mRNA_P-wetherbeei_contig8354.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8354.1.1
Unique NamemRNA_P-wetherbeei_contig8354.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A6H5JGE2_9PHAE (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGE2_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.530e-43
Identity = 89/175 (50.86%), Postives = 111/175 (63.43%), Query Frame = 1
Query:    1 WDESFLKYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAARPGHPAGFSRLACSAPMYRMRTGMPHFVAYAAAAFGCACGWGERYAPGEGDVDPGGVIKKKLTTCSRRVARLEALRRAFPQV 525
            WDESFLKYG  I + L+ G NVY MD RSQGLSGRHL  +PQ+T+VESFDD+++D  +FV +V+V  CGV   S++  LAHSMGG ++ + AA  G    F RL   +PM  M+ GMPHFVA       C  G G  YAP +  VD    I  KLTT   R+A  E +RRA+P V
Sbjct:   54 WDESFLKYGDVISELLQAGINVYAMDWRSQGLSGRHL-LDPQVTYVESFDDHLDDLSFFVNQVVVESCGV-RTSQLTCLAHSMGGLLSLMAAA--GDRGLFQRLVVCSPMIMMKCGMPHFVALWLGRLFCRLGMGSSYAPVQSGVDVSRPITMKLTTDKARLATWERIRRAYPIV 224          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A5C6M304_9PLAN (Lysophospholipase L2 n=1 Tax=Planctomyces bekefii TaxID=1653850 RepID=A0A5C6M304_9PLAN)

HSP 1 Score: 92.0 bits (227), Expect = 4.500e-19
Identity = 71/178 (39.89%), Postives = 91/178 (51.12%), Query Frame = 1
Query:    7 ESFLKYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVR---EVIVRRCGVAHASEVKVLAHSMGGFVATLLAARPGHPAGFSRLACSAPMYRMRTGM-PHFVAYAAAAFGCACGWGERYAPGEGDVDPGGV-IKKKLTTCSR-RVARLEALRRAFPQ 522
            ES  KYG  I    R G  VY MDHR  G SGR    NPQI HVE+FDDYV DA  F     E + RR  +     + +  HSMGG V   L  R  HP  F +   S P++ M+TG+ P  +A    AF    G G+ +APG    DP    +++  TT S+ R A L+ + R  P+
Sbjct:   59 ESIWKYGEFILDLNRLGLAVYIMDHRGMGESGR-FAENPQIVHVENFDDYVQDAKTFATWSAEDLERRGKIP----LYLFGHSMGGLVGAFLLGRD-HP--FEKAILSTPLFEMKTGLIPPAIAQWVVAFNVWRGKGKDFAPGRSAFDPASAKVEESRTTHSQARFAMLKEIWRERPE 228          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A2U1WN12_9PROT (Lysophospholipase n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1WN12_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 1.020e-18
Identity = 64/142 (45.07%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   19 KYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAARPGHPAGFSRLACSAPMYRMRT-GMPHFVAYAAAAFGCACGWGERYAPGEGDVDP 441
            KY       L  G+ V+ MD R+QGLS R  P NPQ  HVE F     D   FV EV+  R        + +LAHSMGG VATL AAR  HP  F     SAPM+ +   G P ++A   A   CA G+G RYA G+GD DP
Sbjct:   52 KYEETARTLLMRGFEVFAMDWRNQGLSTRPSP-NPQRHHVEDFAALAGDLERFVAEVVAPRAR----GPLVLLAHSMGGLVATLHAAR--HPERFRAAILSAPMHDINLRGFPAWLARFLADAACALGFGARYAFGQGDYDP 186          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A433J2U2_9PROT (Alpha/beta hydrolase n=2 Tax=Azospirillum doebereinerae TaxID=92933 RepID=A0A433J2U2_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 2.220e-18
Identity = 68/167 (40.72%), Postives = 86/167 (51.50%), Query Frame = 1
Query:   19 KYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAARP-----GHPAGFSRLACSAPMYRMRT-GMPHFVAYAAAAFGCACGWGERYAPGEGDVDPGGVIKKKLTTCSRRVARLEA 501
            KY    E F+  G+ V T D R+QGLS R L AN QI H+  F   V+D L  V + +V       A  V + AHSMG  VA L  AR      G P  ++    SAPM+ + T G+P  +    AA+GCACGW ERYA G+ D DP   I +   T +   AR  A
Sbjct:   44 KYTETAEAFVARGFQVVTFDWRNQGLSDRPL-ANRQIHHLTDFATLVDD-LDAVHDALVAPL----AKPVVLAAHSMGALVALLALARHAGEPGGRPGRYAAAILSAPMFEIHTRGLPRPLVAWLAAYGCACGWAERYAFGQHDYDPAEGIFRADNTITSDPARYAA 204          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: UPI001AE6B432 (alpha/beta hydrolase n=1 Tax=Azospirillum picis TaxID=488438 RepID=UPI001AE6B432)

