mRNA_P-wetherbeei_contig836.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig836.1.1
Unique NamemRNA_P-wetherbeei_contig836.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: D7G8L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L4_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.960e-59
Identity = 95/176 (53.98%), Postives = 123/176 (69.89%), Query Frame = 1
Query:    1 TKLYLPGAAECLEFVDGDGGAPTLVVSCRGLPHLTYVDCETLQQAKVSINDNAWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLGHSGAVRDVHGDAASRRIVTASYDKSVRVW 528
            T+LY P A E +EFV G+GGA  LVVS R  PHLTYV+ ETLQQ +VS+N+  WD+HVSF+++ +  S    G+YLLAATDKSR++L+R G +  VRTL     D YFQPR  +D SG F+  N+  D+ +HV CLAS R V  L GH   +RD+H D + R +VTASYDK+V+VW
Sbjct:   14 TQLYFPEAVESVEFVKGEGGALELVVSARAQPHLTYVNIETLQQRRVSLNEKEWDTHVSFTVMSMAAS--GDGKYLLAATDKSRNILWRAGSNARVRTLMGHTTDDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRVVEQLKGHRAVIRDIHHDPSRRVLVTASYDKTVKVW 187          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A6H5JKD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD0_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 2.230e-58
Identity = 95/176 (53.98%), Postives = 123/176 (69.89%), Query Frame = 1
Query:    1 TKLYLPGAAECLEFVDGDGGAPTLVVSCRGLPHLTYVDCETLQQAKVSINDNAWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLGHSGAVRDVHGDAASRRIVTASYDKSVRVW 528
            T+LY P A E +EFV G+GGA  LVVS R  PHLTYV+ ETLQQ +VS+N+  WD+HVSF+++ +  S    G+YLLAATDKSR++L+R G +  VRTL     D YFQPR  +D SG F+  N+  D+ +HV CLAS R V  L GH   +RD+H D + R +VTASYDK+V+VW
Sbjct:   93 TQLYFPEAVESVEFVRGEGGALELVVSARAQPHLTYVNIETLQQRRVSLNEKEWDTHVSFTVMSMAAS--GDGKYLLAATDKSRNILWRAGSNARVRTLMGHTTDDYFQPRVQWDPSGLFSYCNSSGDHDVHVHCLASGRAVEQLKGHRAVIRDIHHDPSRRVLVTASYDKTVKVW 266          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A836CE45_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE45_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.710e-49
Identity = 91/181 (50.28%), Postives = 115/181 (63.54%), Query Frame = 1
Query:    1 TKLYLPGAAECLEFVDG--DGGAPTLVVSCRGLPHLTYVDCET---LQQAKVSINDNAWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLGHSGAVRDVHGDAASRRIVTASYDKSVRVW 528
            TKLY P A E +EFV G   G    L+V+ R  PHL YVD        QA+VS+N NAWD+HVSFS+LGL  SP   GRY+LAATD++R +++R GH+ H+RTL    AD YFQPR  +  SG  A  N+Q    +  +C+A  R V    GH+GAVRDV     +R + TASYDKSV+VW
Sbjct:  112 TKLYFPEAVEAVEFVGGGASGDPQRLMVASREQPHLVYVDLVDGAGYAQARVSVNANAWDAHVSFSVLGLAASP--DGRYVLAATDRARTIVYRAGHNAHIRTLVGHAADAYFQPRAAWSPSGLTAFCNSQDARGVVAYCVAGARVVERAGGHAGAVRDVCTHPTARVLYTASYDKSVKVW 290          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A7S2SGN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGN2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 7.500e-39
Identity = 81/180 (45.00%), Postives = 108/180 (60.00%), Query Frame = 1
Query:   10 YLPGAAECLEFVDGDGG------APTLVVSCRGLPHLTYVDCETLQQA-KVSINDNAWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLGHSGAVRDVHGDAASRRIVTASYDKSVRVW 528
