mRNA_P-wetherbeei_contig8365.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8365.1.1
Unique NamemRNA_P-wetherbeei_contig8365.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8365.1.1 vs. uniprot
Match: A0A1Y1Y4J1_9FUNG (LigT-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y4J1_9FUNG)

HSP 1 Score: 68.6 bits (166), Expect = 3.360e-11
Identity = 44/152 (28.95%), Postives = 75/152 (49.34%), Query Frame = 1 
Query:   10 WNAISEARKG--ERPSSWPPHVALLHPFVRPPKM-ERAAEAIRDATATFSPFTLELSTFQVIAGGERRAMVWLVPT-AEGDSLERLWTAVSAAVPGFENRPSGFRGPYSPHITIATCGSVKKAEAAAAALADSW---HPLHFEVTSLDLMAK 444
            W+ I E R+   +    WPPH+ LL+PF+      E A   +  A +T  PF++ L  F           VWL P  +  +SL  L   ++A+ P    +    +G + PH+++    + ++ E+  A + + +   HPL FEVTS+ L+A+
Sbjct:   23 WDQIQEIRQAHDKHVKRWPPHINLLYPFLPYENFSETALPTLTRALSTIRPFSIRLGRFSWFQHSRNSFTVWLKPADSPEESLANLERKLAASFPELGEQMRTGKGQFVPHLSVGQFKTKEQVESLVAEMDERFSESHPLEFEVTSVQLIAR 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8365.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Y1Y4J1_9FUNG3.360e-1128.95LigT-like protein n=1 Tax=Basidiobolus meristospor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8365contigP-wetherbeei_contig8365:154..648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD12087
PFAMs2_5_RNA_ligase2
Model size495
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.57e-19
EggNOG OGs2DKMB@1|root,2S635@2759|Eukaryota
Description2'-5' RNA ligase superfamily
Cds size495
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.8800108-CDS-P-wetherbeei_contig8365:153..6481683187035.8800108-CDS-P-wetherbeei_contig8365:153..648Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8365 154..648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8365.1.1prot_P-wetherbeei_contig8365.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8365 154..648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8365.1.1

>prot_P-wetherbeei_contig8365.1.1 ID=prot_P-wetherbeei_contig8365.1.1|Name=mRNA_P-wetherbeei_contig8365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
SEAWNAISEARKGERPSSWPPHVALLHPFVRPPKMERAAEAIRDATATFS
PFTLELSTFQVIAGGERRAMVWLVPTAEGDSLERLWTAVSAAVPGFENRP
SGFRGPYSPHITIATCGSVKKAEAAAAALADSWHPLHFEVTSLDLMAKER
GYKARFTRRATVALG
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mRNA from alignment at P-wetherbeei_contig8365:154..648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8365.1.1 ID=mRNA_P-wetherbeei_contig8365.1.1|Name=mRNA_P-wetherbeei_contig8365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig8365:154..648- (Phaeothamnion wetherbeei SAG_119_79)
AGCGAGGCATGGAACGCCATTTCAGAAGCAAGAAAAGGAGAGCGGCCGTC
ATCGTGGCCACCTCACGTGGCGCTGCTGCATCCCTTTGTACGGCCACCCA
AGATGGAAAGGGCGGCGGAAGCGATACGCGACGCGACGGCGACGTTTTCT
CCATTCACTCTGGAGCTCAGCACTTTCCAGGTGATCGCTGGAGGGGAGAG
GCGAGCTATGGTATGGCTCGTGCCGACGGCCGAAGGCGACTCTTTGGAGC
GGCTCTGGACTGCGGTTTCTGCAGCGGTTCCTGGGTTTGAGAACCGCCCG
TCAGGCTTTCGGGGTCCTTATTCCCCGCATATTACCATTGCAACCTGCGG
GTCCGTCAAAAAGGCCGAGGCGGCAGCGGCTGCGCTTGCCGATTCCTGGC
ATCCTTTACATTTTGAGGTAACGAGCTTGGATTTAATGGCGAAAGAAAGA
GGATATAAAGCGCGGTTCACGCGTCGGGCCACGGTTGCGCTTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8365:154..648-

>mRNA_P-wetherbeei_contig8365.1.1 ID=mRNA_P-wetherbeei_contig8365.1.1|Name=mRNA_P-wetherbeei_contig8365.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig8365:154..648- (Phaeothamnion wetherbeei SAG_119_79)
AGCGAGGCATGGAACGCCATTTCAGAAGCAAGAAAAGGAGAGCGGCCGTC
ATCGTGGCCACCTCACGTGGCGCTGCTGCATCCCTTTGTACGGCCACCCA
AGATGGAAAGGGCGGCGGAAGCGATACGCGACGCGACGGCGACGTTTTCT
CCATTCACTCTGGAGCTCAGCACTTTCCAGGTGATCGCTGGAGGGGAGAG
GCGAGCTATGGTATGGCTCGTGCCGACGGCCGAAGGCGACTCTTTGGAGC
GGCTCTGGACTGCGGTTTCTGCAGCGGTTCCTGGGTTTGAGAACCGCCCG
TCAGGCTTTCGGGGTCCTTATTCCCCGCATATTACCATTGCAACCTGCGG
GTCCGTCAAAAAGGCCGAGGCGGCAGCGGCTGCGCTTGCCGATTCCTGGC
ATCCTTTACATTTTGAGGTAACGAGCTTGGATTTAATGGCGAAAGAAAGA
GGATATAAAGCGCGGTTCACGCGTCGGGCCACGGTTGCGCTTGGA
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