTCACTGTCTCTTGGTCTTTGCTTCC ACGTCACAGAACATGCAAAGGAGCTTCAGCTCATTGAGGAGCTGAATGCA TGCATGGAGGCCCATGCCGTGCAGGTGAGCCGCTCAAACAACGGGACAAG TTGGGGCAACAATGCTTCGACTGGTTCACCCTTGGAACACTCTTTTGGCC TTAGCTCTTTTGGGTGGAAGAGGCTACCAGCAGTCCGGCTCACGCTGGAG GAAGCAGCTGGCCAAAGCTAGTACTCTTCCTTGATTGGTGGCTGAGCCGG GTTTTTTGTCAATAATGGCTTTAGCGTCATCCCTTAAGGTGTGAAGCCAG CCGTGCGGTTGCAACCTCCGGCGTTAAAAGCCGATGCACATCCTTGCCTA GCCAGATTCCGTTTCTTCCCGTTTTTCGTCTGTGCTCTTGTCTCGTAATT CCATCCACCCGCTGCGTGCCTGTCTACGGCAACCTCCGACTATCAAAACC TGCTGCCGGTCGCGACACCCGCCGAACGGCCAAAAGGTGGAGGAGTCCAA GCTGCGCCTACGGGAAGATGTGGAGCGGCTGCAGGAGGAGAAGCGGCGGC TGATCAATGAGCGGCCAAAGCGGTACCTGGCTCTCCAGCGGGGGCTGCGG CGGGCAACCGCGTCCTGCGTCGTCTCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8375:818..2397+

>mRNA_P-wetherbeei_contig8375.1.1 ID=mRNA_P-wetherbeei_contig8375.1.1|Name=mRNA_P-wetherbeei_contig8375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig8375:818..2397+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGAGAACGACGAGCTCGTACCACTCCCCAACGAAGAGGGGATTCT
TGTCCTTGCCAATAGCAGCTGGAGAGAAGTGCCTGACCTTACTGTCGCCG
CCGAGACGCTGCAGGTCCTCGACCTTTCTTTTAACCTCGTTGAGGTTTTG
CCGGGGGCGACCATCGGCAGCTTTTCGCTTTTGAGGGAACTCGATGTCTC
TGCCAATAGGCTCAACGCGCTACCGCTGGAGCTGGAGCAATGCAAGCAGC
TGCGAAGGCTCAAAGCCAATGGAAACTACCTGCGGTCGGTGCCGCCGGGC
CTCGGCACCTGCATGCTGCTCGAGGAGGTTGTCCTCTCGGAGAACAAGCT
CACCGAATTGCCGGATTCGTTTGGTAACCTCATCGTGCTACGAGTGCTGC
TGCTGCAGAACAACGATCTGCGGTCGCTGCCGTGCGGTCTTGGCGGGTTG
AACAAGCTCGTGGAGTTAAATTGCGAGGGGAACCCGCAGCTGGCGACGAT
TCCGGAGCCACTACGGTCTGACACCGAGCTGATAATGTGGCTCTGCAATC
TTAATGCTAAACATGCAAAGGAGCTTCAGCTCATTGAGGAGCTGAATGCA
TGCATGGAGGCCCATGCCGTGCAGGTGGAGGAGTCCAAGCTGCGCCTACG
GGAAGATGTGGAGCGGCTGCAGGAGGAGAAGCGGCGGCTGATCAATGAGC
GGCCAAAGCGGTACCTGGCTCTCCAGCGGGGGCTGCGGCGGGCAACCGCG
TCCTGCGTCGTCTCGTGA
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