            Y   A + L FV    G      A  LV++ RG P L YVD        +VS+N +AWD+HVSF++L L  SP   GRYLLAATDK RH+++ VG   H R L    AD Y +PR  +D+SG + + N+Q D+ + V+CLASQR V  L GH G +RD+    + R + TASYD +V+VW
Sbjct:  156 YFREAVDALAFVPSPRGSAPGGQAECLVMAPRGHPALKYVDLGAPSTPWEVSLNASAWDTHVSFNVLHLEASP--DGRYLLAATDKDRHIIYPVGQHIHARELFGHAADAYAKPRVCWDSSGGYVLSNSQNDSGVFVWCLASQRVVHRLEGHKGIIRDLSHHPSRRLLATASYDHTVKVW 333          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A7S2SGK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGK4_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.370e-37
Identity = 81/180 (45.00%), Postives = 108/180 (60.00%), Query Frame = 1
Query:   10 YLPGAAECLEFVDGDGG------APTLVVSCRGLPHLTYVDCETLQQA-KVSINDNAWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLGHSGAVRDVHGDAASRRIVTASYDKSVRVW 528
            Y   A + L FV    G      A  LV++ RG P L YVD        +VS+N +AWD+HVSF++L L  SP   GRYLLAATDK RH+++ VG   H R L    AD Y +PR  +D+SG + + N+Q D+ + V+CLASQR V  L GH G +RD+    + R + TASYD +V+VW
Sbjct:  321 YFREAVDALAFVPSPRGSAPGGQAECLVMAPRGHPALKYVDLGAPSTPWEVSLNASAWDTHVSFNVLHLEASP--DGRYLLAATDKDRHIIYPVGQHIHARELFGHAADAYAKPRVCWDSSGGYVLSNSQNDSGVFVWCLASQRVVHRLEGHKGIIRDLSHHPSRRLLATASYDHTVKVW 498          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: K8YTZ0_NANGC (Uncharacterized protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTZ0_NANGC)

HSP 1 Score: 142 bits (359), Expect = 3.630e-37
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    4 KLYLPGAAECLEFVD---------------------GDGGA-----PTLVVSCRGLPHLTYVDCETLQQAKVSINDNAWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLGHSGAVRDVHGDAASRRIVTASYDKSVRVW 528
              Y  G  E L FVD                     G+GG      P L+V+ R + HLTY+DC++ ++  VS+N+  WD+HVSFS+L L  SP     +LLAATDKSR +L+R+GH+  +R+L+   AD Y  PR  +D +G +   ++Q+ N L  + LAS+R V  L GH   VRD+  D AS  + + +YDK++R+W
Sbjct:  277 SFYFLGNVEALAFVDRPASGCGKVLKPLETGEAQTRGEGGLSACSRPFLIVASRNVAHLTYIDCDSFEKHTVSLNNALWDTHVSFSVLSLAVSPCQ--EFLLAATDKSRVILYRIGHNEQLRSLYGHRADEYSNPRVAWDRNGNYVYCSSQEGNELVGWSLASERVVVKLKGHRALVRDMTFDPASCLLASIAYDKTLRLW 475          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A7S2ENR5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENR5_TRICV)

HSP 1 Score: 119 bits (297), Expect = 1.920e-28
Identity = 67/182 (36.81%), Postives = 107/182 (58.79%), Query Frame = 1
Query:    4 KLYLPGAAECLEFVDGDGGAPTLVVSCRGLPHLTYVDC-ETLQQAKVSINDNA--WDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLG----HSGAVRDVHGDAASRRIVTASYDKSVRVW 528
             ++LPG  E + F+D       LV   R  P+L+Y D  +  +Q K ++N     ++ HVSF+I+ L  SP   G+YL AATD SR+++F  G S+ +R L+    DG+ QP+  + +SG++  GN Q+D+++ V+ +AS   V  L G    H+  +RD+     S  +VTASYDK+++VW
Sbjct:  261 SMHLPGPVEAMCFLDR---GEQLVCYARDTPYLSYFDMTDGYKQTKYNVNSEVKGFEDHVSFAIMHLVPSP--DGKYLAAATDTSRNIIFEAGSSKQIRNLYGHKNDGFSQPKIAWSSSGQYLFGNTQEDSSVCVWDIASASIVRRLDGSVGGHTSQIRDITSSPISDTLVTASYDKTIKVW 437          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A7S4VWJ4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VWJ4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.020e-27