HSP 1 Score: 89.7 bits (221), Expect = 4.050e-18
Identity = 60/144 (41.67%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   19 KYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAARPGH--PAGFSRLACSAPMYRMRTG-MPHFVAYAAAAFGCACGWGERYAPGEGDVDP 441
            KY    +     G+ V   D R+QGLSGR LP NPQI H+  F   V+D L  + + +V          + +LAHSMG  VA L  AR     P  ++ +  SAPMY +  G +P  +A   A+ G A GWGERYAPG+GD DP
Sbjct:   69 KYAETADALAVRGFRVVAADWRNQGLSGRPLP-NPQIHHLSDFTTLVDD-LDALHDQLVAPVVAETGGPLILLAHSMGALVAVLALARHADDDPGRYAAVLLSAPMYAVNFGRLPRRLARWLASLGLALGWGERYAPGQGDYDP 210          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A4P7YH72_9PROT (Alpha/beta hydrolase n=2 Tax=unclassified Azospirillum TaxID=2630922 RepID=A0A4P7YH72_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 7.860e-18
Identity = 63/163 (38.65%), Postives = 85/163 (52.15%), Query Frame = 1
Query:   55 GYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAAR--PGHPAGFSRLACSAPMYRMRTGM-PHFVAYAAAAFGCACGWGERYAPGEGDVDPGGV---IKKKLTTCSRRVARLEALRRAFPQV 525
            G+ V  +D R+QGLS R LP N QI H+  F   V+D L  V   +V          V +LAHSMGG V TL  AR     P  ++ +  +APMY + +G+ P ++    A+ G ACGWG RYA G+GD DP      +  K+T   RR A   +     PQ+
Sbjct:   77 GFRVVALDWRNQGLSDRPLP-NRQIHHLTDFMTLVDD-LDEVHRQVVAPVAAETGGPVILLAHSMGGLVTTLAMARHVDDDPGRYAAVLLAAPMYAIHSGLLPRWLVRVLASLGLACGWGARYALGQGDYDPAEGRFRLDNKITADPRRYAAFHSPFAERPQL 237          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A5A9GSL8_AZOLI (Alpha/beta hydrolase n=7 Tax=Azospirillum TaxID=191 RepID=A0A5A9GSL8_AZOLI)

HSP 1 Score: 88.6 bits (218), Expect = 8.160e-18
Identity = 58/144 (40.28%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   19 KYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAARPGH--PAGFSRLACSAPMYRMRTGM-PHFVAYAAAAFGCACGWGERYAPGEGDVDP 441
            KY    +     G+ V  +D R+QGLS R LP N QI H+  F   V+D L  V   +V          V +LAHSMGG VATL  AR     P  ++ +  +APMY + +G+ P ++    A+ G  CGWG RYA G+GD DP
Sbjct:   39 KYAETADALAARGFRVVALDWRNQGLSDRPLP-NRQIHHLTDFARLVDD-LDEVHRQVVAPVAAETGGPVILLAHSMGGLVATLALARHADDDPGRYAAVLLAAPMYAIHSGLLPRWLVRVLASLGVTCGWGARYALGQGDYDP 180          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A2U1VER1_9PROT (Lysophospholipase n=1 Tax=Azospirillum sp. TSO35-2 TaxID=716796 RepID=A0A2U1VER1_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 1.070e-17
Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = 1
Query:   19 KYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAAR-----PG-HPAGFSRLACSAPMYRMRTG-MPHFVAYAAAAFGCACGWGERYAPGEGDVDP 441
            KY    +     G+ V  +D R+QGLS R L AN QI H+  F   V+D L  + + +V          + +LAHSMGG VATL  AR     PG  P  ++ +  SAPMY + TG +P ++    A+ G ACGW ERYA G+GD DP
Sbjct:   57 KYTETADALAARGFRVIAVDWRNQGLSDRPL-ANRQIHHITDFATLVDD-LDALHDQMVAPLVAESGGPLVLLAHSMGGLVATLALARHATGAPGTDPDRYAAVLLSAPMYAINTGPLPRWLVRGLASLGLACGWAERYALGQGDYDP 202          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: UPI001C99DDB2 (alpha/beta hydrolase n=1 Tax=Azospirillum sp. 412522 TaxID=2494548 RepID=UPI001C99DDB2)