Identity = 68/188 (36.17%), Postives = 106/188 (56.38%), Query Frame = 1
Query:    7 LYLPGAAECLEFVDGDGGAPTLVVSCRGLPHLTYVDCET-LQQAKVSINDNA----WDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLL---------GHSGAVRDVHGDAASRRIVTASYDKSVRVW 528
            L+L GA E + F++G      L    R   +L+Y D E   +  K S+N +A    +D HVSF+++ LT SP   G+Y+ AATD SR ++     SR +R L+    DG+ QP+  +  +G++ +GN Q+DN++ V+ +AS   V  L           H+G +RD++  + S   VTASYDK+V+VW
Sbjct:  270 LHLSGAVEAMCFLEG---GKILCCYVRNTSYLSYFDLEDGCKLTKYSLNGSAPTGGFDDHVSFAVMDLTPSP--DGKYIAAATDTSRQIILESSSSRQIRNLYGHKNDGFSQPKLAWSTNGQYILGNTQEDNSICVWDIASSSIVKRLNDKTCNSGGGAHTGQIRDLYSSSTSNTFVTASYDKTVKVW 452          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A7S2VZ64_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ64_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.440e-26
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 1
Query:   85 RGLPHLTYVDCETLQQAKVSIN-DN---AWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNA--LHVFCLASQREVAVLLG-HSGAVRDVHGDAASRRIVTASYDKSVRVW 528
            R  P+LTY++ +  +  K S+N DN    ++ HVSF+++ L  SP   G+Y+ AATD SR+++ +VG S  +R L+    D Y QPR  +  +G++  GNAQ D +  + V+ +AS   V    G H G VRD+     S  +VTASYDKSV+VW
Sbjct:   16 RDTPYLTYLNIQNWELIKYSLNGDNPAGGFEDHVSFAVMHLVVSP--NGKYICAATDSSRNIIMQVGTSHIIRNLYGHQNDSYSQPRVAWSKNGKYIFGNAQDDGSTTVVVWDIASSEIVRYFKGIHRGKVRDIFSSPHSDTLVTASYDKSVKVW 168          
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Match: A0A7S3PUU5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUU5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.510e-25
Identity = 74/182 (40.66%), Postives = 103/182 (56.59%), Query Frame = 1
Query:    4 KLYLPGAAECLEFVDGDGGAPTLVVSCRGLPHLTYVDC-ETLQQAKVSINDNA---WDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLHAPLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQR--EVAVLLG-HSGAVRDVHGDAASRRIVTASYDKSVRVW 528
              +L GA E L FV+ DG    L +  R    LTY D  +       S+N +    +DSHVSF+++ L  SP   G YL AATD SR+++  VG S  VR L+    DG+ QPR  +  SG +  GN+Q+D+ L V+ +AS +  +     G H+G +RD+ G   S  IVTASYDK+V+VW
Sbjct:  261 SFHLSGAVETLCFVN-DGNV--LCLYERETSVLTYFDLNDDFAATSHSLNGSVTGGFDSHVSFAVMQLVLSP--NGMYLCAATDASRNIIIEVGTSNIVRDLYGHKNDGFSQPRVAWSNSGEYIFGNSQEDSGLCVWDIASTKLLQTGAHKGQHTGKIRDIFGSKMSDTIVTASYDKNVKVW 437          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig836.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G8L4_ECTSI1.960e-5953.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKD0_9PHAE2.230e-5853.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CE45_9STRA6.710e-4950.28WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S2SGN2_9STRA7.500e-3945.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SGK4_9STRA1.370e-3745.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K8YTZ0_NANGC3.630e-3738.81Uncharacterized protein (Fragment) n=3 Tax=Monodop... [more]