HSP 1 Score: 87.8 bits (216), Expect = 2.360e-17
Identity = 57/144 (39.58%), Postives = 76/144 (52.78%), Query Frame = 1
Query:   19 KYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAARPG--HPAGFSRLACSAPMYRMRTG-MPHFVAYAAAAFGCACGWGERYAPGEGDVDP 441
            KY   ++     G+ V  +D R+QGLS R LP N QI H+  F   V+D     R+V+           V +LAHSMGG VATL  AR     P  ++ +  SAPMY + +G +P ++    A  G  CGWG RYA  +GD DP
Sbjct:   78 KYAETVDALTARGFRVVALDWRNQGLSDRPLP-NRQIHHLTDFATLVDDLDEVYRQVVAP-VAAETGGPVILLAHSMGGLVATLALARHAADDPGRYAAVLLSAPMYAIHSGPLPRWLVRVLAGLGVGCGWGARYALWQGDYDP 219          
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Match: A0A1X7PQU7_AZOLI (Lysophospholipase n=4 Tax=Azospirillum TaxID=191 RepID=A0A1X7PQU7_AZOLI)

HSP 1 Score: 87.0 bits (214), Expect = 3.280e-17
Identity = 71/184 (38.59%), Postives = 93/184 (50.54%), Query Frame = 1
Query:   19 KYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFDDYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAAR-----------PGHPAGFSRLACSAPMYRMRTG-MPHFVAYAAAAFGCACGWGERYAPGEGDVDPG-GVIK--KKLTTCSRRVARLEALRRAFPQV 525
            KY    E  +  G+ V T D R+QGLS R L AN QI H+  F    +D L  V E +VR   +A +  V ++AHSMGG VATL  AR            G P  ++    SAPM+ + TG +P  +    AA G A GWGERYA G+ D DP  GV +    +T+   R A       A P++
Sbjct:   44 KYTETAEALVARGFQVVTFDWRNQGLSDRPL-ANRQIHHLRDFATLADD-LDAVHEAVVRP--LAGSGPVLLMAHSMGGLVATLALARHAAGGLEGGEREGDPQRYAAAILSAPMHAINTGWLPRPLVAGLAALGLALGWGERYAFGQHDYDPAEGVFRPDNPITSDPARYAAFHGPYAARPEL 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGE2_9PHAE1.530e-4350.86Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
A0A5C6M304_9PLAN4.500e-1939.89Lysophospholipase L2 n=1 Tax=Planctomyces bekefii ... [more]
A0A2U1WN12_9PROT1.020e-1845.07Lysophospholipase n=1 Tax=Azospirillum sp. TSO22-1... [more]
A0A433J2U2_9PROT2.220e-1840.72Alpha/beta hydrolase n=2 Tax=Azospirillum doeberei... [more]
UPI001AE6B4324.050e-1841.67alpha/beta hydrolase n=1 Tax=Azospirillum picis Ta... [more]
A0A4P7YH72_9PROT7.860e-1838.65Alpha/beta hydrolase n=2 Tax=unclassified Azospiri... [more]
A0A5A9GSL8_AZOLI8.160e-1840.28Alpha/beta hydrolase n=7 Tax=Azospirillum TaxID=19... [more]
A0A2U1VER1_9PROT1.070e-1741.22Lysophospholipase n=1 Tax=Azospirillum sp. TSO35-2... [more]
UPI001C99DDB22.360e-1739.58alpha/beta hydrolase n=1 Tax=Azospirillum sp. 4125... [more]
A0A1X7PQU7_AZOLI3.280e-1738.59Lysophospholipase n=4 Tax=Azospirillum TaxID=191 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8354contigP-wetherbeei_contig8354:65..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog425104.Ssed_0088
Preferred namepldB
PFAMsHydrolase_4
Model size527
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K01048
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0008150,GO:0008152,GO:0016020,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0044238,GO:0044464,GO:0052689,GO:0071704,GO:0071944
Exons2
Evalue5.49e-17
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,1MWDA@1224|Proteobacteria,1RRJP@1236|Gammaproteobacteria,2Q8U6@267890|Shewanellaceae
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-05_006120.1
EC3.1.1.5
DescriptionPFAM alpha beta hydrolase fold
Cds size525
COG categoryI
BiGG ReactioniETEC_1333.ETEC_4102,iEcHS_1320.EcHS_A4049
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187035.32194-CDS-P-wetherbeei_contig8354:64..5271683187035.32194-CDS-P-wetherbeei_contig8354:64..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8354 65..527 -
1683187035.3327825-CDS-P-wetherbeei_contig8354:694..7561683187035.3327825-CDS-P-wetherbeei_contig8354:694..756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8354 695..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8354.1.1prot_P-wetherbeei_contig8354.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8354 65..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8354.1.1