A0A7S2ENR5_TRICV1.920e-2836.81Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4VWJ4_9STRA3.020e-2736.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2VZ64_9STRA1.440e-2640.65Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3PUU5_9STRA2.510e-2540.66Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig836contigP-wetherbeei_contig836:238..765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8L4
PFAMsWD40
Model size528
Max annot lvl2759|Eukaryota
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.21e-60
EggNOG OGs28N03@1|root,2S80F@2759|Eukaryota
DescriptionWD40 repeats
Cds size528
COG categoryS
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.5847194-CDS-P-wetherbeei_contig836:237..7651683187035.5847194-CDS-P-wetherbeei_contig836:237..765Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig836 238..765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig836.1.1prot_P-wetherbeei_contig836.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig836 238..765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig836.1.1

>prot_P-wetherbeei_contig836.1.1 ID=prot_P-wetherbeei_contig836.1.1|Name=mRNA_P-wetherbeei_contig836.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
TKLYLPGAAECLEFVDGDGGAPTLVVSCRGLPHLTYVDCETLQQAKVSIN
DNAWDSHVSFSILGLTRSPADGGRYLLAATDKSRHLLFRVGHSRHVRTLH
APLADGYFQPRCVFDASGRFAVGNAQQDNALHVFCLASQREVAVLLGHSG
AVRDVHGDAASRRIVTASYDKSVRVW
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mRNA from alignment at P-wetherbeei_contig836:238..765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig836.1.1 ID=mRNA_P-wetherbeei_contig836.1.1|Name=mRNA_P-wetherbeei_contig836.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig836:238..765+ (Phaeothamnion wetherbeei SAG_119_79)
ACGAAGCTGTACCTGCCAGGTGCGGCCGAGTGTCTCGAGTTCGTCGACGG CGACGGCGGCGCGCCGACGCTCGTCGTCTCCTGCCGCGGGCTGCCCCACC TGACGTACGTCGACTGCGAAACGCTGCAGCAAGCCAAAGTCAGCATCAAC GACAATGCCTGGGACTCGCACGTCTCTTTCTCCATCCTCGGGCTGACGCG GTCCCCGGCTGACGGCGGCCGCTACCTGCTGGCGGCGACGGACAAGTCCC GCCACCTGCTCTTCCGTGTCGGCCACAGCCGCCACGTGCGGACATTGCAT GCTCCCCTGGCCGACGGCTACTTCCAGCCGCGCTGCGTCTTTGACGCTTC GGGCCGCTTCGCCGTCGGCAACGCCCAGCAGGACAACGCGCTGCACGTCT TCTGCCTGGCGTCGCAGCGGGAGGTGGCAGTGCTGCTGGGCCACAGCGGG GCGGTGCGGGACGTGCACGGCGATGCGGCATCACGGCGGATTGTCACGGC GTCATACGACAAGTCCGTGCGGGTGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig836:238..765+

>mRNA_P-wetherbeei_contig836.1.1 ID=mRNA_P-wetherbeei_contig836.1.1|Name=mRNA_P-wetherbeei_contig836.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig836:238..765+ (Phaeothamnion wetherbeei SAG_119_79)
ACGAAGCTGTACCTGCCAGGTGCGGCCGAGTGTCTCGAGTTCGTCGACGG
CGACGGCGGCGCGCCGACGCTCGTCGTCTCCTGCCGCGGGCTGCCCCACC
TGACGTACGTCGACTGCGAAACGCTGCAGCAAGCCAAAGTCAGCATCAAC
GACAATGCCTGGGACTCGCACGTCTCTTTCTCCATCCTCGGGCTGACGCG
GTCCCCGGCTGACGGCGGCCGCTACCTGCTGGCGGCGACGGACAAGTCCC
GCCACCTGCTCTTCCGTGTCGGCCACAGCCGCCACGTGCGGACATTGCAT
GCTCCCCTGGCCGACGGCTACTTCCAGCCGCGCTGCGTCTTTGACGCTTC
GGGCCGCTTCGCCGTCGGCAACGCCCAGCAGGACAACGCGCTGCACGTCT
TCTGCCTGGCGTCGCAGCGGGAGGTGGCAGTGCTGCTGGGCCACAGCGGG
GCGGTGCGGGACGTGCACGGCGATGCGGCATCACGGCGGATTGTCACGGC
GTCATACGACAAGTCCGTGCGGGTGTGG
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