>prot_P-wetherbeei_contig8354.1.1 ID=prot_P-wetherbeei_contig8354.1.1|Name=mRNA_P-wetherbeei_contig8354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
WDESFLKYGWEIEQFLRCGYNVYTMDHRSQGLSGRHLPANPQITHVESFD
DYVNDALYFVREVIVRRCGVAHASEVKVLAHSMGGFVATLLAARPGHPAG
FSRLACSAPMYRMRTGMPHFVAYAAAAFGCACGWGERYAPGEGDVDPGGV
IKKKLTTCSRRVARLEALRRAFPQV
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mRNA from alignment at P-wetherbeei_contig8354:65..756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8354.1.1 ID=mRNA_P-wetherbeei_contig8354.1.1|Name=mRNA_P-wetherbeei_contig8354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=692bp|location=Sequence derived from alignment at P-wetherbeei_contig8354:65..756- (Phaeothamnion wetherbeei SAG_119_79)
TGGGATGAATCTTTTTTGAAGTACGGCTGGGAGATCGAGCAGTTCCTCCG CTGCGGTTACAAGTTAGTGAGCGCAATCGCAACGGCAGAAGGTCGAATCA TTGGAGCGGCGCTGTTTCTTTGACGTAGAAGCCAATATGCTGCTGGAACT GAGGCTGCCGCCTTTTCCCACTGCCTCTGCCTCCCTTTTCCTATATCCCT CACAACCTGCCGTCGTCGCTGCCACGCAGCGTTTACACGATGGACCACCG CTCTCAAGGCTTGTCCGGCCGCCACCTCCCAGCCAACCCGCAGATCACCC ACGTCGAGTCGTTCGACGACTACGTCAACGACGCTCTCTACTTCGTCCGC GAAGTTATCGTCCGCCGTTGCGGGGTCGCCCACGCGTCGGAAGTTAAAGT GCTCGCTCACTCTATGGGCGGCTTTGTCGCCACGCTGCTCGCGGCGCGCC CAGGGCATCCTGCGGGCTTTTCGCGGCTGGCGTGCAGCGCGCCCATGTAC CGGATGCGGACGGGCATGCCGCACTTCGTGGCGTACGCGGCGGCGGCGTT CGGCTGTGCCTGCGGCTGGGGCGAGCGGTACGCGCCAGGGGAAGGGGACG TGGACCCGGGCGGCGTCATCAAGAAGAAGCTGACCACGTGCTCTCGCCGT GTCGCCCGGCTGGAGGCGCTCCGCCGGGCGTTCCCGCAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8354:65..756-

>mRNA_P-wetherbeei_contig8354.1.1 ID=mRNA_P-wetherbeei_contig8354.1.1|Name=mRNA_P-wetherbeei_contig8354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig8354:65..756- (Phaeothamnion wetherbeei SAG_119_79)
TGGGATGAATCTTTTTTGAAGTACGGCTGGGAGATCGAGCAGTTCCTCCG
CTGCGGTTACAACGTTTACACGATGGACCACCGCTCTCAAGGCTTGTCCG
GCCGCCACCTCCCAGCCAACCCGCAGATCACCCACGTCGAGTCGTTCGAC
GACTACGTCAACGACGCTCTCTACTTCGTCCGCGAAGTTATCGTCCGCCG
TTGCGGGGTCGCCCACGCGTCGGAAGTTAAAGTGCTCGCTCACTCTATGG
GCGGCTTTGTCGCCACGCTGCTCGCGGCGCGCCCAGGGCATCCTGCGGGC
TTTTCGCGGCTGGCGTGCAGCGCGCCCATGTACCGGATGCGGACGGGCAT
GCCGCACTTCGTGGCGTACGCGGCGGCGGCGTTCGGCTGTGCCTGCGGCT
GGGGCGAGCGGTACGCGCCAGGGGAAGGGGACGTGGACCCGGGCGGCGTC
ATCAAGAAGAAGCTGACCACGTGCTCTCGCCGTGTCGCCCGGCTGGAGGC
GCTCCGCCGGGCGTTCCCGCAGGTA
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